==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 20-MAY-05 2CQG . COMPND 2 MOLECULE: TAR DNA-BINDING PROTEIN-43; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8124.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 50.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 21.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 89 A G 0 0 122 0, 0.0 2,-0.6 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 160.1 12.5 4.2 31.1 2 90 A S + 0 0 136 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.598 360.0 126.9 -74.9 115.8 12.7 6.8 28.3 3 91 A S + 0 0 119 -2,-0.6 2,-0.1 1,-0.1 0, 0.0 -0.871 18.2 91.7-170.8 134.6 9.5 6.8 26.3 4 92 A G - 0 0 84 -2,-0.3 2,-0.3 2,-0.0 -1,-0.1 -0.150 34.9-160.9 139.8 124.2 6.9 9.3 25.2 5 93 A S - 0 0 99 -2,-0.1 2,-0.6 3,-0.0 3,-0.2 -0.950 9.6-149.2-129.3 148.7 6.3 11.6 22.2 6 94 A S S S- 0 0 128 -2,-0.3 -2,-0.0 1,-0.3 0, 0.0 -0.875 77.8 -9.2-120.9 98.8 4.2 14.7 21.6 7 95 A G S S- 0 0 63 -2,-0.6 -1,-0.3 2,-0.1 3,-0.2 0.924 77.9-132.5 80.8 88.3 2.8 15.0 18.1 8 96 A V - 0 0 100 1,-0.2 -3,-0.0 -3,-0.2 0, 0.0 -0.172 55.1 -51.6 -65.9 163.1 4.3 12.5 15.7 9 97 A K S S+ 0 0 203 1,-0.1 2,-0.5 2,-0.0 -1,-0.2 -0.084 73.4 172.1 -38.6 101.0 5.6 13.5 12.3 10 98 A R + 0 0 219 -3,-0.2 2,-0.4 2,-0.0 -1,-0.1 -0.945 3.9 158.6-125.8 111.4 2.6 15.5 11.0 11 99 A A - 0 0 86 -2,-0.5 2,-0.1 2,-0.0 -2,-0.0 -0.986 43.3-104.4-133.9 143.0 2.8 17.5 7.8 12 100 A V + 0 0 152 -2,-0.4 2,-0.3 0, 0.0 -2,-0.0 -0.395 54.1 147.1 -65.3 135.9 0.2 18.8 5.4 13 101 A Q - 0 0 145 -2,-0.1 2,-0.2 3,-0.0 3,-0.1 -0.983 37.7-121.4-164.6 160.6 -0.0 16.8 2.1 14 102 A K - 0 0 169 -2,-0.3 0, 0.0 1,-0.3 0, 0.0 -0.508 60.4 -43.7-103.5 173.9 -2.4 15.6 -0.5 15 103 A T + 0 0 34 -2,-0.2 2,-0.3 50,-0.1 -1,-0.3 0.080 67.5 176.1 -34.1 142.0 -3.4 12.1 -1.8 16 104 A S - 0 0 22 -3,-0.1 48,-0.2 51,-0.1 2,-0.1 -0.988 37.7 -80.0-153.5 157.1 -0.4 9.9 -2.2 17 105 A D - 0 0 58 -2,-0.3 2,-0.4 46,-0.1 46,-0.2 -0.374 45.6-148.9 -61.5 129.7 0.5 6.3 -3.1 18 106 A L E -A 62 0A 0 44,-3.3 44,-2.3 71,-0.1 2,-0.4 -0.863 3.8-138.1-106.4 136.5 0.1 4.0 -0.2 19 107 A I E -AB 61 88A 3 69,-2.8 69,-2.9 -2,-0.4 2,-0.5 -0.773 13.0-151.2 -95.2 133.9 2.2 0.9 0.4 20 108 A V E -AB 60 87A 1 40,-2.0 40,-1.2 -2,-0.4 2,-0.4 -0.889 9.4-165.0-107.7 131.9 0.6 -2.4 1.6 21 109 A L E +AB 59 86A 48 65,-2.4 65,-2.1 -2,-0.5 38,-0.2 -0.900 65.1 34.5-116.5 144.2 2.4 -5.0 3.6 22 110 A G S S+ 0 0 19 36,-1.0 -1,-0.2 -2,-0.4 37,-0.2 0.839 74.7 161.2 86.1 36.4 1.5 -8.6 4.3 23 111 A L - 0 0 15 35,-3.2 -1,-0.2 -3,-0.3 61,-0.1 -0.705 36.7-117.6 -93.7 142.2 -0.1 -9.3 1.0 24 112 A P - 0 0 18 0, 0.0 34,-0.2 0, 0.0 -1,-0.1 -0.146 14.8-124.4 -69.8 168.5 -0.7 -12.9 -0.3 25 113 A W S S+ 0 0 194 1,-0.1 31,-0.1 32,-0.1 32,-0.1 0.899 106.9 58.8 -81.4 -45.0 0.9 -14.4 -3.4 26 114 A K S S+ 0 0 109 55,-0.1 2,-0.3 2,-0.0 -1,-0.1 0.875 90.9 85.0 -51.6 -40.7 -2.4 -15.4 -5.1 27 115 A T + 0 0 5 53,-0.1 2,-0.2 4,-0.1 -4,-0.0 -0.499 64.5 178.8 -68.9 124.0 -3.5 -11.8 -5.0 28 116 A T > - 0 0 41 -2,-0.3 4,-3.0 1,-0.0 5,-0.2 -0.523 46.3 -86.6-116.0-175.7 -2.1 -9.9 -8.0 29 117 A E H > S+ 0 0 82 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.900 128.5 48.6 -59.4 -42.6 -2.4 -6.3 -9.3 30 118 A Q H > S+ 0 0 159 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.899 114.3 45.4 -65.0 -41.7 -5.6 -7.2 -11.2 31 119 A D H > S+ 0 0 63 1,-0.2 4,-2.5 2,-0.2 -2,-0.2 0.892 109.2 55.5 -68.8 -40.9 -7.1 -8.8 -8.1 32 120 A L H X S+ 0 0 3 -4,-3.0 4,-3.2 1,-0.2 5,-0.4 0.874 103.1 56.5 -59.7 -38.5 -6.0 -5.9 -5.8 33 121 A K H X S+ 0 0 81 -4,-1.7 4,-1.4 1,-0.2 9,-0.3 0.896 110.5 43.6 -60.7 -41.6 -7.9 -3.5 -8.1 34 122 A E H < S+ 0 0 140 -4,-1.2 4,-0.4 2,-0.2 -2,-0.2 0.904 117.4 45.6 -70.8 -42.8 -11.1 -5.4 -7.7 35 123 A Y H >< S+ 0 0 61 -4,-2.5 3,-2.0 1,-0.2 4,-0.3 0.971 115.7 44.0 -64.7 -56.1 -10.6 -5.8 -3.9 36 124 A F H >X S+ 0 0 2 -4,-3.2 3,-1.9 1,-0.3 4,-0.6 0.825 102.0 69.9 -58.8 -32.0 -9.6 -2.2 -3.2 37 125 A S G >< S+ 0 0 41 -4,-1.4 3,-0.5 -5,-0.4 -1,-0.3 0.717 82.9 74.5 -59.1 -19.9 -12.4 -1.1 -5.5 38 126 A T G <4 S+ 0 0 94 -3,-2.0 -1,-0.3 -4,-0.4 -2,-0.2 0.836 92.1 52.6 -62.5 -33.2 -14.7 -2.3 -2.7 39 127 A F G <4 S- 0 0 64 -3,-1.9 -1,-0.2 -4,-0.3 -2,-0.2 0.741 136.7 -73.2 -74.5 -23.6 -13.8 0.7 -0.7 40 128 A G S << S- 0 0 40 -4,-0.6 2,-0.3 -3,-0.5 -3,-0.1 -0.462 91.4 -13.1 170.3 -90.3 -14.7 3.0 -3.6 41 129 A E - 0 0 95 -5,-0.1 24,-1.4 -2,-0.1 2,-0.4 -0.920 55.3-132.2-150.0 119.2 -12.6 3.4 -6.7 42 130 A V E +C 64 0A 10 -2,-0.3 22,-0.2 -9,-0.3 3,-0.1 -0.556 22.7 176.6 -73.2 125.0 -9.0 2.2 -7.3 43 131 A L E S+ 0 0 89 20,-3.0 2,-0.3 -2,-0.4 21,-0.2 0.760 70.7 14.0 -97.0 -32.8 -6.9 4.9 -8.8 44 132 A M E -C 63 0A 79 19,-2.2 19,-2.2 2,-0.0 2,-0.4 -0.990 63.0-179.8-148.2 136.0 -3.6 3.1 -8.8 45 133 A V E +C 62 0A 48 -2,-0.3 2,-0.3 17,-0.2 17,-0.2 -0.999 10.7 154.6-139.9 136.0 -2.6 -0.6 -8.4 46 134 A Q E -C 61 0A 86 15,-1.7 15,-1.1 -2,-0.4 2,-0.4 -0.982 22.8-154.3-159.0 147.1 0.7 -2.4 -8.4 47 135 A V E -C 60 0A 12 -2,-0.3 2,-0.3 13,-0.2 13,-0.2 -0.972 15.6-141.2-131.0 119.1 2.3 -5.5 -7.0 48 136 A K E - 0 0 83 11,-1.6 9,-2.2 -2,-0.4 10,-0.6 -0.561 22.3-172.8 -78.6 138.0 6.1 -5.9 -6.3 49 137 A K E -C 56 0A 110 7,-0.3 7,-0.2 -2,-0.3 6,-0.1 -0.965 20.7-117.5-133.0 149.4 7.7 -9.2 -7.1 50 138 A D - 0 0 63 5,-1.6 7,-0.0 -2,-0.3 6,-0.0 -0.343 6.6-153.4 -80.1 163.9 11.1 -10.7 -6.5 51 139 A L S S+ 0 0 177 2,-0.1 -1,-0.1 3,-0.1 -2,-0.0 0.433 89.1 62.5-114.9 -6.4 13.5 -11.9 -9.3 52 140 A K S S+ 0 0 195 3,-0.1 -1,-0.0 1,-0.0 -2,-0.0 0.834 128.3 6.3 -87.1 -37.4 15.3 -14.5 -7.3 53 141 A T S S- 0 0 96 2,-0.2 -2,-0.1 0, 0.0 3,-0.1 0.598 91.1-129.1-117.4 -24.5 12.4 -16.7 -6.6 54 142 A G + 0 0 48 1,-0.3 2,-0.3 0, 0.0 -3,-0.1 0.336 65.7 129.4 89.3 -7.6 9.7 -15.1 -8.7 55 143 A H S S- 0 0 132 1,-0.1 -5,-1.6 -6,-0.1 -1,-0.3 -0.619 70.8 -91.4 -84.1 139.6 7.3 -15.0 -5.7 56 144 A S E - C 0 49A 26 -2,-0.3 -7,-0.3 -7,-0.2 -1,-0.1 -0.052 28.0-127.1 -46.0 146.4 5.6 -11.7 -4.8 57 145 A K E - 0 0 90 -9,-2.2 -8,-0.2 2,-0.3 -1,-0.2 0.629 43.2-114.4 -73.2 -13.1 7.5 -9.6 -2.3 58 146 A G E S+ 0 0 17 -10,-0.6 -35,-3.2 1,-0.3 -36,-1.0 0.535 87.9 75.1 90.7 7.4 4.3 -9.5 -0.2 59 147 A F E +A 21 0A 42 -11,-0.4 -11,-1.6 -38,-0.2 -2,-0.3 -0.979 49.6 158.8-148.1 157.9 3.9 -5.8 -0.7 60 148 A G E -AC 20 47A 1 -40,-1.2 -40,-2.0 -2,-0.3 2,-0.4 -0.877 35.6 -88.2-159.6-169.3 2.8 -3.3 -3.3 61 149 A F E +AC 19 46A 28 -15,-1.1 -15,-1.7 -2,-0.3 2,-0.3 -0.934 36.8 168.7-121.0 142.8 1.6 0.2 -4.1 62 150 A V E -AC 18 45A 1 -44,-2.3 -44,-3.3 -2,-0.4 2,-0.3 -0.996 11.8-167.8-151.1 150.1 -2.0 1.5 -4.3 63 151 A R E - C 0 44A 63 -19,-2.2 -20,-3.0 -2,-0.3 -19,-2.2 -0.997 11.2-145.7-143.8 136.0 -3.9 4.8 -4.6 64 152 A F E - C 0 42A 1 -2,-0.3 -22,-0.2 -48,-0.2 -27,-0.0 -0.470 21.5-123.8 -95.1 168.8 -7.5 5.7 -4.2 65 153 A T S S+ 0 0 61 -24,-1.4 2,-0.4 -2,-0.1 -1,-0.1 0.839 97.2 52.3 -79.8 -35.6 -9.6 8.4 -6.0 66 154 A E S >> S- 0 0 91 -25,-0.2 4,-1.9 1,-0.1 3,-0.5 -0.881 72.9-144.2-107.5 133.6 -10.7 10.1 -2.8 67 155 A Y H 3> S+ 0 0 122 -2,-0.4 4,-2.5 1,-0.2 5,-0.2 0.845 103.6 58.0 -60.3 -34.5 -8.2 11.2 -0.1 68 156 A E H 3> S+ 0 0 135 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.846 105.7 50.0 -64.8 -34.3 -10.8 10.3 2.6 69 157 A T H <> S+ 0 0 19 -3,-0.5 4,-1.5 2,-0.2 -2,-0.2 0.936 113.2 43.6 -70.1 -48.0 -10.9 6.8 1.3 70 158 A Q H X S+ 0 0 4 -4,-1.9 4,-1.7 2,-0.2 -2,-0.2 0.881 115.7 49.8 -65.0 -39.2 -7.1 6.3 1.3 71 159 A V H X S+ 0 0 52 -4,-2.5 4,-1.2 1,-0.2 -2,-0.2 0.933 110.9 47.6 -65.5 -47.5 -6.8 7.9 4.7 72 160 A K H X S+ 0 0 126 -4,-2.2 4,-1.6 1,-0.2 -1,-0.2 0.785 108.3 58.6 -64.6 -27.2 -9.6 5.8 6.2 73 161 A V H < S+ 0 0 4 -4,-1.5 14,-0.3 1,-0.2 -1,-0.2 0.923 104.5 47.4 -68.4 -45.7 -7.9 2.7 4.7 74 162 A M H < S+ 0 0 54 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.757 106.5 62.5 -67.1 -24.4 -4.6 3.3 6.5 75 163 A S H < S+ 0 0 78 -4,-1.2 2,-0.2 -5,-0.1 -1,-0.2 0.965 110.9 31.2 -65.6 -54.1 -6.6 3.9 9.7 76 164 A Q S < S- 0 0 96 -4,-1.6 11,-0.3 1,-0.1 2,-0.1 -0.688 84.5-118.5-105.7 159.8 -8.1 0.4 9.9 77 165 A R - 0 0 180 -2,-0.2 2,-0.3 9,-0.1 9,-0.2 -0.238 21.1-145.4 -86.9 179.2 -6.7 -3.0 8.7 78 166 A H E -D 85 0B 20 7,-1.6 7,-1.7 -2,-0.1 2,-0.8 -0.987 8.7-136.7-151.2 138.5 -8.1 -5.3 6.0 79 167 A M E -D 84 0B 87 -2,-0.3 2,-0.6 5,-0.2 3,-0.2 -0.849 21.5-169.8-100.3 108.2 -8.1 -9.1 5.6 80 168 A I E > S-D 83 0B 1 3,-1.9 3,-2.4 -2,-0.8 -53,-0.1 -0.870 73.9 -21.4-101.9 117.2 -7.3 -10.1 2.0 81 169 A D T 3 S- 0 0 82 -2,-0.6 -1,-0.2 1,-0.3 3,-0.1 0.811 126.8 -55.0 57.0 30.5 -7.9 -13.8 1.1 82 170 A G T 3 S+ 0 0 62 1,-0.3 2,-0.3 -3,-0.2 -1,-0.3 0.478 115.6 121.8 82.5 1.7 -7.7 -14.5 4.9 83 171 A R E < -D 80 0B 125 -3,-2.4 -3,-1.9 1,-0.0 2,-0.5 -0.720 67.9-113.4 -99.7 149.3 -4.3 -12.8 5.0 84 172 A W E +D 79 0B 146 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.695 39.8 175.5 -84.2 124.0 -3.4 -9.8 7.2 85 173 A C E -D 78 0B 4 -7,-1.7 -7,-1.6 -2,-0.5 2,-0.4 -0.982 11.4-167.1-131.8 142.1 -2.6 -6.7 5.2 86 174 A D E -B 21 0A 63 -65,-2.1 -65,-2.4 -2,-0.4 2,-0.5 -0.976 13.0-141.5-130.4 142.9 -1.8 -3.1 6.4 87 175 A C E +B 20 0A 6 -2,-0.4 2,-0.3 -14,-0.3 -67,-0.2 -0.900 30.4 159.9-107.3 125.0 -1.7 0.2 4.5 88 176 A K E -B 19 0A 102 -69,-2.9 -69,-2.8 -2,-0.5 -13,-0.0 -0.948 40.3 -99.5-140.0 159.7 1.0 2.7 5.3 89 177 A L - 0 0 87 -2,-0.3 2,-0.3 -71,-0.2 -71,-0.1 -0.551 43.6-104.5 -81.6 143.4 2.7 5.7 3.7 90 178 A P - 0 0 49 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.498 41.2-166.1 -69.7 125.9 6.1 5.3 2.0 91 179 A N > - 0 0 120 -2,-0.3 3,-0.7 1,-0.0 -3,-0.0 -0.523 39.7 -90.9-106.5 175.6 9.0 6.7 4.1 92 180 A S T 3 S+ 0 0 109 1,-0.2 -1,-0.0 -2,-0.2 3,-0.0 0.875 118.4 71.8 -52.4 -40.5 12.6 7.5 3.3 93 181 A K T 3 S+ 0 0 186 1,-0.2 2,-0.7 2,-0.0 -1,-0.2 0.907 103.0 40.4 -40.6 -58.3 13.5 4.0 4.4 94 182 A Q < + 0 0 91 -3,-0.7 2,-0.5 2,-0.0 -1,-0.2 -0.857 68.9 167.9-101.5 109.1 11.9 2.5 1.3 95 183 A S - 0 0 90 -2,-0.7 -3,-0.1 -3,-0.0 -2,-0.0 -0.763 24.7-148.6-123.2 85.0 12.7 4.6 -1.8 96 184 A Q - 0 0 125 -2,-0.5 2,-0.1 1,-0.1 -2,-0.0 -0.262 20.2-127.4 -53.6 129.5 11.7 2.7 -5.0 97 185 A D + 0 0 124 2,-0.1 2,-0.3 4,-0.0 4,-0.1 -0.357 32.5 174.2 -78.1 160.6 13.9 3.6 -7.9 98 186 A S - 0 0 87 2,-0.4 -1,-0.0 -2,-0.1 0, 0.0 -0.966 49.8 -13.9-158.2 169.4 12.6 4.8 -11.3 99 187 A G S S+ 0 0 66 -2,-0.3 2,-0.9 1,-0.1 -2,-0.1 0.011 122.7 51.9 33.9 -96.3 13.7 6.1 -14.6 100 188 A P S S+ 0 0 127 0, 0.0 2,-0.5 0, 0.0 -2,-0.4 -0.532 73.5 168.3 -69.7 102.1 17.3 7.1 -13.7 101 189 A S - 0 0 75 -2,-0.9 2,-0.8 2,-0.1 -2,-0.1 -0.960 35.5-130.6-123.3 116.5 18.7 4.0 -12.1 102 190 A S 0 0 137 -2,-0.5 0, 0.0 0, 0.0 0, 0.0 -0.490 360.0 360.0 -66.3 103.7 22.5 3.7 -11.5 103 191 A G 0 0 117 -2,-0.8 -2,-0.1 0, 0.0 0, 0.0 -0.455 360.0 360.0 151.3 360.0 23.4 0.4 -13.0