==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MOTOR PROTEIN 21-DEC-07 3BRL . COMPND 2 MOLECULE: DYNEIN LIGHT CHAIN 1, CYTOPLASMIC; . SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; . AUTHOR G.C.BENISON,P.A.KARPLUS,E.J.BARBAR,M.CHIODO . 98 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5559.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 67.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 31 31.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 29.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A S 0 0 123 0, 0.0 24,-0.0 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 -78.3 7.1 -11.8 5.5 2 3 A D + 0 0 130 2,-0.0 2,-0.2 0, 0.0 76,-0.1 0.549 360.0 101.8-121.6 -21.2 4.0 -11.0 3.4 3 4 A R - 0 0 61 1,-0.1 2,-0.6 74,-0.1 22,-0.0 -0.454 67.2-127.8 -80.6 140.5 5.2 -12.0 -0.1 4 5 A K - 0 0 159 -2,-0.2 74,-2.1 2,-0.0 2,-0.6 -0.717 16.1-145.9 -91.2 118.7 4.3 -15.2 -1.9 5 6 A A E +A 77 0A 48 -2,-0.6 2,-0.5 72,-0.2 72,-0.2 -0.756 19.8 177.6 -82.6 121.6 7.2 -17.3 -3.2 6 7 A V E -A 76 0A 48 70,-2.3 70,-2.9 -2,-0.6 2,-0.4 -0.937 16.7-152.4-124.9 106.8 6.3 -19.1 -6.4 7 8 A I E +A 75 0A 69 -2,-0.5 68,-0.2 68,-0.2 3,-0.1 -0.663 16.1 177.9 -82.3 126.6 9.2 -21.0 -7.9 8 9 A K E - 0 0 97 66,-2.4 2,-0.3 -2,-0.4 67,-0.2 0.856 65.9 -0.7 -97.6 -43.8 8.8 -21.3 -11.7 9 10 A N E +A 74 0A 61 65,-1.8 65,-2.6 2,-0.0 -1,-0.4 -0.977 69.0 174.6-150.6 130.2 11.8 -23.2 -13.0 10 11 A A E +A 73 0A 34 -2,-0.3 2,-0.3 63,-0.2 63,-0.2 -0.998 26.0 179.5-143.0 137.3 14.7 -24.4 -10.9 11 12 A D E +A 72 0A 35 61,-3.2 61,-2.3 -2,-0.4 2,-0.3 -0.795 62.4 96.5-126.2 88.3 17.8 -26.5 -11.4 12 13 A M E S-A 71 0A 5 -2,-0.3 59,-0.2 59,-0.2 58,-0.1 -0.967 81.0 -86.4-174.8 145.2 19.0 -26.3 -7.9 13 14 A S > - 0 0 28 57,-0.6 4,-2.4 -2,-0.3 5,-0.2 -0.298 40.4-120.7 -64.3 151.7 19.1 -28.1 -4.5 14 15 A E H > S+ 0 0 148 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.861 114.2 57.2 -68.1 -32.5 16.0 -27.4 -2.4 15 16 A E H > S+ 0 0 138 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.933 110.7 43.5 -54.5 -48.4 18.2 -26.1 0.4 16 17 A M H > S+ 0 0 16 2,-0.2 4,-2.7 1,-0.2 -2,-0.2 0.864 109.2 56.3 -72.1 -34.8 19.6 -23.5 -2.1 17 18 A Q H X S+ 0 0 24 -4,-2.4 4,-2.1 2,-0.2 -1,-0.2 0.909 107.9 49.4 -60.3 -41.6 16.2 -22.7 -3.5 18 19 A Q H X S+ 0 0 105 -4,-2.2 4,-2.5 2,-0.2 -2,-0.2 0.890 109.6 52.0 -64.6 -38.8 15.1 -21.8 0.0 19 20 A D H X S+ 0 0 45 -4,-1.8 4,-3.0 2,-0.2 -2,-0.2 0.920 107.6 52.4 -59.3 -47.1 18.2 -19.7 0.4 20 21 A A H X S+ 0 0 0 -4,-2.7 4,-2.5 2,-0.2 -2,-0.2 0.906 110.9 46.1 -54.0 -49.1 17.4 -17.8 -2.9 21 22 A V H X S+ 0 0 14 -4,-2.1 4,-2.0 2,-0.2 -1,-0.2 0.912 113.6 50.3 -61.7 -43.7 13.9 -17.1 -1.6 22 23 A D H X S+ 0 0 69 -4,-2.5 4,-2.2 2,-0.2 -2,-0.2 0.896 111.2 48.1 -58.9 -46.1 15.3 -16.0 1.8 23 24 A C H X S+ 0 0 4 -4,-3.0 4,-2.6 1,-0.2 -2,-0.2 0.926 112.0 48.4 -61.1 -49.1 17.9 -13.7 0.1 24 25 A A H X S+ 0 0 0 -4,-2.5 4,-2.4 2,-0.2 -1,-0.2 0.822 109.6 53.6 -64.5 -32.3 15.2 -12.1 -2.2 25 26 A T H X S+ 0 0 22 -4,-2.0 4,-1.9 2,-0.2 -1,-0.2 0.932 111.1 45.6 -66.0 -44.2 13.0 -11.6 0.8 26 27 A Q H X S+ 0 0 93 -4,-2.2 4,-1.6 2,-0.2 -2,-0.2 0.879 112.8 51.8 -63.6 -38.7 15.8 -9.8 2.6 27 28 A A H X S+ 0 0 0 -4,-2.6 4,-3.4 1,-0.2 -2,-0.2 0.927 110.2 47.3 -64.3 -45.1 16.5 -7.8 -0.5 28 29 A L H < S+ 0 0 30 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.815 111.3 51.7 -68.7 -30.7 12.9 -6.7 -0.9 29 30 A E H < S+ 0 0 124 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.819 120.3 35.0 -72.1 -30.3 12.7 -5.7 2.7 30 31 A K H < S+ 0 0 136 -4,-1.6 2,-0.3 -5,-0.2 -2,-0.2 0.853 120.3 38.5 -89.8 -39.0 15.9 -3.6 2.3 31 32 A Y < - 0 0 74 -4,-3.4 -1,-0.1 -5,-0.2 3,-0.0 -0.876 42.9-172.4-124.2 148.2 15.6 -2.2 -1.2 32 33 A N + 0 0 151 -2,-0.3 2,-0.4 -3,-0.1 -1,-0.1 0.612 68.2 84.0-105.1 -23.4 12.9 -0.8 -3.5 33 34 A I S >> S- 0 0 96 1,-0.1 4,-2.4 2,-0.0 3,-0.8 -0.731 75.5-135.1 -91.5 131.6 14.9 -0.5 -6.8 34 35 A E H 3> S+ 0 0 84 -2,-0.4 4,-2.9 1,-0.3 5,-0.2 0.874 103.2 52.3 -55.8 -43.4 15.2 -3.6 -8.9 35 36 A K H 3> S+ 0 0 159 1,-0.2 4,-2.2 2,-0.2 -1,-0.3 0.872 111.8 47.6 -61.9 -33.7 18.9 -3.2 -9.7 36 37 A D H <> S+ 0 0 61 -3,-0.8 4,-2.2 2,-0.2 -1,-0.2 0.896 111.5 49.8 -72.8 -42.1 19.6 -2.9 -5.9 37 38 A I H X S+ 0 0 4 -4,-2.4 4,-2.1 2,-0.2 -2,-0.2 0.951 112.8 47.3 -56.3 -50.9 17.5 -5.9 -5.1 38 39 A A H X S+ 0 0 11 -4,-2.9 4,-3.1 1,-0.2 -2,-0.2 0.891 111.2 52.0 -58.8 -42.5 19.3 -7.9 -7.8 39 40 A A H X S+ 0 0 34 -4,-2.2 4,-2.8 -5,-0.2 5,-0.2 0.896 108.4 50.1 -60.8 -43.9 22.7 -6.7 -6.5 40 41 A Y H X S+ 0 0 44 -4,-2.2 4,-2.1 2,-0.2 5,-0.2 0.955 114.9 43.8 -60.5 -49.7 22.0 -7.8 -2.9 41 42 A I H X S+ 0 0 0 -4,-2.1 4,-2.0 1,-0.2 5,-0.2 0.950 115.1 48.3 -62.8 -51.0 20.9 -11.2 -4.1 42 43 A K H X S+ 0 0 54 -4,-3.1 4,-2.4 1,-0.2 11,-0.3 0.919 112.5 48.2 -54.8 -48.5 23.8 -11.6 -6.5 43 44 A K H X S+ 0 0 128 -4,-2.8 4,-1.5 1,-0.2 -1,-0.2 0.859 111.0 49.8 -64.7 -36.1 26.4 -10.5 -3.9 44 45 A E H X S+ 0 0 43 -4,-2.1 4,-3.0 -5,-0.2 5,-0.2 0.831 112.2 47.2 -75.7 -32.5 25.1 -12.8 -1.2 45 46 A F H X S+ 0 0 0 -4,-2.0 4,-2.8 2,-0.2 -2,-0.2 0.871 108.2 55.4 -74.7 -36.5 25.0 -15.9 -3.5 46 47 A D H X S+ 0 0 34 -4,-2.4 4,-0.6 -5,-0.2 -2,-0.2 0.893 116.6 39.1 -56.2 -39.7 28.6 -15.0 -4.6 47 48 A K H < S+ 0 0 151 -4,-1.5 -2,-0.2 -5,-0.2 3,-0.2 0.944 125.6 34.1 -74.0 -52.2 29.5 -15.1 -0.9 48 49 A K H < S+ 0 0 118 -4,-3.0 -3,-0.2 1,-0.2 -2,-0.2 0.846 133.9 23.6 -76.5 -37.2 27.4 -18.1 0.2 49 50 A Y H < S- 0 0 55 -4,-2.8 -1,-0.2 -5,-0.2 -3,-0.2 0.110 112.4-100.6-124.2 21.0 27.5 -20.3 -2.8 50 51 A N < - 0 0 109 -4,-0.6 -3,-0.2 -3,-0.2 -1,-0.1 0.448 56.4 -38.9 76.3 146.0 30.7 -19.2 -4.7 51 52 A P S S+ 0 0 72 0, 0.0 37,-0.1 0, 0.0 35,-0.1 -0.364 92.7 50.4 -69.5 157.5 31.1 -16.8 -7.7 52 53 A T + 0 0 43 35,-0.3 35,-2.5 33,-0.1 2,-0.2 0.237 57.2 151.0-124.1 117.6 29.9 -16.1 -10.3 53 54 A W E -B 86 0A 0 -11,-0.3 2,-0.3 33,-0.2 33,-0.2 -0.531 22.6-159.7 -96.6 164.4 26.1 -15.4 -10.0 54 55 A H E -B 85 0A 66 31,-1.8 31,-2.2 -2,-0.2 2,-0.4 -0.991 8.5-164.8-143.6 137.5 23.9 -13.1 -12.0 55 56 A C E -B 84 0A 18 -2,-0.3 2,-0.4 29,-0.2 29,-0.2 -0.993 10.4-173.9-137.1 132.6 20.6 -11.8 -10.9 56 57 A I E -B 83 0A 75 27,-2.3 27,-2.9 -2,-0.4 2,-0.4 -0.981 7.3-173.9-121.6 134.1 17.7 -10.1 -12.8 57 58 A V E +B 82 0A 11 -2,-0.4 2,-0.3 25,-0.2 25,-0.2 -0.993 27.2 115.0-130.7 122.2 14.8 -8.7 -10.9 58 59 A G E -B 81 0A 4 23,-2.5 23,-2.7 -2,-0.4 3,-0.2 -0.997 62.2-120.9-173.5 170.7 11.7 -7.3 -12.7 59 60 A R S S+ 0 0 143 -2,-0.3 2,-0.3 1,-0.2 -1,-0.1 0.616 102.8 33.5 -96.7 -18.5 8.1 -7.3 -13.6 60 61 A N S S+ 0 0 137 21,-0.1 2,-0.3 -3,-0.1 -1,-0.2 -0.799 80.4 105.6-145.9 104.3 8.6 -7.6 -17.3 61 62 A F - 0 0 31 -2,-0.3 37,-2.1 -3,-0.2 2,-0.3 -0.958 38.7-153.3-165.5 152.5 11.4 -9.5 -19.0 62 63 A G E -D 97 0B 41 -2,-0.3 2,-0.3 35,-0.2 35,-0.3 -0.879 24.0-169.8-118.6 160.5 12.3 -12.6 -20.9 63 64 A S E -D 96 0B 24 33,-2.4 33,-1.6 -2,-0.3 2,-0.3 -0.953 24.0-162.1-146.0 161.3 15.7 -14.1 -20.8 64 65 A Y E +D 95 0B 177 -2,-0.3 2,-0.3 31,-0.2 31,-0.2 -0.851 33.1 156.6-145.9 112.1 17.9 -16.7 -22.4 65 66 A V E -D 94 0B 24 29,-2.4 29,-3.0 -2,-0.3 2,-0.5 -0.850 38.9-127.8-133.9 164.8 21.0 -17.6 -20.4 66 67 A T E +D 93 0B 61 -2,-0.3 2,-0.3 27,-0.3 27,-0.2 -0.979 33.6 178.6-117.9 126.9 23.5 -20.4 -19.9 67 68 A H E -D 92 0B 0 25,-2.7 25,-2.1 -2,-0.5 20,-0.2 -0.857 32.6-100.0-126.5 161.1 24.0 -21.7 -16.4 68 69 A E E > -D 91 0B 48 18,-2.7 3,-1.8 3,-0.3 18,-0.3 -0.541 58.1 -84.2 -76.0 146.0 26.0 -24.3 -14.6 69 70 A T T 3 S+ 0 0 64 21,-2.8 -1,-0.1 1,-0.3 -57,-0.0 -0.182 114.4 11.6 -50.3 137.8 24.1 -27.5 -13.7 70 71 A R T 3 S+ 0 0 129 -58,-0.1 -57,-0.6 1,-0.1 -1,-0.3 0.616 107.0 96.4 70.3 13.9 22.2 -27.3 -10.4 71 72 A H E < +A 12 0A 47 -3,-1.8 15,-2.3 -59,-0.2 2,-0.3 -0.330 56.9 94.8-132.9 52.8 22.7 -23.5 -10.3 72 73 A F E +AC 11 85A 0 -61,-2.3 -61,-3.2 13,-0.2 2,-0.3 -0.994 35.9 165.5-144.1 131.8 19.6 -21.9 -11.8 73 74 A I E -AC 10 84A 0 11,-2.2 11,-2.9 -2,-0.3 2,-0.4 -0.976 10.4-175.7-147.0 139.5 16.4 -20.6 -10.3 74 75 A Y E +AC 9 83A 10 -65,-2.6 -66,-2.4 -2,-0.3 -65,-1.8 -0.990 28.4 149.3-129.9 120.0 13.6 -18.4 -11.7 75 76 A F E -AC 7 82A 0 7,-2.9 7,-3.5 -2,-0.4 2,-0.4 -0.973 41.5-121.5-151.2 159.5 10.9 -17.4 -9.3 76 77 A Y E -AC 6 81A 22 -70,-2.9 -70,-2.3 -2,-0.3 2,-0.4 -0.833 15.0-173.5 -97.8 143.6 8.4 -14.9 -8.2 77 78 A L E > S-AC 5 80A 2 3,-2.7 3,-1.3 -2,-0.4 -72,-0.2 -0.899 73.5 -42.5-132.7 107.1 8.4 -13.3 -4.9 78 79 A G T 3 S- 0 0 32 -74,-2.1 -72,-0.1 -2,-0.4 -75,-0.0 -0.547 123.0 -26.6 66.2-134.6 5.2 -11.2 -4.7 79 80 A Q T 3 S+ 0 0 149 -2,-0.2 2,-0.4 -3,-0.1 -1,-0.2 0.488 120.3 92.1 -92.5 -1.5 4.8 -9.4 -8.0 80 81 A V E < - C 0 77A 8 -3,-1.3 -3,-2.7 18,-0.0 2,-0.3 -0.779 65.9-142.8 -97.1 134.7 8.5 -9.4 -8.9 81 82 A A E -BC 58 76A 0 -23,-2.7 -23,-2.5 -2,-0.4 2,-0.4 -0.727 14.3-161.3 -90.3 142.5 10.2 -12.1 -10.9 82 83 A I E -BC 57 75A 0 -7,-3.5 -7,-2.9 -2,-0.3 2,-0.5 -0.990 8.9-170.2-128.9 122.6 13.7 -13.1 -10.0 83 84 A L E +BC 56 74A 0 -27,-2.9 -27,-2.3 -2,-0.4 2,-0.4 -0.962 14.7 172.7-107.2 126.9 16.2 -14.9 -12.2 84 85 A L E +BC 55 73A 0 -11,-2.9 -11,-2.2 -2,-0.5 2,-0.3 -0.981 7.9 152.7-139.3 125.1 19.3 -16.0 -10.4 85 86 A F E -BC 54 72A 20 -31,-2.2 -31,-1.8 -2,-0.4 2,-0.5 -0.988 36.6-122.5-153.5 158.4 21.9 -18.2 -11.9 86 87 A K E +B 53 0A 22 -15,-2.3 -18,-2.7 -2,-0.3 2,-0.3 -0.894 35.3 151.5-107.4 130.3 25.6 -19.2 -11.8 87 88 A E 0 0 67 -35,-2.5 -35,-0.3 -2,-0.5 -20,-0.1 -0.838 360.0 360.0-157.2 122.3 27.9 -18.9 -14.8 88 89 A G 0 0 78 -2,-0.3 -1,-0.1 -37,-0.1 -20,-0.1 -0.298 360.0 360.0 95.2 360.0 31.6 -18.3 -14.6 89 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 90 287 C A 0 0 117 0, 0.0 -21,-2.8 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 -21.6 28.3 -29.0 -17.2 91 288 C T E -D 68 0B 72 -23,-0.3 2,-0.3 -21,-0.0 -23,-0.2 -0.850 360.0-165.4-130.1 163.0 25.9 -26.3 -18.4 92 289 C S E -D 67 0B 43 -25,-2.1 -25,-2.7 -2,-0.3 2,-0.4 -0.961 22.3-124.8-138.8 157.8 22.4 -25.9 -19.8 93 290 C A E -D 66 0B 46 -2,-0.3 2,-0.4 -27,-0.2 -27,-0.3 -0.861 28.9-167.5-100.8 143.1 20.6 -23.0 -21.5 94 291 C K E -D 65 0B 37 -29,-3.0 -29,-2.4 -2,-0.4 2,-0.4 -0.993 12.8-153.8-133.2 140.0 17.4 -21.7 -20.0 95 292 C A E -D 64 0B 63 -2,-0.4 2,-0.3 -31,-0.2 -31,-0.2 -0.899 15.1-174.8-106.7 139.2 14.6 -19.4 -21.2 96 293 C T E -D 63 0B 9 -33,-1.6 -33,-2.4 -2,-0.4 2,-0.3 -0.978 5.0-176.1-129.8 147.2 12.4 -17.4 -18.8 97 294 C Q E -D 62 0B 117 -2,-0.3 -35,-0.2 -35,-0.3 2,-0.1 -0.957 24.6-125.2-144.5 127.4 9.4 -15.2 -19.4 98 295 C T 0 0 6 -37,-2.1 -39,-0.1 -2,-0.3 -38,-0.0 -0.371 360.0 360.0 -65.1 147.2 7.4 -13.0 -17.0 99 296 C D 0 0 148 -2,-0.1 -1,-0.1 -39,-0.0 -18,-0.0 -0.248 360.0 360.0 -60.0 360.0 3.6 -13.6 -16.8