==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION/DNA 15-NOV-99 1B01 . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR F.X.GOMIS-RUETH,M.SOLA,P.ACEBO,A.PARRAGA,A.GUASCH,R.ERITJA, . 86 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5488.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 81.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 48 55.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 195 0, 0.0 54,-4.6 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 -26.9 25.4 1.2 92.5 2 2 A K E -A 54 0A 128 52,-0.3 2,-0.3 53,-0.1 52,-0.2 -0.839 360.0-173.8-103.6 135.4 27.7 4.2 92.5 3 3 A K E -A 53 0A 79 50,-2.8 50,-2.9 -2,-0.4 2,-0.2 -0.944 17.0-129.9-127.2 147.0 28.8 6.0 95.7 4 4 A R E +A 52 0A 191 -2,-0.3 2,-0.3 48,-0.2 48,-0.2 -0.564 28.8 163.8 -94.6 160.9 30.8 9.2 96.2 5 5 A L E -A 51 0A 26 46,-1.7 46,-2.7 -2,-0.2 2,-0.6 -0.912 29.0-132.1-171.1 143.7 33.9 9.7 98.4 6 6 A T E -A 50 0A 60 -2,-0.3 44,-0.2 44,-0.2 2,-0.2 -0.915 25.8-176.1-111.3 123.8 36.7 12.2 98.9 7 7 A I E -A 49 0A 2 42,-2.5 42,-2.6 -2,-0.6 2,-0.4 -0.678 19.6-136.1-111.3 164.8 40.2 11.0 99.1 8 8 A T E -A 48 0A 45 40,-0.2 2,-0.3 -2,-0.2 40,-0.2 -0.988 28.4-179.7-121.5 129.4 43.5 12.8 99.7 9 9 A L E -A 47 0A 4 38,-2.7 38,-2.2 -2,-0.4 65,-0.1 -0.952 34.5 -89.4-135.7 155.1 46.6 12.0 97.6 10 10 A S >> - 0 0 48 -2,-0.3 4,-3.1 36,-0.2 3,-0.8 -0.287 36.3-123.1 -58.0 135.8 50.2 13.0 97.1 11 11 A E H 3> S+ 0 0 85 1,-0.3 4,-0.9 2,-0.2 -1,-0.2 0.742 116.8 46.1 -52.5 -22.4 50.7 15.8 94.8 12 12 A S H 3> S+ 0 0 70 2,-0.2 4,-0.9 3,-0.1 -1,-0.3 0.742 110.6 49.4 -92.5 -27.6 53.0 13.4 92.9 13 13 A V H <> S+ 0 0 11 -3,-0.8 4,-2.3 2,-0.2 -2,-0.2 0.847 113.6 47.7 -77.8 -35.0 50.6 10.4 93.0 14 14 A L H X S+ 0 0 25 -4,-3.1 4,-2.5 2,-0.2 -2,-0.2 0.884 108.9 53.2 -71.0 -40.1 47.8 12.6 91.7 15 15 A E H X S+ 0 0 145 -4,-0.9 4,-1.4 -5,-0.4 -1,-0.2 0.826 112.4 46.6 -64.2 -30.2 50.0 14.0 89.0 16 16 A N H X S+ 0 0 19 -4,-0.9 4,-2.4 2,-0.2 -2,-0.2 0.903 105.3 57.5 -77.7 -41.7 50.7 10.5 88.0 17 17 A L H X S+ 0 0 0 -4,-2.3 4,-2.7 1,-0.2 5,-0.4 0.965 104.7 56.5 -48.6 -55.2 47.0 9.5 88.2 18 18 A E H X S+ 0 0 77 -4,-2.5 4,-2.9 1,-0.2 -1,-0.2 0.888 108.1 43.5 -38.9 -66.4 46.5 12.2 85.6 19 19 A K H X S+ 0 0 108 -4,-1.4 4,-2.7 1,-0.2 5,-0.3 0.936 114.8 49.5 -49.7 -56.1 48.9 10.9 83.0 20 20 A M H X S+ 0 0 14 -4,-2.4 4,-1.6 1,-0.2 -1,-0.2 0.927 113.7 43.2 -52.1 -55.2 47.8 7.3 83.4 21 21 A A H X>S+ 0 0 4 -4,-2.7 5,-2.8 -5,-0.2 4,-0.5 0.927 112.5 57.7 -58.2 -44.2 44.1 7.9 83.1 22 22 A R H ><5S+ 0 0 164 -4,-2.9 3,-1.4 -5,-0.4 -2,-0.2 0.937 107.9 42.5 -52.6 -55.9 44.9 10.3 80.2 23 23 A E H 3<5S+ 0 0 129 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.772 117.8 47.5 -65.6 -24.6 46.7 7.8 78.1 24 24 A M H 3<5S- 0 0 83 -4,-1.6 -1,-0.3 -5,-0.3 -2,-0.2 0.438 109.0-127.3 -93.8 1.3 44.1 5.2 78.8 25 25 A G T <<5 + 0 0 68 -3,-1.4 2,-0.2 -4,-0.5 -3,-0.2 0.876 64.6 136.4 54.5 40.6 41.4 7.7 78.1 26 26 A L < - 0 0 56 -5,-2.8 -1,-0.2 -6,-0.2 2,-0.2 -0.719 58.2-113.6-114.3 163.3 39.8 6.9 81.5 27 27 A S > - 0 0 70 -2,-0.2 4,-4.0 1,-0.1 5,-0.2 -0.512 33.2-113.6 -87.3 162.9 38.4 9.1 84.3 28 28 A K H > S+ 0 0 56 1,-0.2 4,-4.1 2,-0.2 5,-0.4 0.947 122.9 54.6 -62.3 -42.5 40.3 9.1 87.6 29 29 A S H > S+ 0 0 24 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.877 115.0 40.4 -56.4 -37.1 37.3 7.3 89.0 30 30 A A H > S+ 0 0 31 2,-0.2 4,-2.6 3,-0.2 -2,-0.2 0.914 115.7 48.3 -78.2 -44.9 37.7 4.7 86.3 31 31 A M H X S+ 0 0 0 -4,-4.0 4,-3.5 2,-0.2 5,-0.2 0.948 114.4 47.3 -59.6 -48.7 41.5 4.6 86.4 32 32 A I H X S+ 0 0 1 -4,-4.1 4,-3.5 -5,-0.2 5,-0.2 0.968 112.5 50.1 -55.1 -53.3 41.4 4.2 90.2 33 33 A S H X S+ 0 0 20 -4,-1.8 4,-2.2 -5,-0.4 -1,-0.2 0.844 112.7 47.4 -52.1 -40.2 38.7 1.5 89.7 34 34 A V H X S+ 0 0 49 -4,-2.6 4,-3.4 2,-0.2 -2,-0.2 0.974 114.1 46.0 -66.9 -55.0 40.9 -0.2 87.2 35 35 A A H X S+ 0 0 1 -4,-3.5 4,-2.8 2,-0.2 -2,-0.2 0.874 112.2 51.0 -56.4 -41.9 44.0 0.0 89.5 36 36 A L H X S+ 0 0 2 -4,-3.5 4,-2.9 -5,-0.2 -1,-0.2 0.981 113.7 44.3 -60.1 -55.8 42.0 -1.2 92.5 37 37 A E H X S+ 0 0 86 -4,-2.2 4,-2.6 -5,-0.2 -2,-0.2 0.962 113.0 52.7 -49.6 -59.1 40.7 -4.2 90.5 38 38 A N H >X S+ 0 0 67 -4,-3.4 4,-1.8 1,-0.2 3,-0.6 0.940 111.6 44.8 -39.5 -71.8 44.2 -4.8 89.1 39 39 A Y H 3X S+ 0 0 24 -4,-2.8 4,-1.0 1,-0.3 -1,-0.2 0.877 108.3 56.8 -41.7 -53.7 45.7 -4.8 92.6 40 40 A K H >< S+ 0 0 78 -4,-2.9 3,-1.2 -5,-0.2 -1,-0.3 0.936 109.8 48.8 -44.6 -51.1 43.0 -7.0 94.0 41 41 A K H << S+ 0 0 139 -4,-2.6 -2,-0.2 -3,-0.6 -1,-0.2 0.964 105.4 52.9 -54.1 -63.7 43.9 -9.5 91.3 42 42 A G H 3< 0 0 78 -4,-1.8 -1,-0.3 -5,-0.1 -2,-0.2 0.572 360.0 360.0 -53.0 -8.0 47.7 -9.5 91.8 43 43 A Q << 0 0 140 -3,-1.2 -2,-0.2 -4,-1.0 -3,-0.1 0.851 360.0 360.0 -88.3 360.0 46.9 -10.3 95.4 44 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 45 1 B M 0 0 187 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 113.5 51.6 19.6 98.7 46 2 B K - 0 0 151 -36,-0.1 2,-0.3 -35,-0.1 -36,-0.2 -0.350 360.0-163.0 -64.1 141.2 48.8 17.0 99.2 47 3 B K E -A 9 0A 113 -38,-2.2 -38,-2.7 -2,-0.0 2,-0.3 -0.911 12.2-121.7-129.6 157.4 45.5 17.6 97.3 48 4 B R E -A 8 0A 178 -2,-0.3 2,-0.4 -40,-0.2 -40,-0.2 -0.674 19.9-171.2-100.2 152.4 41.9 16.3 97.6 49 5 B L E -A 7 0A 27 -42,-2.6 -42,-2.5 -2,-0.3 2,-0.6 -0.965 14.9-148.7-146.9 122.8 39.8 14.5 95.0 50 6 B T E +A 6 0A 82 -2,-0.4 2,-0.2 -44,-0.2 -44,-0.2 -0.823 31.5 172.7 -92.8 120.2 36.1 13.6 95.0 51 7 B I E -A 5 0A 5 -46,-2.7 -46,-1.7 -2,-0.6 2,-0.4 -0.745 28.9-129.4-123.5 171.2 35.5 10.4 93.1 52 8 B T E -A 4 0A 57 -2,-0.2 2,-0.4 -48,-0.2 -48,-0.2 -0.988 25.9-174.5-125.9 129.9 32.7 8.1 92.4 53 9 B L E -A 3 0A 0 -50,-2.9 -50,-2.8 -2,-0.4 2,-0.3 -0.957 31.6-104.8-129.4 146.9 33.1 4.3 92.8 54 10 B S E >> -A 2 0A 30 -2,-0.4 4,-2.9 -52,-0.2 3,-1.6 -0.490 34.1-123.0 -69.5 125.6 31.0 1.3 92.2 55 11 B E H 3> S+ 0 0 83 -54,-4.6 4,-3.4 -2,-0.3 5,-0.2 0.804 113.0 49.0 -32.1 -51.3 29.5 -0.0 95.4 56 12 B S H 3> S+ 0 0 83 -55,-0.2 4,-1.6 1,-0.2 -1,-0.3 0.853 113.5 45.7 -63.4 -37.7 31.1 -3.4 94.8 57 13 B V H <> S+ 0 0 28 -3,-1.6 4,-0.6 2,-0.2 -2,-0.2 0.826 115.2 48.4 -75.4 -30.9 34.5 -1.9 94.0 58 14 B L H X S+ 0 0 22 -4,-2.9 4,-2.6 2,-0.2 3,-0.5 0.924 108.2 53.6 -71.9 -46.3 34.1 0.3 97.1 59 15 B E H X S+ 0 0 135 -4,-3.4 4,-2.1 -5,-0.3 -2,-0.2 0.895 112.7 44.1 -54.6 -43.1 33.1 -2.6 99.2 60 16 B N H X S+ 0 0 25 -4,-1.6 4,-2.0 2,-0.2 -1,-0.3 0.674 106.6 61.3 -77.5 -16.0 36.2 -4.3 98.1 61 17 B L H X S+ 0 0 0 -4,-0.6 4,-2.0 -3,-0.5 -2,-0.2 0.926 107.8 44.8 -71.0 -44.3 38.2 -1.1 98.6 62 18 B E H X S+ 0 0 61 -4,-2.6 4,-2.9 2,-0.2 -2,-0.2 0.960 111.6 52.1 -60.2 -55.0 37.2 -1.3 102.3 63 19 B K H X S+ 0 0 97 -4,-2.1 4,-2.0 1,-0.2 5,-0.2 0.946 113.5 42.9 -46.6 -61.8 38.0 -5.0 102.6 64 20 B M H < S+ 0 0 4 -4,-2.0 4,-0.4 1,-0.2 -1,-0.2 0.827 114.0 52.5 -54.5 -38.9 41.5 -4.6 101.1 65 21 B A H ><>S+ 0 0 6 -4,-2.0 5,-2.5 2,-0.2 3,-0.9 0.923 108.4 48.9 -65.8 -48.9 42.2 -1.4 103.1 66 22 B R H ><5S+ 0 0 173 -4,-2.9 3,-3.3 1,-0.3 -2,-0.2 0.988 112.0 49.2 -51.3 -65.8 41.3 -3.0 106.4 67 23 B E T 3<5S+ 0 0 123 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.536 114.1 45.8 -52.6 -13.1 43.5 -6.0 105.8 68 24 B M T < 5S- 0 0 73 -3,-0.9 -1,-0.3 -4,-0.4 -2,-0.2 0.339 109.0-124.6-111.9 3.5 46.4 -3.7 104.8 69 25 B G T < 5S+ 0 0 71 -3,-3.3 2,-0.3 -4,-0.4 -3,-0.2 0.886 70.1 121.2 55.0 41.7 45.9 -1.5 107.8 70 26 B L < - 0 0 66 -5,-2.5 -1,-0.2 -6,-0.1 -2,-0.2 -0.884 65.1-108.3-130.7 164.7 45.6 1.6 105.5 71 27 B S > - 0 0 70 -2,-0.3 4,-3.4 -3,-0.1 5,-0.2 -0.442 39.2-105.3 -84.1 163.9 43.0 4.3 104.8 72 28 B K H > S+ 0 0 80 1,-0.2 4,-3.0 2,-0.2 5,-0.4 0.951 124.6 51.7 -56.2 -50.1 41.1 4.3 101.5 73 29 B S H > S+ 0 0 23 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.909 114.0 46.3 -50.2 -43.6 43.2 7.2 100.3 74 30 B A H > S+ 0 0 30 2,-0.2 4,-1.7 3,-0.2 -2,-0.2 0.919 112.9 46.9 -66.0 -49.7 46.3 5.1 101.3 75 31 B M H >X S+ 0 0 0 -4,-3.4 4,-2.3 2,-0.2 3,-1.4 0.988 113.4 48.7 -55.9 -60.4 45.1 1.9 99.7 76 32 B I H 3X S+ 0 0 1 -4,-3.0 4,-2.5 1,-0.3 -1,-0.2 0.868 109.9 53.2 -47.3 -43.3 44.1 3.7 96.5 77 33 B S H 3X S+ 0 0 26 -4,-2.0 4,-1.8 -5,-0.4 -1,-0.3 0.812 110.8 47.2 -64.0 -31.7 47.5 5.4 96.5 78 34 B V H X S+ 0 0 64 -4,-2.7 4,-2.4 2,-0.2 3,-1.2 0.970 104.3 49.0 -68.0 -56.9 51.4 -0.5 91.9 83 39 B Y H 3X S+ 0 0 44 -4,-3.0 4,-1.0 1,-0.3 -2,-0.2 0.912 106.6 57.6 -48.6 -48.5 49.7 -0.5 88.5 84 40 B K H 3< S+ 0 0 78 -4,-1.7 -1,-0.3 -5,-0.2 -2,-0.2 0.833 110.6 46.0 -52.6 -33.7 52.2 2.1 87.2 85 41 B K H << S+ 0 0 130 -3,-1.2 -2,-0.2 -4,-0.8 -1,-0.2 0.980 103.1 56.8 -73.5 -60.7 54.8 -0.5 88.1 86 42 B G H < 0 0 64 -4,-2.4 -1,-0.2 1,-0.1 -2,-0.2 0.659 360.0 360.0 -45.6 -13.4 53.2 -3.6 86.6 87 43 B Q < 0 0 172 -4,-1.0 -2,-0.1 -5,-0.3 -1,-0.1 -0.079 360.0 360.0 91.9 360.0 53.4 -1.3 83.6