==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER AIDS 07-MAY-98 1BDE . COMPND 2 MOLECULE: VPR PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.YAO,A.A.AZAD,I.G.MACREADIE,R.S.NORTON . 33 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3455.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 28 84.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 63.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 50 A Y 0 0 268 0, 0.0 2,-0.5 0, 0.0 6,-0.0 0.000 360.0 360.0 360.0 -18.0 0.9 -1.2 -1.2 2 51 A G >> - 0 0 41 1,-0.1 4,-2.8 4,-0.1 5,-0.8 -0.524 360.0-123.9 -65.9 115.7 -1.9 1.2 -0.2 3 52 A D H >5S+ 0 0 135 -2,-0.5 4,-0.9 1,-0.2 5,-0.2 0.712 107.4 43.3 -28.0 -46.4 -3.0 2.8 -3.6 4 53 A T H >5S+ 0 0 84 3,-0.2 4,-2.7 2,-0.2 5,-0.2 0.984 124.4 31.9 -70.8 -58.3 -2.4 6.3 -2.2 5 54 A W H >5S+ 0 0 187 2,-0.2 4,-3.1 1,-0.2 5,-0.3 0.974 127.8 39.7 -63.1 -56.8 0.9 5.8 -0.4 6 55 A A H X5S+ 0 0 32 -4,-2.8 4,-1.4 2,-0.2 -3,-0.2 0.889 116.9 51.7 -62.0 -40.6 2.2 3.1 -2.7 7 56 A G H X S+ 0 0 157 -4,-0.4 4,-2.6 2,-0.2 -1,-0.2 0.970 111.5 35.3 -70.5 -51.7 10.4 7.8 -7.6 14 63 A I H X S+ 0 0 85 -4,-1.1 4,-2.7 1,-0.2 5,-0.2 0.842 116.0 56.4 -72.8 -30.0 10.4 8.6 -11.2 15 64 A L H X S+ 0 0 95 -4,-2.5 4,-1.1 2,-0.2 -1,-0.2 0.873 112.3 42.2 -69.3 -34.1 9.5 12.2 -10.6 16 65 A Q H >X S+ 0 0 61 -4,-1.5 4,-1.3 -5,-0.3 3,-0.6 0.977 115.1 49.2 -74.9 -53.9 12.5 12.6 -8.4 17 66 A Q H 3X S+ 0 0 100 -4,-2.6 4,-1.2 1,-0.3 -2,-0.2 0.862 118.2 41.3 -50.3 -39.8 14.7 10.7 -10.8 18 67 A L H 3X S+ 0 0 100 -4,-2.7 4,-0.6 1,-0.2 -1,-0.3 0.706 110.5 55.2 -83.5 -20.9 13.5 12.8 -13.6 19 68 A L H << S+ 0 0 98 -4,-1.1 -2,-0.2 -3,-0.6 -1,-0.2 0.597 106.0 58.1 -84.6 -7.4 13.6 16.0 -11.6 20 69 A F H >X S+ 0 0 95 -4,-1.3 3,-2.3 1,-0.2 4,-0.8 0.864 88.7 70.0 -87.1 -37.2 17.2 15.0 -11.0 21 70 A I H >X S+ 0 0 69 -4,-1.2 4,-2.2 1,-0.3 3,-1.5 0.840 86.1 66.6 -50.4 -37.8 18.2 14.9 -14.7 22 71 A H H 3X S+ 0 0 115 -4,-0.6 4,-2.7 1,-0.3 5,-0.4 0.832 103.8 48.5 -55.1 -26.8 17.9 18.7 -15.0 23 72 A F H <4 S+ 0 0 133 -3,-2.3 -1,-0.3 -4,-0.2 -2,-0.2 0.673 114.1 43.9 -84.7 -17.8 20.9 18.7 -12.6 24 73 A R H << S+ 0 0 174 -3,-1.5 -2,-0.2 -4,-0.8 -1,-0.2 0.565 120.7 43.0 -98.5 -15.6 22.7 16.1 -14.7 25 74 A I H >X S+ 0 0 95 -4,-2.2 4,-2.9 -5,-0.3 3,-0.8 0.864 120.3 36.2 -95.8 -54.4 21.8 18.0 -17.9 26 75 A G H 3X S+ 0 0 37 -4,-2.7 4,-2.9 -5,-0.3 5,-0.2 0.999 119.1 46.9 -64.5 -65.5 22.4 21.6 -16.8 27 76 A C H 34 S+ 0 0 53 -5,-0.4 -1,-0.2 1,-0.2 -4,-0.1 0.332 123.9 37.2 -59.8 9.8 25.5 21.1 -14.7 28 77 A R H <4 S+ 0 0 210 -3,-0.8 -1,-0.2 2,-0.0 -2,-0.2 0.586 120.1 40.9-128.1 -42.6 26.9 18.9 -17.5 29 78 A H H < S+ 0 0 157 -4,-2.9 -3,-0.2 1,-0.2 -2,-0.2 0.820 131.0 21.6 -82.0 -32.8 25.8 20.6 -20.7 30 79 A S S < S+ 0 0 90 -4,-2.9 2,-1.5 -5,-0.4 -1,-0.2 0.010 72.0 132.2-127.5 33.7 26.4 24.2 -19.7 31 80 A R + 0 0 148 -5,-0.2 2,-2.3 -3,-0.2 -1,-0.1 -0.011 25.4 139.7 -74.7 39.3 28.9 24.2 -16.8 32 81 A I 0 0 161 -2,-1.5 -1,-0.2 1,-0.2 -5,-0.0 -0.300 360.0 360.0 -81.3 59.1 30.9 27.0 -18.6 33 82 A G 0 0 82 -2,-2.3 -1,-0.2 0, 0.0 -2,-0.1 -0.101 360.0 360.0-150.7 360.0 31.6 28.8 -15.3