==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ENDOCYTOSIS/EXOCYTOSIS 22-MAY-05 2CSQ . COMPND 2 MOLECULE: RIM BINDING PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.INOUE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7889.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 48.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 22.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 135 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-123.9 2.9 -6.9 -16.5 2 2 A S + 0 0 119 2,-0.1 6,-0.1 5,-0.0 0, 0.0 0.806 360.0 91.2-105.3 -49.9 -0.7 -5.7 -16.7 3 3 A S + 0 0 92 1,-0.1 2,-0.3 4,-0.1 3,-0.1 0.120 50.4 104.6 -42.3 163.5 -2.1 -6.7 -13.3 4 4 A G S S- 0 0 40 1,-0.1 -1,-0.1 4,-0.0 3,-0.1 -0.889 81.2 -10.5 162.4-128.1 -2.0 -4.2 -10.5 5 5 A S S S- 0 0 80 -2,-0.3 2,-0.3 1,-0.2 -1,-0.1 0.982 122.9 -6.0 -69.8 -59.9 -4.5 -1.9 -8.8 6 6 A S S S+ 0 0 106 -3,-0.1 -1,-0.2 1,-0.1 3,-0.1 -0.804 92.5 78.2-131.6 172.9 -7.4 -2.2 -11.2 7 7 A G S S+ 0 0 63 -2,-0.3 2,-1.5 -3,-0.1 -4,-0.1 -0.384 71.3 87.1 125.5 -55.9 -8.2 -3.9 -14.6 8 8 A T S S- 0 0 112 -6,-0.1 3,-0.2 -4,-0.1 -4,-0.0 -0.620 80.7-133.9 -82.4 87.7 -8.7 -7.6 -13.7 9 9 A D - 0 0 138 -2,-1.5 2,-0.6 1,-0.2 -1,-0.0 0.085 32.9 -87.8 -37.5 149.5 -12.4 -7.6 -12.9 10 10 A P + 0 0 129 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 -0.533 58.1 158.2 -69.7 113.0 -13.3 -9.5 -9.7 11 11 A G + 0 0 81 -2,-0.6 2,-0.2 1,-0.2 -2,-0.1 0.857 60.6 12.8-101.0 -52.7 -13.9 -13.1 -10.5 12 12 A A S S- 0 0 90 1,-0.1 -1,-0.2 0, 0.0 2,-0.1 -0.657 84.3 -89.3-119.9 176.8 -13.3 -15.1 -7.3 13 13 A E - 0 0 187 -2,-0.2 2,-0.3 -3,-0.1 -1,-0.1 -0.469 41.7-178.4 -85.8 159.0 -13.0 -14.3 -3.6 14 14 A E - 0 0 143 -2,-0.1 3,-0.1 1,-0.1 -1,-0.0 -0.913 37.3 -57.7-148.2 173.2 -9.8 -13.5 -1.8 15 15 A L - 0 0 142 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 -0.150 66.1 -93.8 -54.7 148.3 -8.3 -12.8 1.6 16 16 A P - 0 0 119 0, 0.0 2,-0.6 0, 0.0 38,-0.3 -0.501 39.9-168.8 -69.7 125.6 -9.7 -9.7 3.4 17 17 A A - 0 0 24 -2,-0.3 36,-0.2 36,-0.1 35,-0.2 -0.893 20.7-131.3-121.9 101.5 -7.7 -6.5 2.8 18 18 A R E -A 52 0A 85 -2,-0.6 34,-2.2 34,-0.5 2,-0.5 -0.236 22.9-135.4 -50.9 125.7 -8.5 -3.5 5.0 19 19 A I E -A 51 0A 68 32,-0.2 62,-1.3 62,-0.1 2,-0.4 -0.771 24.7-176.3 -91.6 124.7 -9.0 -0.5 2.7 20 20 A F E -AB 50 80A 8 30,-1.0 30,-1.5 -2,-0.5 2,-0.4 -0.976 12.6-148.7-124.8 132.5 -7.3 2.7 4.0 21 21 A V E -AB 49 79A 39 58,-1.4 58,-1.5 -2,-0.4 2,-0.3 -0.783 22.4-115.7-100.8 142.1 -7.6 6.1 2.4 22 22 A A - 0 0 3 26,-1.6 25,-2.4 -2,-0.4 56,-0.2 -0.563 19.3-167.8 -76.9 133.8 -4.8 8.7 2.5 23 23 A L S S+ 0 0 58 -2,-0.3 2,-0.3 1,-0.3 -1,-0.1 0.762 73.2 7.8 -90.1 -29.7 -5.6 11.9 4.4 24 24 A F S S- 0 0 122 20,-0.1 -1,-0.3 21,-0.1 20,-0.1 -0.986 91.4 -80.3-150.6 156.8 -2.6 13.9 3.2 25 25 A D - 0 0 96 -2,-0.3 2,-0.5 20,-0.1 20,-0.2 -0.304 43.3-155.3 -59.1 136.7 0.3 13.5 0.7 26 26 A Y B -F 44 0B 14 18,-1.8 18,-0.9 5,-0.0 3,-0.1 -0.971 14.9-179.4-122.4 124.0 3.2 11.4 2.0 27 27 A D >>> + 0 0 82 -2,-0.5 4,-3.2 16,-0.1 3,-0.8 -0.848 8.3 177.9-125.5 95.4 6.8 11.7 0.8 28 28 A P T 345S+ 0 0 4 0, 0.0 6,-0.2 0, 0.0 -1,-0.1 0.594 82.0 64.8 -69.7 -10.4 9.2 9.2 2.5 29 29 A L T 345S+ 0 0 145 2,-0.1 9,-0.1 9,-0.1 10,-0.0 0.806 122.1 14.2 -82.0 -32.0 11.9 10.6 0.2 30 30 A T T <45S+ 0 0 111 -3,-0.8 -1,-0.0 4,-0.1 0, 0.0 0.766 130.1 48.8-108.9 -44.9 11.8 14.1 1.8 31 31 A M T <5S+ 0 0 103 -4,-3.2 -2,-0.1 2,-0.0 -5,-0.0 0.985 94.2 81.2 -60.7 -61.7 9.8 13.6 5.0 32 32 A S S - 0 0 84 -6,-0.2 4,-0.6 1,-0.1 -2,-0.1 -0.991 63.7-146.6-151.1 140.0 16.7 8.9 5.9 35 35 A P H >> S+ 0 0 89 0, 0.0 4,-1.4 0, 0.0 3,-0.5 0.934 98.5 58.0 -69.8 -48.6 16.2 7.5 2.4 36 36 A D H >4 S+ 0 0 129 1,-0.3 3,-0.9 2,-0.2 4,-0.4 0.928 113.8 38.4 -47.3 -55.0 17.6 4.0 3.1 37 37 A A H >4 S+ 0 0 59 1,-0.2 3,-0.7 2,-0.2 4,-0.4 0.675 106.1 70.8 -71.5 -17.0 15.1 3.5 5.9 38 38 A A H X< S+ 0 0 3 -4,-0.6 3,-1.8 -3,-0.5 -1,-0.2 0.807 80.9 72.8 -68.9 -30.1 12.5 5.3 3.7 39 39 A E T << S+ 0 0 143 -4,-1.4 -1,-0.2 -3,-0.9 -2,-0.2 0.854 91.5 57.4 -52.4 -37.3 12.4 2.3 1.4 40 40 A E T < S+ 0 0 133 -3,-0.7 32,-1.9 -4,-0.4 -1,-0.3 0.752 97.1 81.8 -66.3 -23.8 10.5 0.4 4.1 41 41 A E B < S-c 72 0A 37 -3,-1.8 32,-0.2 -4,-0.4 29,-0.1 -0.453 76.5-135.9 -82.3 156.1 7.9 3.1 4.0 42 42 A L - 0 0 1 30,-3.2 29,-0.1 29,-0.1 -3,-0.1 -0.934 16.0-144.8-119.4 111.2 5.1 3.3 1.3 43 43 A P + 0 0 45 0, 0.0 2,-0.3 0, 0.0 -16,-0.1 -0.288 25.9 163.7 -69.7 155.3 4.4 6.7 -0.3 44 44 A F B -F 26 0B 7 -18,-0.9 -18,-1.8 -20,-0.1 2,-0.1 -0.888 30.0-124.5-173.2 140.6 0.9 7.7 -1.3 45 45 A K > - 0 0 112 -2,-0.3 3,-1.9 -20,-0.2 -23,-0.3 -0.456 48.3 -77.2 -87.8 162.6 -1.1 10.8 -2.2 46 46 A E T 3 S+ 0 0 102 1,-0.3 -23,-0.2 -2,-0.1 -1,-0.1 -0.338 120.0 22.1 -60.2 133.1 -4.2 12.1 -0.5 47 47 A G T 3 S+ 0 0 41 -25,-2.4 2,-0.3 1,-0.3 -1,-0.3 0.468 92.9 135.9 88.1 1.7 -7.3 10.1 -1.5 48 48 A Q < - 0 0 36 -3,-1.9 -26,-1.6 1,-0.0 -1,-0.3 -0.638 51.6-129.1 -86.4 140.6 -5.2 7.2 -2.6 49 49 A I E -A 21 0A 77 -2,-0.3 2,-0.4 -28,-0.2 18,-0.2 -0.668 17.9-165.0 -90.4 143.0 -6.3 3.6 -1.6 50 50 A I E -A 20 0A 0 -30,-1.5 2,-1.7 -2,-0.3 -30,-1.0 -0.918 19.8-136.6-132.8 107.6 -3.9 1.2 0.1 51 51 A K E -AD 19 65A 63 14,-2.3 14,-2.2 -2,-0.4 2,-0.2 -0.405 29.2-155.9 -62.8 87.3 -4.7 -2.5 0.3 52 52 A V E -AD 18 64A 0 -34,-2.2 2,-0.5 -2,-1.7 -34,-0.5 -0.483 7.3-162.4 -70.3 132.5 -3.7 -3.0 3.9 53 53 A Y E - 0 0 87 10,-3.0 10,-0.2 -2,-0.2 2,-0.1 -0.905 53.7 -27.9-122.2 103.6 -2.7 -6.6 4.7 54 54 A G E S- 0 0 51 -2,-0.5 2,-0.1 -38,-0.3 -36,-0.1 -0.465 90.9 -48.7 92.9-167.2 -2.7 -7.5 8.4 55 55 A D E - 0 0 108 -2,-0.1 8,-0.6 7,-0.1 2,-0.3 -0.333 59.6 -91.1 -97.8-177.9 -2.0 -5.4 11.4 56 56 A K E - D 0 62A 74 6,-0.2 6,-0.2 -2,-0.1 -1,-0.1 -0.744 37.0-121.1 -98.5 144.8 0.7 -2.8 12.2 57 57 A D > - 0 0 90 4,-1.0 3,-1.6 -2,-0.3 4,-0.2 0.003 48.5 -74.0 -70.4-177.6 3.9 -3.7 14.0 58 58 A A T 3 S+ 0 0 107 1,-0.3 -2,-0.1 2,-0.1 -1,-0.0 0.913 133.1 59.4 -43.7 -55.2 5.1 -2.2 17.2 59 59 A D T 3 S- 0 0 137 1,-0.1 -1,-0.3 2,-0.1 -3,-0.0 0.833 116.3-118.1 -44.8 -37.1 6.0 1.1 15.5 60 60 A G < + 0 0 15 -3,-1.6 15,-1.0 1,-0.3 2,-0.4 0.782 61.4 146.3 99.4 34.9 2.4 1.2 14.5 61 61 A F E - E 0 74A 52 13,-0.2 -4,-1.0 -4,-0.2 2,-0.6 -0.894 44.0-134.7-108.8 132.7 2.7 1.1 10.7 62 62 A Y E -DE 56 73A 26 11,-3.0 11,-1.8 -2,-0.4 2,-1.0 -0.751 15.2-140.2 -88.5 118.1 0.1 -0.6 8.5 63 63 A R E + E 0 72A 134 -2,-0.6 -10,-3.0 -8,-0.6 2,-0.3 -0.660 41.5 152.7 -80.4 102.6 1.7 -2.8 5.8 64 64 A G E -DE 52 71A 0 -2,-1.0 7,-1.4 7,-0.9 2,-0.5 -0.805 41.4-122.0-127.8 169.8 -0.4 -2.3 2.7 65 65 A E E +DE 51 70A 75 -14,-2.2 -14,-2.3 -2,-0.3 2,-0.4 -0.957 31.8 167.9-118.1 124.6 -0.1 -2.5 -1.1 66 66 A T E > + E 0 69A 8 3,-1.5 3,-1.0 -2,-0.5 -16,-0.1 -0.998 64.4 0.7-137.6 138.7 -0.8 0.5 -3.3 67 67 A C T 3 S- 0 0 87 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.908 130.3 -56.3 53.4 45.8 -0.1 1.2 -7.0 68 68 A A T 3 S+ 0 0 67 1,-0.2 2,-0.3 -3,-0.1 -1,-0.3 0.801 117.0 120.2 57.6 29.3 1.5 -2.2 -7.3 69 69 A R E < - E 0 66A 142 -3,-1.0 -3,-1.5 -26,-0.1 2,-0.4 -0.896 51.3-150.4-124.9 154.4 3.9 -1.2 -4.5 70 70 A L E + E 0 65A 114 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.984 38.1 104.3-127.9 134.5 4.5 -2.7 -1.0 71 71 A G E - E 0 64A 9 -7,-1.4 -7,-0.9 -2,-0.4 2,-0.4 -0.948 63.9 -54.4-176.3-165.5 5.7 -0.8 2.1 72 72 A L E -cE 41 63A 31 -32,-1.9 -30,-3.2 -2,-0.3 -9,-0.2 -0.812 40.0-154.7-100.8 137.1 4.7 0.6 5.5 73 73 A I E - E 0 62A 0 -11,-1.8 -11,-3.0 -2,-0.4 2,-0.8 -0.940 19.6-123.6-115.3 127.1 1.9 3.1 5.9 74 74 A P E >> - E 0 61A 12 0, 0.0 4,-1.3 0, 0.0 3,-1.2 -0.536 12.0-152.5 -69.7 104.8 1.7 5.6 8.8 75 75 A C T 34 S+ 0 0 42 -15,-1.0 -14,-0.1 -2,-0.8 5,-0.1 0.716 95.3 64.8 -49.5 -20.1 -1.6 4.9 10.6 76 76 A N T 34 S+ 0 0 152 -16,-0.2 -1,-0.3 1,-0.1 -15,-0.0 0.931 108.7 34.2 -70.5 -47.3 -1.3 8.6 11.5 77 77 A M T <4 S+ 0 0 31 -3,-1.2 -54,-0.3 -54,-0.1 -2,-0.2 0.995 117.5 50.0 -70.7 -69.1 -1.5 9.9 8.0 78 78 A V S < S- 0 0 2 -4,-1.3 2,-0.3 -56,-0.2 -56,-0.2 0.034 73.5-158.6 -62.2 177.2 -3.9 7.4 6.4 79 79 A S E -B 21 0A 51 -58,-1.5 -58,-1.4 0, 0.0 2,-0.4 -0.969 23.1 -90.0-155.1 166.3 -7.3 6.4 8.0 80 80 A E E -B 20 0A 141 -2,-0.3 2,-0.2 -60,-0.2 -60,-0.2 -0.668 39.3-134.7 -86.0 135.0 -9.9 3.7 8.0 81 81 A I - 0 0 66 -62,-1.3 -62,-0.1 -2,-0.4 3,-0.1 -0.551 27.1 -97.4 -87.8 153.4 -12.8 4.0 5.5 82 82 A Q - 0 0 166 -2,-0.2 2,-0.1 1,-0.1 -1,-0.1 -0.252 48.9 -89.3 -66.0 155.2 -16.4 3.4 6.5 83 83 A A - 0 0 51 1,-0.1 -1,-0.1 3,-0.0 4,-0.0 -0.437 28.3-157.6 -68.4 136.2 -18.1 0.0 5.8 84 84 A D + 0 0 160 -2,-0.1 3,-0.2 -3,-0.1 -1,-0.1 0.881 67.6 86.7 -80.8 -41.7 -19.7 -0.3 2.4 85 85 A D S S- 0 0 100 1,-0.2 -2,-0.0 0, 0.0 0, 0.0 0.109 104.8 -48.1 -50.5 172.6 -22.0 -3.1 3.3 86 86 A E - 0 0 145 1,-0.1 -1,-0.2 3,-0.0 2,-0.1 -0.156 67.4-125.3 -47.9 133.6 -25.5 -2.3 4.8 87 87 A E - 0 0 99 1,-0.2 -1,-0.1 -3,-0.2 3,-0.1 -0.355 35.4 -77.9 -80.9 163.6 -25.1 0.2 7.6 88 88 A M - 0 0 125 1,-0.1 2,-0.8 -2,-0.1 -1,-0.2 0.131 55.8 -90.8 -50.0 174.5 -26.4 -0.3 11.1 89 89 A M - 0 0 163 -3,-0.1 3,-0.4 3,-0.0 2,-0.3 -0.832 48.4-176.8 -99.1 105.3 -30.1 0.2 11.9 90 90 A D + 0 0 111 -2,-0.8 3,-0.2 1,-0.2 -3,-0.0 -0.797 64.5 10.2-103.5 144.0 -30.9 3.7 12.9 91 91 A Q S S- 0 0 185 -2,-0.3 -1,-0.2 1,-0.2 0, 0.0 0.928 86.2-143.6 57.8 48.0 -34.3 5.0 14.0 92 92 A S - 0 0 95 -3,-0.4 -1,-0.2 1,-0.1 -3,-0.0 -0.160 31.8 -91.3 -45.2 121.1 -35.7 1.5 14.2 93 93 A G - 0 0 46 1,-0.2 -1,-0.1 -3,-0.2 -2,-0.0 0.119 29.2-120.7 -34.6 147.2 -39.3 1.7 13.0 94 94 A P S S+ 0 0 142 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.636 73.4 126.6 -69.8 -14.0 -41.9 2.3 15.8 95 95 A S - 0 0 102 1,-0.1 2,-0.3 0, 0.0 0, 0.0 0.041 68.3-104.0 -42.7 153.9 -43.6 -0.9 14.8 96 96 A S 0 0 123 1,-0.1 -1,-0.1 0, 0.0 -3,-0.0 -0.664 360.0 360.0 -88.5 140.2 -44.1 -3.4 17.7 97 97 A G 0 0 122 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 -0.024 360.0 360.0 -78.8 360.0 -41.8 -6.5 18.0