==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/RNA 15-DEC-97 1A1T . COMPND 2 MOLECULE: SL3 STEM-LOOP RNA; . SOURCE 2 SYNTHETIC: YES; . AUTHOR R.N.DE GUZMAN,Z.R.WU,C.C.STALLING,L.PAPPALARDO,P.N.BORER, . 55 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5194.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 25 45.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 7.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 20.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 233 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-158.6 6.2 -13.3 4.8 2 2 A Q + 0 0 179 3,-0.0 4,-0.1 0, 0.0 0, 0.0 0.823 360.0 33.4 77.2 106.6 3.4 -12.2 2.5 3 3 A K > - 0 0 152 2,-0.1 3,-2.5 3,-0.0 4,-0.1 0.962 62.1-169.2 82.2 68.5 4.5 -10.3 -0.6 4 4 A G G > S+ 0 0 57 1,-0.3 3,-2.8 2,-0.2 4,-0.1 0.754 81.3 77.7 -58.5 -25.0 7.9 -11.9 -1.5 5 5 A N G > S+ 0 0 111 1,-0.3 3,-2.2 2,-0.2 -1,-0.3 0.719 73.8 80.3 -57.3 -20.3 8.3 -9.0 -4.0 6 6 A F G X + 0 0 91 -3,-2.5 3,-2.2 1,-0.3 -1,-0.3 0.657 67.6 85.0 -61.0 -15.5 9.2 -7.1 -0.8 7 7 A R G X + 0 0 165 -3,-2.8 3,-2.8 1,-0.3 -1,-0.3 0.631 63.1 89.2 -61.7 -12.5 12.6 -8.7 -1.2 8 8 A N G X > + 0 0 36 -3,-2.2 3,-2.3 1,-0.3 5,-0.6 0.725 66.1 80.5 -57.2 -20.8 13.3 -5.8 -3.5 9 9 A Q G X 5S+ 0 0 63 -3,-2.2 3,-1.4 1,-0.3 -1,-0.3 0.636 71.1 80.3 -60.9 -13.1 14.4 -4.1 -0.4 10 10 A R G < 5S+ 0 0 202 -3,-2.8 -1,-0.3 1,-0.3 -2,-0.2 0.524 93.4 48.7 -71.3 -5.1 17.6 -6.1 -1.0 11 11 A K G < 5S- 0 0 149 -3,-2.3 -1,-0.3 -4,-0.1 -2,-0.1 -0.190 119.4-106.9-126.2 38.1 18.5 -3.4 -3.5 12 12 A T T < 5 - 0 0 76 -3,-1.4 11,-0.2 10,-0.1 -3,-0.2 0.844 49.1-146.8 36.0 48.2 17.7 -0.4 -1.2 13 13 A V < - 0 0 21 -5,-0.6 9,-2.8 9,-0.2 10,-0.6 0.086 9.8-115.9 -38.0 154.8 14.6 0.1 -3.3 14 14 A K B -A 21 0A 70 7,-0.2 2,-0.7 8,-0.2 11,-0.3 -0.842 19.8-117.7-104.2 138.4 13.6 3.8 -3.8 15 15 A C > - 0 0 0 5,-2.4 4,-1.1 -2,-0.4 5,-0.2 -0.644 18.5-163.0 -76.6 112.7 10.4 5.2 -2.4 16 16 A F T 4 S+ 0 0 140 -2,-0.7 -1,-0.2 1,-0.2 8,-0.1 0.388 87.3 56.6 -76.0 4.3 8.4 6.3 -5.4 17 17 A N T 4 S+ 0 0 12 17,-0.1 18,-0.5 3,-0.1 -1,-0.2 0.877 127.7 7.4 -97.0 -64.0 6.3 8.3 -3.0 18 18 A C T 4 S- 0 0 54 16,-0.1 -2,-0.1 12,-0.1 6,-0.0 0.853 99.8-120.2 -86.6 -41.3 8.8 10.5 -1.1 19 19 A G < + 0 0 27 -4,-1.1 -3,-0.2 1,-0.2 2,-0.1 0.687 65.4 132.1 104.7 29.0 11.7 9.6 -3.3 20 20 A K - 0 0 146 -5,-0.2 -5,-2.4 3,-0.1 2,-0.4 -0.278 54.1-115.2 -98.3-173.4 14.0 8.2 -0.7 21 21 A E B S+A 14 0A 133 -7,-0.3 -7,-0.2 1,-0.1 -8,-0.2 -0.983 86.8 48.5-133.2 121.4 16.0 5.0 -0.6 22 22 A G S S+ 0 0 35 -9,-2.8 2,-0.3 -2,-0.4 -9,-0.2 0.196 106.6 41.7 137.4 -10.2 15.4 2.1 1.9 23 23 A H S S- 0 0 53 -10,-0.6 -1,-0.3 -11,-0.2 2,-0.2 -0.981 70.2-126.9-158.7 156.9 11.6 1.7 1.5 24 24 A I > - 0 0 31 -2,-0.3 3,-0.9 -9,-0.2 4,-0.4 -0.682 36.1-103.7-106.9 162.0 9.0 1.6 -1.2 25 25 A A G > S+ 0 0 21 -11,-0.3 3,-0.9 1,-0.3 -10,-0.1 0.840 124.4 59.4 -49.8 -35.7 5.7 3.6 -1.4 26 26 A K G 3 S+ 0 0 138 1,-0.3 -1,-0.3 6,-0.0 6,-0.0 0.912 115.9 31.6 -59.9 -44.4 4.1 0.4 -0.3 27 27 A N G < S+ 0 0 81 -3,-0.9 2,-0.4 -21,-0.0 -1,-0.3 0.204 99.9 116.9 -96.8 12.8 6.1 0.4 2.9 28 28 A C < - 0 0 15 -3,-0.9 4,-0.1 -4,-0.4 -3,-0.0 -0.672 58.0-152.8 -85.0 135.3 6.1 4.2 2.8 29 29 A R S S+ 0 0 249 -2,-0.4 -1,-0.1 2,-0.1 -4,-0.1 0.814 71.4 93.6 -74.7 -32.3 4.4 5.9 5.7 30 30 A A S S- 0 0 42 1,-0.1 2,-0.1 -3,-0.0 -2,-0.1 -0.195 88.8 -97.8 -59.9 154.0 3.5 8.9 3.6 31 31 A P - 0 0 95 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.390 51.1 -79.5 -74.9 152.8 0.1 9.0 1.9 32 32 A R S S+ 0 0 175 -2,-0.1 2,-0.2 -4,-0.1 -15,-0.0 -0.346 76.0 145.5 -55.1 107.0 -0.2 8.0 -1.7 33 33 A K - 0 0 132 -2,-0.4 9,-0.0 -3,-0.1 -1,-0.0 -0.724 50.4-137.9-134.5-176.7 1.0 11.1 -3.5 34 34 A K + 0 0 140 -2,-0.2 9,-2.4 2,-0.1 2,-0.6 -0.304 40.4 153.3-144.4 51.8 2.8 12.1 -6.7 35 35 A G B -B 42 0B 22 -18,-0.5 7,-0.3 7,-0.3 2,-0.1 -0.779 49.8-117.8 -90.7 118.7 5.1 14.8 -5.6 36 36 A C > - 0 0 2 5,-2.9 4,-1.5 -2,-0.6 2,-0.6 -0.349 15.4-147.4 -55.7 120.4 8.2 15.1 -7.7 37 37 A W T 4 S+ 0 0 63 1,-0.2 -1,-0.2 2,-0.1 8,-0.1 -0.140 93.6 55.1 -83.7 39.5 11.1 14.5 -5.4 38 38 A K T 4 S+ 0 0 109 -2,-0.6 -1,-0.2 3,-0.1 -2,-0.0 0.533 127.2 6.7-133.8 -49.1 13.1 16.9 -7.5 39 39 A C T 4 S- 0 0 45 2,-0.1 -2,-0.1 -3,-0.1 -4,-0.0 0.668 95.1-119.9-109.6 -32.1 11.2 20.2 -7.6 40 40 A G < + 0 0 63 -4,-1.5 2,-0.5 1,-0.3 -3,-0.1 0.665 60.1 148.1 96.2 22.6 8.5 19.3 -5.2 41 41 A K - 0 0 131 -5,-0.2 -5,-2.9 -7,-0.0 2,-0.7 -0.799 44.2-136.2 -94.4 128.3 5.6 19.7 -7.6 42 42 A E B S+B 35 0B 141 -2,-0.5 -7,-0.3 -7,-0.3 3,-0.1 -0.758 85.0 40.0 -87.7 113.1 2.6 17.4 -7.1 43 43 A G S S+ 0 0 59 -9,-2.4 -1,-0.2 -2,-0.7 2,-0.1 -0.271 102.8 58.4 149.6 -53.3 1.4 16.0 -10.4 44 44 A H S S- 0 0 31 -3,-0.3 -1,-0.7 -8,-0.0 2,-0.3 -0.350 71.5-129.3 -97.0 179.8 4.5 15.2 -12.5 45 45 A Q > - 0 0 80 -2,-0.1 3,-1.0 -9,-0.1 -9,-0.1 -0.853 27.3-103.4-129.5 164.6 7.4 12.8 -11.7 46 46 A M G > S+ 0 0 36 -2,-0.3 3,-2.5 1,-0.3 5,-0.1 0.896 122.3 57.2 -51.3 -46.0 11.2 13.0 -11.8 47 47 A K G 3 S+ 0 0 181 1,-0.3 -1,-0.3 6,-0.0 7,-0.1 0.830 120.6 30.7 -54.9 -33.3 11.2 11.1 -15.0 48 48 A D G < S+ 0 0 116 -3,-1.0 2,-0.4 5,-0.1 -1,-0.3 -0.142 85.9 164.2-116.8 34.0 9.1 13.9 -16.4 49 49 A C < - 0 0 19 -3,-2.5 -3,-0.1 1,-0.2 5,-0.0 -0.392 23.1-165.2 -57.6 110.9 10.5 16.6 -14.1 50 50 A T S S+ 0 0 106 -2,-0.4 -1,-0.2 1,-0.1 3,-0.1 0.376 83.4 56.3 -80.3 4.4 9.3 19.8 -15.8 51 51 A E S S- 0 0 107 1,-0.4 2,-0.3 -5,-0.1 -1,-0.1 0.879 118.4 -21.0 -96.8 -70.4 11.9 21.6 -13.7 52 52 A R S S- 0 0 176 1,-0.2 -1,-0.4 -6,-0.1 -3,-0.1 -0.865 79.7 -70.2-138.5 171.1 15.3 20.1 -14.4 53 53 A Q - 0 0 171 -2,-0.3 2,-0.9 1,-0.1 -1,-0.2 0.048 51.0-104.8 -54.5 170.8 16.8 16.9 -15.7 54 54 A A 0 0 39 -7,-0.1 -1,-0.1 1,-0.1 -7,-0.0 -0.682 360.0 360.0-104.3 76.4 16.7 13.7 -13.7 55 55 A N 0 0 173 -2,-0.9 -1,-0.1 0, 0.0 -2,-0.1 -0.088 360.0 360.0 43.3 360.0 20.2 13.4 -12.3