==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSFER 02-FEB-06 2CE1 . COMPND 2 MOLECULE: CYTOCHROME C6; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR M.J.MARCAIDA,B.G.SCHLARB-RIDLEY,J.A.R.WORRALL,J.WASTL, . 99 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6240.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 64.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 37.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A L 0 0 172 0, 0.0 2,-1.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 -44.5 45.6 -11.6 -3.2 2 4 A D > - 0 0 91 1,-0.2 4,-2.4 2,-0.1 5,-0.2 -0.710 360.0-176.3 -82.8 92.6 47.3 -8.6 -1.6 3 5 A I H > S+ 0 0 69 -2,-1.3 4,-2.8 1,-0.2 -1,-0.2 0.876 75.8 49.7 -62.0 -44.3 46.3 -9.5 2.0 4 6 A Q H > S+ 0 0 68 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.880 113.2 45.9 -66.8 -39.8 47.8 -6.4 3.7 5 7 A R H > S+ 0 0 107 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.899 114.8 48.5 -67.1 -42.5 46.1 -4.0 1.4 6 8 A G H X S+ 0 0 0 -4,-2.4 4,-2.8 2,-0.2 -2,-0.2 0.899 111.2 50.1 -63.7 -42.7 42.8 -5.9 1.7 7 9 A A H X S+ 0 0 25 -4,-2.8 4,-2.7 2,-0.2 -2,-0.2 0.901 110.4 49.8 -61.2 -46.3 43.1 -6.0 5.5 8 10 A T H X S+ 0 0 92 -4,-2.1 4,-1.6 2,-0.2 -2,-0.2 0.933 114.4 43.7 -61.1 -45.7 43.7 -2.3 5.6 9 11 A L H X S+ 0 0 10 -4,-2.2 4,-2.5 1,-0.2 5,-0.3 0.922 114.4 50.4 -66.2 -42.7 40.7 -1.5 3.4 10 12 A F H X>S+ 0 0 4 -4,-2.8 4,-2.5 1,-0.2 5,-2.1 0.910 106.6 55.9 -58.5 -44.5 38.5 -3.9 5.3 11 13 A N H <5S+ 0 0 105 -4,-2.7 5,-0.3 1,-0.2 -1,-0.2 0.894 116.2 35.3 -60.3 -39.6 39.5 -2.4 8.7 12 14 A R H <5S+ 0 0 173 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.803 128.0 32.4 -86.3 -29.6 38.4 1.0 7.6 13 15 A A H <5S+ 0 0 27 -4,-2.5 -3,-0.2 -5,-0.2 -2,-0.2 0.626 134.6 10.9-101.1 -16.5 35.3 0.3 5.5 14 16 A C T >X5S+ 0 0 24 -4,-2.5 4,-2.3 -5,-0.3 3,-1.1 0.648 97.2 84.9-133.8 -33.2 33.9 -2.9 7.1 15 17 A A T 34< S- 0 0 23 -4,-2.3 3,-2.0 5,-0.2 -1,-0.2 -0.421 81.2-173.2-113.5 54.6 32.0 -7.1 10.7 19 21 A D G > S- 0 0 80 -3,-0.3 3,-2.0 -2,-0.3 4,-0.1 -0.275 73.8 -17.3 -60.8 120.8 34.4 -7.1 13.6 20 22 A T G 3 S- 0 0 96 1,-0.3 -1,-0.3 2,-0.1 3,-0.1 0.840 134.6 -46.8 47.9 41.3 36.8 -10.1 13.1 21 23 A G G < S+ 0 0 0 -3,-2.0 10,-2.9 1,-0.1 11,-0.4 0.460 118.0 110.3 89.2 1.5 34.4 -11.6 10.6 22 24 A G < - 0 0 11 -3,-2.0 9,-0.3 8,-0.2 2,-0.2 0.279 65.7-121.5 -86.6-151.7 31.3 -11.2 12.7 23 25 A N - 0 0 32 7,-0.1 -5,-0.2 -5,-0.1 6,-0.1 -0.687 15.2-171.9-160.9 104.4 28.2 -8.9 12.5 24 26 A I S S+ 0 0 99 -7,-2.8 -6,-0.1 -2,-0.2 -7,-0.1 0.582 88.6 42.3 -78.8 -10.4 27.4 -6.6 15.3 25 27 A I S S+ 0 0 81 -8,-0.4 -1,-0.2 1,-0.2 -7,-0.1 0.788 120.1 30.9 -97.5 -44.1 24.1 -5.6 13.9 26 28 A Q S > S- 0 0 82 3,-0.1 3,-1.8 31,-0.0 -1,-0.2 -0.873 70.6-146.1-133.9 96.7 22.6 -8.9 12.6 27 29 A P T 3 S+ 0 0 116 0, 0.0 -3,-0.1 0, 0.0 -5,-0.0 -0.294 88.1 30.8 -54.8 143.9 23.3 -12.2 14.2 28 30 A G T 3 S+ 0 0 30 -5,-0.1 -6,-0.0 1,-0.0 0, 0.0 0.271 101.3 84.0 87.5 -8.9 23.4 -15.0 11.7 29 31 A A < + 0 0 24 -3,-1.8 -3,-0.1 -6,-0.1 -4,-0.1 -0.288 61.5 135.8-119.4 47.3 24.7 -12.8 8.9 30 32 A T - 0 0 22 -7,-0.1 -8,-0.2 1,-0.1 -7,-0.1 -0.153 68.1-109.0 -82.9-177.7 28.4 -12.9 9.7 31 33 A L S S+ 0 0 22 -10,-2.9 2,-0.2 -9,-0.3 -9,-0.2 0.219 79.6 118.3 -98.0 11.4 31.3 -13.4 7.3 32 34 A F S >> S- 0 0 85 -11,-0.4 4,-2.7 1,-0.1 3,-0.6 -0.536 78.5-113.5 -73.6 149.4 32.0 -16.9 8.7 33 35 A T H 3> S+ 0 0 40 60,-0.5 4,-3.1 1,-0.2 5,-0.3 0.860 113.2 58.4 -50.2 -46.1 31.7 -19.7 6.1 34 36 A K H 3> S+ 0 0 161 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.906 112.6 38.1 -53.8 -47.9 28.7 -21.2 7.8 35 37 A D H <> S+ 0 0 17 -3,-0.6 4,-2.4 2,-0.2 -1,-0.2 0.898 114.9 53.2 -74.8 -40.7 26.6 -18.1 7.5 36 38 A L H <>S+ 0 0 10 -4,-2.7 5,-2.9 1,-0.2 6,-0.5 0.936 112.9 45.9 -56.6 -46.2 27.9 -17.2 4.1 37 39 A E H ><5S+ 0 0 119 -4,-3.1 3,-1.5 -5,-0.2 -2,-0.2 0.925 111.7 50.0 -62.5 -49.8 26.9 -20.7 2.9 38 40 A R H 3<5S+ 0 0 142 -4,-2.2 -1,-0.2 -5,-0.3 -2,-0.2 0.889 112.5 48.5 -59.4 -36.1 23.5 -20.6 4.6 39 41 A N T 3<5S- 0 0 78 -4,-2.4 -1,-0.3 -5,-0.1 -2,-0.2 0.349 115.7-112.9 -89.4 6.2 22.7 -17.2 3.0 40 42 A G T < 5S+ 0 0 50 -3,-1.5 -3,-0.2 -4,-0.2 -2,-0.1 0.701 90.7 100.1 78.8 21.4 23.8 -18.3 -0.5 41 43 A V < + 0 0 31 -5,-2.9 2,-1.0 -6,-0.2 -4,-0.2 0.037 27.7 124.9-134.8 28.3 26.9 -16.0 -0.7 42 44 A D + 0 0 29 -6,-0.5 2,-0.3 -5,-0.1 -5,-0.1 -0.181 59.6 85.0 -86.4 45.8 30.0 -18.1 0.0 43 45 A T S > S- 0 0 52 -2,-1.0 4,-2.8 1,-0.1 5,-0.2 -0.982 84.7-118.7-140.1 153.0 31.7 -17.1 -3.2 44 46 A E H > S+ 0 0 62 -2,-0.3 4,-2.8 1,-0.2 5,-0.2 0.903 115.4 52.7 -54.6 -42.4 33.8 -14.1 -4.3 45 47 A E H > S+ 0 0 144 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.887 112.7 43.6 -66.6 -36.5 31.2 -13.1 -6.9 46 48 A E H > S+ 0 0 57 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.886 112.9 51.3 -74.0 -39.8 28.4 -13.1 -4.4 47 49 A I H X S+ 0 0 7 -4,-2.8 4,-2.3 2,-0.2 5,-0.2 0.926 110.9 50.0 -60.8 -44.6 30.4 -11.3 -1.8 48 50 A Y H X S+ 0 0 52 -4,-2.8 4,-2.5 -5,-0.2 -2,-0.2 0.939 110.3 50.6 -58.0 -47.0 31.2 -8.7 -4.4 49 51 A R H X S+ 0 0 131 -4,-1.9 4,-2.8 1,-0.2 5,-0.4 0.920 111.8 44.6 -61.1 -47.5 27.6 -8.3 -5.3 50 52 A V H X S+ 0 0 33 -4,-2.5 4,-2.2 1,-0.2 -1,-0.2 0.891 114.5 50.1 -68.1 -33.3 26.3 -7.8 -1.8 51 53 A T H < S+ 0 0 17 -4,-2.3 10,-2.8 -5,-0.2 11,-0.3 0.895 115.1 45.3 -65.5 -39.4 29.2 -5.4 -1.1 52 54 A Y H < S+ 0 0 19 -4,-2.5 10,-2.3 8,-0.2 -2,-0.2 0.944 129.7 19.6 -69.3 -50.6 28.3 -3.5 -4.3 53 55 A F H < S- 0 0 88 -4,-2.8 7,-0.5 7,-0.2 -3,-0.2 0.648 96.8-140.7-100.1 -18.5 24.5 -3.3 -3.9 54 56 A G E < -A 59 0A 14 -4,-2.2 2,-0.3 -5,-0.4 -1,-0.2 -0.141 5.8-126.7 81.2 177.0 23.8 -3.9 -0.2 55 57 A K E > -A 58 0A 161 3,-2.1 3,-2.8 1,-0.1 -1,-0.1 -0.851 55.4 -45.3-171.4 136.6 21.1 -5.9 1.4 56 58 A G T 3 S+ 0 0 83 1,-0.3 -1,-0.1 -2,-0.3 0, 0.0 -0.184 131.5 2.0 26.6-105.9 18.6 -5.0 4.1 57 59 A R T 3 S+ 0 0 168 -3,-0.1 -1,-0.3 2,-0.1 -3,-0.0 0.427 115.1 89.5 -91.9 -0.1 20.5 -3.1 6.8 58 60 A M E < S-A 55 0A 49 -3,-2.8 -3,-2.1 14,-0.0 2,-0.1 -0.874 74.7-132.2 -93.5 125.4 23.9 -3.2 5.0 59 61 A P E -A 54 0A 54 0, 0.0 -5,-0.3 0, 0.0 12,-0.3 -0.348 17.2-120.8 -69.7 148.6 24.6 -0.4 2.7 60 62 A G B -b 71 0B 0 10,-2.1 12,-3.1 -7,-0.5 -8,-0.2 -0.660 17.5-165.3 -83.5 149.7 25.9 -0.9 -0.8 61 63 A F + 0 0 33 -10,-2.8 16,-2.7 -2,-0.3 -9,-0.2 0.437 44.6 120.5-113.7 -5.6 29.3 0.6 -1.7 62 64 A G B > -c 77 0C 0 -10,-2.3 3,-1.6 -11,-0.3 16,-0.1 -0.255 69.5-123.0 -69.5 149.2 29.3 0.4 -5.5 63 65 A E T 3 S+ 0 0 75 14,-0.5 -1,-0.1 1,-0.3 13,-0.1 0.883 115.6 39.5 -55.1 -41.8 29.7 3.4 -7.7 64 66 A K T 3 S+ 0 0 164 2,-0.0 -1,-0.3 3,-0.0 -2,-0.1 0.230 82.8 137.2 -96.8 14.7 26.4 2.5 -9.4 65 67 A a < - 0 0 6 -3,-1.6 6,-0.1 -13,-0.1 -12,-0.1 -0.365 45.8-135.2 -57.5 139.0 24.6 1.3 -6.3 66 68 A T + 0 0 96 -13,-0.1 2,-0.1 1,-0.1 -2,-0.0 -0.969 63.8 35.4-160.1 151.6 21.1 2.7 -6.4 67 69 A P S > S- 0 0 80 0, 0.0 3,-2.2 0, 0.0 4,-0.4 0.679 76.1-124.6 -75.5 169.7 18.8 4.0 -5.0 68 70 A R G > S+ 0 0 177 1,-0.3 3,-1.5 2,-0.2 -3,-0.0 0.809 106.1 57.4 -48.8 -43.3 20.6 6.4 -2.7 69 71 A G G 3 S+ 0 0 67 1,-0.3 -1,-0.3 -10,-0.0 4,-0.1 0.626 103.2 54.2 -69.1 -13.3 19.0 5.2 0.5 70 72 A Q G < S+ 0 0 79 -3,-2.2 -10,-2.1 2,-0.1 2,-0.3 0.444 105.3 67.6 -95.2 -3.2 20.2 1.6 -0.0 71 73 A a B < S-b 60 0B 3 -3,-1.5 -10,-0.2 -4,-0.4 -18,-0.1 -0.773 97.4 -79.3-120.0 158.7 23.8 2.8 -0.4 72 74 A T - 0 0 26 -12,-3.1 -1,-0.1 -2,-0.3 -2,-0.1 -0.213 25.5-147.8 -50.2 137.5 26.5 4.3 1.8 73 75 A F S S+ 0 0 138 -4,-0.1 -1,-0.1 2,-0.1 3,-0.1 0.507 83.9 75.4 -85.4 -5.9 26.2 8.0 2.4 74 76 A G S S- 0 0 39 1,-0.2 2,-0.0 0, 0.0 -3,-0.0 -0.173 108.9 -53.1 -81.7-170.1 30.0 8.1 2.5 75 77 A P - 0 0 118 0, 0.0 -1,-0.2 0, 0.0 2,-0.1 -0.352 58.6-116.9 -66.9 143.1 32.1 7.8 -0.6 76 78 A R - 0 0 61 -3,-0.1 2,-0.3 -13,-0.1 -14,-0.2 -0.409 28.1-119.8 -69.8 155.9 31.5 4.9 -2.9 77 79 A L B -c 62 0C 12 -16,-2.7 -14,-0.5 -2,-0.1 2,-0.1 -0.747 26.0-110.8 -95.0 149.3 34.3 2.3 -3.4 78 80 A Q >> - 0 0 112 -2,-0.3 4,-2.3 -16,-0.1 3,-0.5 -0.396 29.9-109.3 -74.2 155.9 35.9 1.7 -6.8 79 81 A D H 3> S+ 0 0 86 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.887 120.4 54.0 -50.1 -42.8 35.2 -1.7 -8.5 80 82 A E H 3> S+ 0 0 143 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.856 108.0 49.5 -65.1 -36.4 38.9 -2.7 -7.9 81 83 A E H <> S+ 0 0 42 -3,-0.5 4,-2.5 2,-0.2 -1,-0.2 0.910 111.1 48.5 -68.1 -43.1 38.5 -1.9 -4.1 82 84 A I H X S+ 0 0 0 -4,-2.3 4,-2.5 2,-0.2 -2,-0.2 0.873 110.9 51.9 -65.4 -35.9 35.3 -4.0 -3.9 83 85 A K H X S+ 0 0 110 -4,-2.5 4,-2.4 -5,-0.2 5,-0.2 0.938 109.9 48.5 -63.5 -46.0 37.1 -6.8 -5.8 84 86 A L H X S+ 0 0 10 -4,-2.1 4,-2.5 1,-0.2 -2,-0.2 0.927 112.8 48.8 -59.6 -44.4 40.0 -6.7 -3.3 85 87 A L H X S+ 0 0 2 -4,-2.5 4,-3.0 2,-0.2 5,-0.2 0.912 110.6 49.6 -62.0 -42.8 37.5 -6.7 -0.4 86 88 A A H X S+ 0 0 0 -4,-2.5 4,-2.3 1,-0.2 -2,-0.2 0.909 112.9 47.1 -66.1 -40.4 35.6 -9.7 -1.8 87 89 A E H X S+ 0 0 55 -4,-2.4 4,-2.3 2,-0.2 -1,-0.2 0.906 113.1 50.0 -63.5 -43.3 38.8 -11.7 -2.3 88 90 A F H X S+ 0 0 13 -4,-2.5 4,-3.0 -5,-0.2 -2,-0.2 0.941 111.6 47.0 -61.7 -48.2 39.9 -10.8 1.2 89 91 A V H X S+ 0 0 11 -4,-3.0 4,-3.0 2,-0.2 5,-0.3 0.923 112.8 48.8 -60.9 -45.4 36.6 -11.8 2.8 90 92 A K H X S+ 0 0 53 -4,-2.3 4,-2.3 -5,-0.2 -1,-0.2 0.935 113.5 47.4 -61.6 -43.5 36.5 -15.1 0.9 91 93 A F H X S+ 0 0 82 -4,-2.3 4,-1.7 2,-0.2 -2,-0.2 0.944 114.6 45.9 -60.3 -50.1 40.1 -15.8 1.9 92 94 A Q H X>S+ 0 0 27 -4,-3.0 5,-2.8 2,-0.2 4,-0.7 0.910 112.0 50.7 -63.3 -43.3 39.5 -15.0 5.6 93 95 A A H ><5S+ 0 0 3 -4,-3.0 3,-1.2 1,-0.2 -60,-0.5 0.926 109.2 51.9 -60.6 -43.6 36.3 -17.0 5.7 94 96 A D H 3<5S+ 0 0 90 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.848 112.3 46.7 -60.0 -34.9 38.1 -20.0 4.3 95 97 A Q H 3<5S- 0 0 121 -4,-1.7 -1,-0.3 -5,-0.1 -2,-0.2 0.486 118.3-111.6 -84.5 -7.6 40.8 -19.6 6.9 96 98 A G T <<5 - 0 0 43 -3,-1.2 -3,-0.2 -4,-0.7 -2,-0.1 0.707 59.3 -73.6 82.6 22.1 38.3 -19.2 9.8 97 99 A W < - 0 0 14 -5,-2.8 -1,-0.1 -6,-0.1 -4,-0.1 0.969 62.4-139.2 56.5 62.2 39.1 -15.5 10.5 98 100 A P 0 0 79 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.211 360.0 360.0 -54.2 137.8 42.4 -16.0 12.2 99 101 A T 0 0 167 -79,-0.0 -2,-0.0 0, 0.0 0, 0.0 -0.894 360.0 360.0-118.5 360.0 43.1 -13.7 15.2