==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 19-MAY-05 2CQF . COMPND 2 MOLECULE: RNA-BINDING PROTEIN LIN-28; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.SOMEYA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 63 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5904.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 17 27.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 130 A G 0 0 125 0, 0.0 2,-0.8 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-150.0 -33.2 7.3 -11.0 2 131 A S + 0 0 130 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.857 360.0 151.0-104.7 103.6 -31.7 8.8 -7.8 3 132 A S + 0 0 125 -2,-0.8 2,-0.3 2,-0.0 0, 0.0 -0.928 7.6 149.1-131.1 155.2 -28.5 6.8 -6.8 4 133 A G - 0 0 82 -2,-0.3 2,-0.3 3,-0.0 -2,-0.0 -0.917 40.0 -81.7-163.5-172.1 -25.3 7.7 -5.0 5 134 A S - 0 0 83 -2,-0.3 3,-0.0 1,-0.1 -2,-0.0 -0.792 28.9-124.5-109.6 152.3 -22.5 6.5 -2.7 6 135 A S S S- 0 0 134 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 0.707 79.9 -69.3 -64.6 -19.1 -22.5 6.2 1.1 7 136 A G - 0 0 42 1,-0.0 2,-0.8 2,-0.0 -1,-0.1 0.468 48.5-155.9 125.5 89.9 -19.5 8.5 1.1 8 137 A D + 0 0 130 8,-0.0 2,-0.2 3,-0.0 -3,-0.0 -0.818 27.3 163.7 -95.7 109.9 -16.1 7.4 -0.3 9 138 A R - 0 0 167 -2,-0.8 2,-0.3 10,-0.1 7,-0.2 -0.712 51.9 -59.7-119.5 171.3 -13.3 9.5 1.3 10 139 A C - 0 0 3 5,-1.8 2,-1.2 8,-0.5 4,-0.4 -0.312 43.5-153.2 -53.5 109.4 -9.5 9.1 1.6 11 140 A Y S S+ 0 0 119 -2,-0.3 -1,-0.2 1,-0.2 8,-0.0 -0.139 85.7 56.7 -80.1 42.3 -9.0 5.9 3.5 12 141 A N S S- 0 0 36 -2,-1.2 -1,-0.2 15,-0.1 -2,-0.0 0.545 126.8 -4.9-133.5 -56.6 -5.7 7.1 4.8 13 142 A C S S- 0 0 68 -3,-0.1 -2,-0.1 2,-0.1 7,-0.0 0.709 96.5-103.1-114.0 -40.5 -6.1 10.4 6.7 14 143 A G + 0 0 47 -4,-0.4 2,-0.5 1,-0.2 -3,-0.1 0.672 56.0 163.0 118.0 33.3 -9.8 11.3 6.2 15 144 A G - 0 0 7 1,-0.2 -5,-1.8 -5,-0.2 -1,-0.2 -0.720 18.1-179.0 -88.1 127.1 -9.8 14.0 3.5 16 145 A L S S+ 0 0 143 -2,-0.5 -1,-0.2 -7,-0.2 -8,-0.0 0.819 82.4 52.4 -89.9 -36.7 -13.1 14.7 1.8 17 146 A D S S+ 0 0 137 2,-0.0 2,-0.2 -7,-0.0 -1,-0.1 0.954 114.4 41.0 -64.0 -51.8 -11.8 17.4 -0.6 18 147 A H S S- 0 0 45 1,-0.0 -8,-0.5 -8,-0.0 2,-0.3 -0.536 87.6-115.5 -96.0 164.1 -9.0 15.3 -1.9 19 148 A H > - 0 0 128 -2,-0.2 4,-3.3 -10,-0.1 -3,-0.1 -0.725 26.7-110.7-100.6 149.9 -9.0 11.7 -2.9 20 149 A A T 4 S+ 0 0 32 -2,-0.3 -1,-0.1 1,-0.2 -10,-0.0 0.843 121.3 49.5 -42.5 -40.6 -6.9 8.9 -1.2 21 150 A K T 4 S+ 0 0 166 1,-0.2 -1,-0.2 3,-0.0 -3,-0.0 0.980 111.9 44.1 -65.1 -58.8 -4.9 8.8 -4.4 22 151 A E T 4 S+ 0 0 123 2,-0.0 -2,-0.2 0, 0.0 -1,-0.2 0.895 91.8 108.5 -53.3 -43.6 -4.2 12.5 -4.8 23 152 A C < - 0 0 21 -4,-3.3 -3,-0.0 1,-0.1 -4,-0.0 0.115 58.2-156.0 -33.7 148.1 -3.4 12.7 -1.0 24 153 A K + 0 0 200 2,-0.1 -1,-0.1 3,-0.0 -4,-0.0 0.816 58.0 103.6 -99.9 -43.7 0.3 13.2 -0.3 25 154 A L S S- 0 0 100 1,-0.1 -12,-0.1 2,-0.0 0, 0.0 0.106 86.5 -86.1 -37.7 153.0 0.6 11.8 3.2 26 155 A P - 0 0 96 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.412 45.5-106.5 -69.7 139.5 2.2 8.3 3.4 27 156 A P - 0 0 74 0, 0.0 16,-0.1 0, 0.0 -15,-0.1 -0.494 42.9-100.7 -69.8 127.0 -0.1 5.2 3.0 28 157 A Q - 0 0 104 -2,-0.3 -15,-0.0 1,-0.2 -16,-0.0 0.097 34.6-103.8 -41.3 157.9 -0.8 3.4 6.2 29 158 A P S S+ 0 0 107 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 0.387 84.2 125.1 -69.8 6.3 1.3 0.2 6.8 30 159 A K S S- 0 0 135 1,-0.1 3,-0.1 11,-0.0 2,-0.1 0.212 73.0 -65.6 -53.6-174.8 -1.9 -1.7 5.9 31 160 A K - 0 0 100 1,-0.2 7,-0.2 10,-0.1 -1,-0.1 -0.396 69.4 -74.0 -77.5 156.1 -1.9 -4.3 3.1 32 161 A C > - 0 0 1 8,-0.8 4,-0.8 5,-0.6 -1,-0.2 -0.259 37.4-152.6 -51.7 122.6 -1.3 -3.4 -0.5 33 162 A H T 4 S+ 0 0 99 1,-0.2 -1,-0.2 2,-0.1 8,-0.1 -0.083 87.7 53.0 -90.3 34.9 -4.4 -1.7 -1.8 34 163 A F T 4 S+ 0 0 110 0, 0.0 -1,-0.2 0, 0.0 -2,-0.0 0.585 126.5 6.8-130.3 -53.4 -3.6 -2.9 -5.4 35 164 A C T 4 S- 0 0 49 2,-0.1 -2,-0.1 0, 0.0 3,-0.1 0.021 93.8-114.4-125.0 24.7 -3.1 -6.7 -5.4 36 165 A Q < + 0 0 143 -4,-0.8 2,-1.6 1,-0.2 -3,-0.1 0.816 58.4 162.8 44.6 34.6 -4.1 -7.4 -1.8 37 166 A S - 0 0 25 1,-0.2 -5,-0.6 -5,-0.1 -1,-0.2 -0.592 21.0-175.4 -86.0 79.7 -0.4 -8.4 -1.4 38 167 A I S S+ 0 0 134 -2,-1.6 -1,-0.2 1,-0.2 -2,-0.1 0.724 79.3 65.6 -46.7 -21.4 -0.2 -8.4 2.4 39 168 A S S S+ 0 0 103 -3,-0.1 -1,-0.2 -7,-0.1 2,-0.1 0.999 109.6 18.4 -65.6 -75.2 3.5 -9.1 1.8 40 169 A H S S- 0 0 49 1,-0.1 -8,-0.8 -8,-0.0 2,-0.2 -0.238 82.7-114.6 -89.4-178.5 4.7 -6.0 0.0 41 170 A M > - 0 0 78 -10,-0.1 4,-2.3 -9,-0.1 3,-0.2 -0.572 25.5-105.8-112.0 176.9 3.1 -2.5 -0.1 42 171 A V T 4 S+ 0 0 19 1,-0.2 -11,-0.0 2,-0.2 -1,-0.0 0.683 118.1 59.9 -75.7 -18.3 1.6 -0.3 -2.8 43 172 A A T 4 S+ 0 0 87 1,-0.1 -1,-0.2 -16,-0.1 -3,-0.0 0.805 118.8 26.8 -78.3 -31.2 4.7 1.9 -2.7 44 173 A S T 4 S+ 0 0 97 -3,-0.2 -2,-0.2 4,-0.0 -1,-0.1 0.674 87.2 129.8-102.0 -25.0 7.0 -1.0 -3.7 45 174 A C X - 0 0 4 -4,-2.3 4,-0.8 1,-0.1 -3,-0.0 -0.004 46.4-156.5 -35.3 118.6 4.4 -3.1 -5.5 46 175 A P T >4 S+ 0 0 87 0, 0.0 3,-0.6 0, 0.0 -1,-0.1 0.904 88.5 59.5 -69.8 -43.5 6.1 -4.0 -8.9 47 176 A L G >4 S+ 0 0 82 1,-0.2 3,-2.1 2,-0.2 -2,-0.1 0.897 97.5 61.4 -52.7 -44.1 2.8 -4.5 -10.8 48 177 A K G 34 S+ 0 0 90 1,-0.3 -1,-0.2 -6,-0.0 -3,-0.1 0.898 108.7 42.2 -50.1 -45.6 1.8 -1.0 -10.0 49 178 A A G << S+ 0 0 80 -4,-0.8 -1,-0.3 -3,-0.6 -2,-0.2 -0.144 88.7 172.0 -95.4 37.8 4.8 0.3 -11.9 50 179 A Q < - 0 0 133 -3,-2.1 2,-0.5 1,-0.1 -3,-0.1 -0.130 29.8-126.6 -48.4 140.1 4.3 -2.3 -14.7 51 180 A Q S S+ 0 0 176 1,-0.1 -1,-0.1 2,-0.0 -2,-0.0 -0.805 72.7 64.2 -97.2 131.1 6.6 -1.7 -17.7 52 181 A G - 0 0 51 -2,-0.5 -1,-0.1 1,-0.0 -2,-0.0 0.531 49.4-159.7 121.0 88.8 5.1 -1.4 -21.2 53 182 A P + 0 0 137 0, 0.0 2,-0.4 0, 0.0 -2,-0.0 0.513 59.4 120.2 -69.8 -3.8 2.7 1.4 -22.1 54 183 A S + 0 0 90 1,-0.1 -3,-0.0 2,-0.1 0, 0.0 -0.508 32.8 170.2 -68.1 117.6 1.5 -0.8 -25.0 55 184 A A + 0 0 84 -2,-0.4 2,-0.8 3,-0.0 3,-0.1 -0.237 31.3 124.4-122.6 42.9 -2.2 -1.4 -24.6 56 185 A Q S S- 0 0 154 1,-0.3 -2,-0.1 0, 0.0 -1,-0.0 -0.767 88.0 -41.7-107.0 87.0 -3.0 -3.1 -27.9 57 186 A G - 0 0 67 -2,-0.8 2,-0.8 1,-0.2 -1,-0.3 0.850 60.1-140.8 60.2 110.7 -4.6 -6.4 -27.1 58 187 A S - 0 0 117 1,-0.2 3,-0.3 -3,-0.1 -1,-0.2 -0.825 64.3 -54.5-106.6 95.5 -3.0 -8.3 -24.2 59 188 A G - 0 0 63 -2,-0.8 2,-0.9 1,-0.2 -1,-0.2 0.897 66.4-142.1 35.4 75.6 -3.0 -12.0 -25.0 60 189 A P + 0 0 122 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.532 48.2 126.6 -69.7 101.5 -6.7 -12.4 -25.7 61 190 A S - 0 0 107 -2,-0.9 2,-0.4 -3,-0.3 -3,-0.0 -0.950 51.7-124.7-150.8 168.1 -7.6 -15.8 -24.3 62 191 A S 0 0 129 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.978 360.0 360.0-124.5 129.0 -10.1 -17.5 -21.9 63 192 A G 0 0 128 -2,-0.4 -2,-0.1 0, 0.0 0, 0.0 -0.616 360.0 360.0 83.0 360.0 -9.1 -19.7 -19.0