==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 19-MAY-05 2CPN . COMPND 2 MOLECULE: TAR RNA-BINDING PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7127.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 65.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 19.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 27.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 143 A G 0 0 125 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-148.6 -17.3 24.9 11.2 2 144 A S - 0 0 126 2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.983 360.0-151.7-162.5 153.7 -13.9 23.6 10.5 3 145 A S - 0 0 130 -2,-0.3 2,-0.4 2,-0.0 0, 0.0 -0.987 6.4-158.1-134.4 142.8 -10.3 24.7 9.9 4 146 A G + 0 0 79 -2,-0.4 2,-0.3 0, 0.0 -2,-0.0 -0.975 24.1 143.9-125.7 133.2 -7.4 23.2 7.9 5 147 A S + 0 0 123 -2,-0.4 -2,-0.0 1,-0.1 0, 0.0 -0.881 21.0 179.2-166.9 131.4 -3.7 23.8 8.3 6 148 A S - 0 0 117 -2,-0.3 -1,-0.1 3,-0.0 0, 0.0 0.835 36.7-146.6 -99.9 -48.3 -0.5 21.7 8.0 7 149 A G - 0 0 36 2,-0.0 2,-0.6 1,-0.0 -2,-0.0 0.151 32.0 -60.6 91.9 149.6 2.2 24.2 8.8 8 150 A P + 0 0 138 0, 0.0 2,-0.4 0, 0.0 -1,-0.0 -0.533 59.6 177.3 -69.8 111.8 5.8 24.6 7.5 9 151 A V - 0 0 101 -2,-0.6 3,-0.1 3,-0.0 -2,-0.0 -0.971 32.5-110.2-122.6 130.2 7.7 21.4 8.3 10 152 A S - 0 0 98 -2,-0.4 2,-0.9 1,-0.1 0, 0.0 -0.175 43.0 -97.7 -54.6 144.1 11.3 20.6 7.4 11 153 A P - 0 0 105 0, 0.0 2,-0.8 0, 0.0 -1,-0.1 -0.534 35.7-143.4 -69.7 103.3 11.7 17.9 4.8 12 154 A Q - 0 0 143 -2,-0.9 2,-0.7 -3,-0.1 -3,-0.0 -0.576 13.2-137.4 -72.5 106.4 12.5 14.7 6.7 13 155 A Q + 0 0 169 -2,-0.8 2,-0.3 0, 0.0 -1,-0.1 -0.529 42.4 152.1 -68.9 109.5 15.1 12.8 4.6 14 156 A S - 0 0 92 -2,-0.7 3,-0.1 1,-0.1 -2,-0.0 -0.992 49.4 -84.1-142.1 148.1 14.0 9.2 4.8 15 157 A E - 0 0 162 -2,-0.3 2,-0.4 1,-0.1 -1,-0.1 0.105 54.8 -97.3 -42.2 161.6 14.3 6.1 2.5 16 158 A C + 0 0 114 4,-0.0 -1,-0.1 5,-0.0 0, 0.0 -0.722 53.8 153.8 -91.3 136.1 11.7 5.7 -0.2 17 159 A N > - 0 0 77 -2,-0.4 4,-0.6 1,-0.1 -3,-0.0 -0.969 43.1-139.7-161.6 144.0 8.7 3.5 0.4 18 160 A P H >> S+ 0 0 25 0, 0.0 4,-2.9 0, 0.0 3,-1.4 0.940 101.5 61.1 -69.7 -49.9 5.1 3.1 -0.8 19 161 A V H 3> S+ 0 0 45 1,-0.3 4,-0.5 2,-0.2 54,-0.0 0.834 110.6 43.6 -47.0 -36.4 3.6 2.2 2.5 20 162 A G H 34 S+ 0 0 31 2,-0.1 4,-0.4 1,-0.1 -1,-0.3 0.681 115.5 49.4 -84.2 -18.8 4.8 5.6 3.7 21 163 A A H XX S+ 0 0 31 -3,-1.4 4,-2.2 -4,-0.6 3,-2.1 0.933 103.3 54.9 -83.6 -53.7 3.6 7.3 0.6 22 164 A L H 3X S+ 0 0 4 -4,-2.9 4,-2.2 1,-0.3 5,-0.2 0.790 104.0 60.3 -50.6 -28.9 0.0 6.0 0.3 23 165 A Q H 3X S+ 0 0 75 -4,-0.5 4,-0.9 -5,-0.4 -1,-0.3 0.808 108.0 43.2 -70.1 -30.1 -0.4 7.4 3.8 24 166 A E H <> S+ 0 0 126 -3,-2.1 4,-1.1 -4,-0.4 -2,-0.2 0.888 115.0 47.6 -81.8 -43.1 0.4 10.9 2.6 25 167 A L H >X S+ 0 0 59 -4,-2.2 4,-2.0 2,-0.2 3,-1.2 0.962 105.9 57.6 -62.5 -54.1 -1.7 10.7 -0.6 26 168 A V H >X>S+ 0 0 5 -4,-2.2 4,-2.5 1,-0.3 5,-1.9 0.901 104.1 52.7 -42.0 -54.2 -4.8 9.3 1.1 27 169 A V H 3<5S+ 0 0 102 -4,-0.9 -1,-0.3 1,-0.3 -2,-0.2 0.850 109.8 49.6 -52.6 -36.9 -4.9 12.3 3.5 28 170 A Q H <<5S+ 0 0 164 -3,-1.2 -1,-0.3 -4,-1.1 -2,-0.2 0.817 114.7 43.5 -72.8 -31.5 -4.8 14.5 0.4 29 171 A K H <<5S- 0 0 105 -4,-2.0 -2,-0.2 -3,-0.6 -1,-0.2 0.686 116.2-114.9 -85.8 -20.7 -7.6 12.6 -1.2 30 172 A G T <5 + 0 0 61 -4,-2.5 -3,-0.2 -5,-0.3 2,-0.2 0.829 69.1 131.8 89.5 36.3 -9.6 12.5 2.0 31 173 A W < - 0 0 47 -5,-1.9 -1,-0.2 -6,-0.1 2,-0.2 -0.642 53.0-110.0-114.3 172.8 -9.5 8.7 2.6 32 174 A R - 0 0 185 -2,-0.2 25,-0.3 1,-0.2 3,-0.1 -0.617 53.1 -63.7-101.5 162.5 -8.7 6.4 5.5 33 175 A L - 0 0 123 -2,-0.2 -1,-0.2 1,-0.1 -10,-0.1 0.011 65.2 -99.1 -41.2 144.9 -5.7 4.2 6.1 34 176 A P - 0 0 23 0, 0.0 2,-0.5 0, 0.0 22,-0.2 -0.314 32.5-118.3 -69.7 152.5 -5.5 1.3 3.5 35 177 A E E -A 55 0A 98 20,-1.2 20,-1.9 -3,-0.1 2,-0.6 -0.821 23.4-162.0 -97.8 127.8 -6.7 -2.2 4.4 36 178 A Y E +A 54 0A 58 -2,-0.5 2,-0.3 18,-0.2 18,-0.2 -0.934 22.0 153.5-113.7 117.4 -4.2 -5.0 4.3 37 179 A T E -A 53 0A 75 16,-1.2 16,-2.3 -2,-0.6 2,-0.5 -0.995 42.1-120.0-145.4 135.8 -5.5 -8.6 4.2 38 180 A V E +A 52 0A 43 -2,-0.3 14,-0.3 14,-0.2 3,-0.1 -0.619 30.9 172.3 -77.5 122.2 -4.0 -11.9 2.8 39 181 A T E + 0 0 86 12,-2.8 2,-0.3 -2,-0.5 -1,-0.2 0.912 63.4 12.4 -92.6 -60.9 -6.0 -13.4 0.0 40 182 A Q E -A 51 0A 126 11,-1.2 11,-3.2 2,-0.0 2,-0.3 -0.809 59.6-159.0-119.1 160.4 -4.0 -16.2 -1.3 41 183 A E E +A 50 0A 106 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.917 22.4 153.4-144.6 114.0 -0.9 -18.1 -0.1 42 184 A S E +A 49 0A 76 7,-1.9 7,-1.8 -2,-0.3 -2,-0.0 -0.867 20.5 82.4-134.6 167.7 1.5 -20.1 -2.2 43 185 A G - 0 0 35 -2,-0.3 5,-0.2 5,-0.2 6,-0.1 -0.139 66.0 -82.9 114.5 149.3 5.1 -21.2 -2.2 44 186 A P - 0 0 61 0, 0.0 5,-0.1 0, 0.0 -2,-0.0 0.136 46.8 -96.2 -69.7-169.2 7.3 -23.9 -0.6 45 187 A A S S+ 0 0 81 1,-0.1 3,-0.5 3,-0.1 0, 0.0 0.920 122.2 49.7 -78.7 -47.6 8.8 -23.9 2.8 46 188 A H S S+ 0 0 159 1,-0.3 2,-0.4 0, 0.0 -1,-0.1 0.850 127.4 26.5 -59.9 -35.2 12.3 -22.6 1.8 47 189 A R S S- 0 0 191 2,-0.0 -1,-0.3 0, 0.0 2,-0.2 -0.796 79.5-174.8-134.5 91.8 10.6 -19.8 -0.1 48 190 A K - 0 0 103 -3,-0.5 2,-0.4 -2,-0.4 -5,-0.2 -0.603 3.2-166.6 -87.1 146.7 7.1 -18.8 1.1 49 191 A E E -A 42 0A 91 -7,-1.8 -7,-1.9 -2,-0.2 2,-0.4 -0.980 3.4-162.2-138.7 123.9 5.0 -16.3 -0.7 50 192 A F E -AB 41 65A 50 15,-2.5 15,-2.2 -2,-0.4 2,-0.9 -0.880 13.0-142.7-108.3 135.3 1.9 -14.5 0.6 51 193 A T E -AB 40 64A 19 -11,-3.2 -12,-2.8 -2,-0.4 -11,-1.2 -0.801 25.4-179.7 -99.2 97.8 -0.6 -12.8 -1.7 52 194 A M E -AB 38 63A 13 -2,-0.9 11,-2.6 11,-0.6 2,-0.4 -0.796 11.2-155.1-100.2 138.9 -1.9 -9.6 0.0 53 195 A T E -AB 37 62A 16 -16,-2.3 -16,-1.2 -2,-0.4 2,-0.7 -0.929 11.5-135.2-116.2 136.9 -4.4 -7.3 -1.5 54 196 A C E -AB 36 61A 0 7,-3.3 7,-1.8 -2,-0.4 2,-0.9 -0.799 15.4-159.9 -93.2 115.2 -4.9 -3.6 -0.8 55 197 A R E -AB 35 60A 165 -20,-1.9 -20,-1.2 -2,-0.7 5,-0.2 -0.818 14.7-175.2 -98.5 102.7 -8.5 -2.6 -0.3 56 198 A V E > - B 0 59A 16 3,-2.9 3,-1.0 -2,-0.9 -23,-0.1 -0.607 41.4 -98.7 -95.8 157.3 -8.9 1.1 -0.8 57 199 A E T 3 S- 0 0 101 -25,-0.3 -1,-0.1 1,-0.3 -26,-0.0 0.881 119.1 -3.1 -34.4 -65.4 -12.1 3.2 -0.3 58 200 A R T 3 S+ 0 0 190 -3,-0.0 2,-0.3 2,-0.0 -1,-0.3 -0.070 130.4 70.1-122.9 31.1 -12.8 3.2 -4.1 59 201 A F E < -B 56 0A 64 -3,-1.0 -3,-2.9 2,-0.0 2,-0.3 -0.983 53.0-169.9-146.7 155.5 -9.7 1.3 -5.3 60 202 A I E +B 55 0A 106 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.994 6.3 173.4-150.0 141.4 -8.2 -2.2 -5.1 61 203 A E E -B 54 0A 24 -7,-1.8 -7,-3.3 -2,-0.3 2,-0.3 -0.922 21.3-140.9-153.2 122.8 -4.9 -3.8 -6.0 62 204 A I E +B 53 0A 93 -2,-0.3 2,-0.3 -9,-0.3 -9,-0.3 -0.623 26.9 176.8 -85.0 140.3 -3.6 -7.3 -5.4 63 205 A G E -B 52 0A 4 -11,-2.6 -11,-0.6 -2,-0.3 2,-0.3 -0.920 15.4-156.1-140.0 165.6 -0.0 -7.9 -4.4 64 206 A S E +B 51 0A 36 -2,-0.3 2,-0.3 -13,-0.3 -13,-0.2 -0.988 12.9 168.6-143.4 150.9 2.4 -10.6 -3.4 65 207 A G E -B 50 0A 6 -15,-2.2 -15,-2.5 -2,-0.3 6,-0.2 -0.943 46.5-112.4-164.5 140.5 5.6 -10.9 -1.4 66 208 A T S S+ 0 0 76 -2,-0.3 2,-0.3 -17,-0.3 -1,-0.1 0.841 107.9 27.5 -38.1 -44.1 7.9 -13.6 0.1 67 209 A S S > S- 0 0 64 -18,-0.1 4,-2.9 1,-0.1 5,-0.1 -0.780 85.8-114.0-120.2 164.8 6.7 -12.3 3.5 68 210 A K H > S+ 0 0 119 -2,-0.3 4,-2.1 2,-0.2 -1,-0.1 0.947 116.0 52.6 -61.0 -50.8 3.6 -10.6 4.8 69 211 A K H > S+ 0 0 156 1,-0.2 4,-1.0 2,-0.2 -1,-0.2 0.901 113.9 44.2 -52.1 -45.0 5.5 -7.3 5.7 70 212 A L H >> S+ 0 0 66 2,-0.2 4,-2.2 1,-0.2 3,-0.8 0.955 106.6 59.4 -65.9 -51.9 6.8 -7.2 2.1 71 213 A A H 3X S+ 0 0 0 -4,-2.9 4,-2.3 1,-0.3 5,-0.3 0.909 98.5 59.0 -41.4 -57.5 3.5 -8.2 0.4 72 214 A K H 3X S+ 0 0 49 -4,-2.1 4,-2.8 1,-0.3 -1,-0.3 0.879 109.5 44.3 -40.3 -50.3 1.8 -5.1 1.9 73 215 A R H X S+ 0 0 38 -4,-2.9 4,-0.9 1,-0.3 3,-0.6 0.910 110.0 46.5 -40.4 -59.8 3.3 0.5 -4.4 78 220 A K H 3X S+ 0 0 113 -4,-1.2 4,-2.2 -5,-0.3 3,-0.5 0.895 107.4 58.7 -52.3 -44.0 1.1 -0.6 -7.3 79 221 A M H 3X>S+ 0 0 0 -4,-2.3 4,-3.2 1,-0.2 5,-0.5 0.893 92.4 69.5 -53.7 -43.1 -1.9 1.2 -5.8 80 222 A L H