==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 21-OCT-99 1D8B . COMPND 2 MOLECULE: SGS1 RECQ HELICASE; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR Z.LIU,M.J.MACIAS,M.J.BOTTOMLEY,G.STIER,J.P.LINGE,M.NILGES, . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5533.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 74.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 49.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 11 A E 0 0 240 0, 0.0 2,-2.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 21.8 17.8 -1.6 -2.9 2 12 A L - 0 0 140 79,-0.1 2,-0.7 4,-0.0 5,-0.0 -0.424 360.0-165.8 -82.1 61.2 15.7 -2.3 0.1 3 13 A N >> - 0 0 98 -2,-2.2 4,-1.4 1,-0.2 3,-0.8 -0.361 14.4-170.1 -56.5 101.5 12.7 -0.7 -1.6 4 14 A N H 3> S+ 0 0 17 -2,-0.7 4,-2.4 1,-0.3 -1,-0.2 0.812 86.0 65.4 -63.8 -29.0 10.3 -0.3 1.3 5 15 A L H 3> S+ 0 0 72 1,-0.2 4,-2.9 2,-0.2 -1,-0.3 0.863 99.5 51.1 -61.5 -35.2 7.7 0.6 -1.4 6 16 A R H <> S+ 0 0 164 -3,-0.8 4,-2.3 2,-0.2 -1,-0.2 0.901 109.5 49.2 -68.9 -39.3 8.0 -3.0 -2.6 7 17 A M H X S+ 0 0 63 -4,-1.4 4,-2.8 2,-0.2 -2,-0.2 0.862 111.7 51.2 -66.5 -34.1 7.4 -4.2 0.9 8 18 A T H X S+ 0 0 2 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.959 110.3 46.3 -66.1 -52.7 4.4 -1.9 1.0 9 19 A Y H X S+ 0 0 53 -4,-2.9 4,-1.7 1,-0.2 -2,-0.2 0.871 117.3 45.4 -57.5 -39.9 3.0 -3.1 -2.3 10 20 A E H X S+ 0 0 73 -4,-2.3 4,-2.6 2,-0.2 5,-0.2 0.906 110.3 52.3 -71.8 -43.0 3.5 -6.7 -1.1 11 21 A R H X S+ 0 0 76 -4,-2.8 4,-2.0 1,-0.2 -2,-0.2 0.854 110.9 49.8 -61.7 -33.2 2.1 -6.0 2.4 12 22 A L H X S+ 0 0 0 -4,-2.3 4,-3.1 2,-0.2 -1,-0.2 0.896 108.8 51.0 -71.4 -41.1 -0.9 -4.6 0.7 13 23 A R H X S+ 0 0 104 -4,-1.7 4,-1.5 1,-0.2 -2,-0.2 0.905 114.2 44.2 -62.9 -41.4 -1.3 -7.7 -1.5 14 24 A E H X S+ 0 0 99 -4,-2.6 4,-1.5 2,-0.2 -1,-0.2 0.856 116.1 47.1 -70.7 -36.7 -1.1 -9.9 1.5 15 25 A L H X>S+ 0 0 34 -4,-2.0 4,-2.9 -5,-0.2 5,-0.5 0.876 108.3 54.8 -73.8 -38.4 -3.4 -7.8 3.5 16 26 A S H X5S+ 0 0 8 -4,-3.1 4,-1.2 1,-0.2 14,-0.2 0.885 113.6 41.8 -62.4 -39.1 -6.0 -7.5 0.7 17 27 A L H X5S+ 0 0 121 -4,-1.5 4,-1.1 -5,-0.2 -1,-0.2 0.807 116.3 51.2 -77.9 -29.4 -6.1 -11.3 0.4 18 28 A N H X5S+ 0 0 67 -4,-1.5 4,-0.8 2,-0.2 3,-0.5 0.986 119.1 32.0 -70.1 -61.0 -6.2 -11.6 4.2 19 29 A L H <5S+ 0 0 45 -4,-2.9 4,-0.5 1,-0.2 3,-0.2 0.816 114.6 63.6 -66.4 -31.8 -9.0 -9.2 5.0 20 30 A G H < - 0 0 10 0, 0.0 4,-2.7 0, 0.0 5,-0.2 -0.231 26.9-116.3 -59.9 147.4 -7.4 -3.1 -7.1 33 43 A D H > S+ 0 0 56 1,-0.2 4,-1.6 2,-0.2 5,-0.1 0.848 116.1 53.1 -51.3 -40.0 -3.8 -3.6 -8.3 34 44 A S H > S+ 0 0 68 2,-0.2 4,-2.1 1,-0.2 5,-0.2 0.932 110.2 45.3 -64.1 -47.6 -3.7 -0.0 -9.5 35 45 A I H > S+ 0 0 6 1,-0.2 4,-2.7 2,-0.2 5,-0.3 0.890 109.6 55.9 -64.7 -38.3 -4.8 1.4 -6.1 36 46 A L H X S+ 0 0 3 -4,-2.7 4,-1.2 1,-0.2 -1,-0.2 0.861 109.4 48.9 -60.8 -35.8 -2.3 -0.9 -4.3 37 47 A K H X S+ 0 0 110 -4,-1.6 4,-1.3 -5,-0.2 -2,-0.2 0.960 115.7 38.3 -69.5 -55.5 0.4 0.6 -6.5 38 48 A K H X S+ 0 0 64 -4,-2.1 4,-3.1 1,-0.2 5,-0.5 0.895 117.2 51.0 -65.4 -41.2 -0.3 4.3 -6.0 39 49 A M H X S+ 0 0 0 -4,-2.7 4,-1.6 -5,-0.2 -1,-0.2 0.831 108.8 52.8 -66.9 -30.3 -1.2 4.0 -2.4 40 50 A A H < S+ 0 0 0 -4,-1.2 -1,-0.2 -5,-0.3 -2,-0.2 0.801 116.6 38.3 -73.8 -30.0 2.0 2.1 -1.7 41 51 A A H < S+ 0 0 43 -4,-1.3 -2,-0.2 -3,-0.2 -3,-0.2 0.867 126.0 34.2 -87.9 -42.7 4.1 4.9 -3.3 42 52 A I H < S- 0 0 66 -4,-3.1 -3,-0.2 -5,-0.2 -2,-0.2 0.849 86.7-160.7 -80.8 -34.4 2.2 7.9 -2.1 43 53 A L < - 0 0 9 -4,-1.6 2,-0.5 -5,-0.5 -3,-0.1 0.967 8.7-156.9 49.8 68.3 1.3 6.3 1.3 44 54 A P - 0 0 2 0, 0.0 -1,-0.2 0, 0.0 28,-0.1 -0.645 17.6-175.7 -79.4 119.0 -1.6 8.6 2.2 45 55 A M + 0 0 89 -2,-0.5 2,-0.3 26,-0.1 27,-0.1 0.279 68.2 41.9 -96.3 8.5 -2.2 8.6 6.0 46 56 A N S >> S- 0 0 96 1,-0.1 4,-1.8 26,-0.0 3,-0.5 -0.989 78.4-120.5-152.2 157.6 -5.2 10.8 5.7 47 57 A D H 3> S+ 0 0 106 -2,-0.3 4,-0.7 1,-0.2 -1,-0.1 0.863 115.6 57.8 -66.5 -35.6 -8.4 11.3 3.6 48 58 A S H 34 S+ 0 0 88 1,-0.2 -1,-0.2 2,-0.2 3,-0.1 0.754 111.7 42.9 -65.8 -23.1 -7.2 14.8 2.8 49 59 A A H X4 S+ 0 0 37 -3,-0.5 3,-2.7 1,-0.2 -2,-0.2 0.762 95.5 77.3 -90.9 -30.6 -4.1 13.2 1.4 50 60 A F H >< S+ 0 0 7 -4,-1.8 3,-2.2 1,-0.3 -2,-0.2 0.731 77.2 77.3 -51.0 -26.5 -5.9 10.4 -0.4 51 61 A A G >< S+ 0 0 80 -4,-0.7 3,-1.0 1,-0.3 -1,-0.3 0.708 81.7 66.9 -59.6 -21.0 -6.9 12.9 -3.1 52 62 A T G < S+ 0 0 93 -3,-2.7 -1,-0.3 1,-0.2 -2,-0.2 0.504 77.4 83.5 -80.0 -2.0 -3.3 12.6 -4.5 53 63 A L G < S- 0 0 3 -3,-2.2 2,-1.7 1,-0.2 -1,-0.2 0.524 95.7-135.9 -76.8 -3.4 -4.1 9.0 -5.5 54 64 A G S < S+ 0 0 57 -3,-1.0 2,-0.3 -4,-0.1 -1,-0.2 -0.497 75.6 12.0 85.2 -71.0 -5.7 10.5 -8.6 55 65 A T + 0 0 117 -2,-1.7 2,-0.5 -3,-0.1 -4,-0.1 -0.734 63.6 164.7-147.8 98.8 -8.9 8.5 -8.7 56 66 A V - 0 0 15 -2,-0.3 5,-0.1 -6,-0.1 -2,-0.1 -0.954 38.0-121.3-116.5 121.7 -10.2 6.3 -6.0 57 67 A E > - 0 0 104 -2,-0.5 4,-2.1 1,-0.1 3,-0.5 -0.169 20.9-118.4 -55.1 151.3 -13.8 5.2 -6.2 58 68 A D H > S+ 0 0 99 1,-0.3 4,-1.2 2,-0.2 -1,-0.1 0.865 120.3 53.3 -60.8 -33.1 -16.1 6.2 -3.3 59 69 A K H > S+ 0 0 104 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.798 107.6 51.3 -70.5 -27.3 -16.6 2.5 -2.7 60 70 A Y H > S+ 0 0 59 -3,-0.5 4,-0.6 1,-0.2 -2,-0.2 0.841 104.3 57.3 -76.1 -34.6 -12.8 2.2 -2.6 61 71 A R H < S+ 0 0 109 -4,-2.1 4,-0.4 2,-0.2 -2,-0.2 0.807 103.3 56.4 -64.6 -32.9 -12.6 4.9 -0.1 62 72 A R H >< S+ 0 0 163 -4,-1.2 3,-1.9 1,-0.2 -2,-0.2 0.995 110.2 37.9 -63.7 -67.8 -14.9 3.0 2.3 63 73 A R H >< S+ 0 0 38 -4,-1.2 3,-1.8 1,-0.3 -1,-0.2 0.583 96.7 88.4 -64.4 -5.5 -13.0 -0.3 2.6 64 74 A F G >X S+ 0 0 1 -4,-0.6 3,-2.5 1,-0.3 4,-0.8 0.835 72.3 71.5 -58.1 -35.1 -9.9 1.9 2.6 65 75 A K G <4 S+ 0 0 132 -3,-1.9 4,-0.3 -4,-0.4 -1,-0.3 0.698 88.8 61.2 -55.3 -23.8 -10.4 2.1 6.4 66 76 A Y G <4 S+ 0 0 113 -3,-1.8 -1,-0.3 1,-0.2 -2,-0.2 0.518 105.6 46.8 -83.6 -5.7 -9.3 -1.5 6.7 67 77 A F T X> S+ 0 0 0 -3,-2.5 4,-3.1 -4,-0.2 3,-1.2 0.552 84.2 91.8-107.7 -15.5 -5.9 -0.6 5.3 68 78 A K H 3X S+ 0 0 84 -4,-0.8 4,-2.2 1,-0.3 5,-0.2 0.805 82.4 57.4 -51.3 -36.5 -5.2 2.5 7.4 69 79 A A H 3> S+ 0 0 82 -4,-0.3 4,-0.7 2,-0.2 -1,-0.3 0.836 115.7 35.9 -66.8 -32.4 -3.4 0.4 10.0 70 80 A T H <> S+ 0 0 28 -3,-1.2 4,-2.6 2,-0.2 5,-0.3 0.883 116.3 51.7 -86.7 -43.3 -0.9 -0.8 7.4 71 81 A I H X S+ 0 0 1 -4,-3.1 4,-2.4 1,-0.2 5,-0.2 0.906 109.6 51.4 -59.8 -42.6 -0.6 2.4 5.3 72 82 A A H X S+ 0 0 23 -4,-2.2 4,-1.2 -5,-0.3 -1,-0.2 0.873 111.6 47.6 -62.1 -38.9 0.1 4.4 8.4 73 83 A D H X S+ 0 0 92 -4,-0.7 4,-2.4 -5,-0.2 -2,-0.2 0.924 114.8 43.6 -69.1 -47.0 2.9 2.0 9.4 74 84 A L H X S+ 0 0 16 -4,-2.6 4,-0.9 1,-0.2 -2,-0.2 0.834 112.0 54.1 -69.9 -30.4 4.5 1.9 6.0 75 85 A S H < S+ 0 0 15 -4,-2.4 4,-0.3 -5,-0.3 -1,-0.2 0.824 112.9 44.2 -71.5 -29.7 4.2 5.7 5.6 76 86 A K H >< S+ 0 0 142 -4,-1.2 3,-0.9 -5,-0.2 -2,-0.2 0.861 113.8 48.8 -79.5 -39.1 6.0 6.0 8.9 77 87 A K H >X S+ 0 0 82 -4,-2.4 4,-3.0 1,-0.2 3,-1.9 0.614 90.7 83.5 -75.7 -13.8 8.6 3.4 8.0 78 88 A R T 3< S+ 0 0 122 -4,-0.9 -1,-0.2 1,-0.3 -2,-0.2 0.817 95.1 43.4 -59.2 -31.7 9.2 5.2 4.7 79 89 A S T <4 S+ 0 0 105 -3,-0.9 -1,-0.3 -4,-0.3 -2,-0.2 0.258 117.2 48.4 -97.4 10.7 11.5 7.6 6.4 80 90 A S T <4 0 0 83 -3,-1.9 -2,-0.2 0, 0.0 -3,-0.1 0.718 360.0 360.0-114.9 -43.6 13.2 4.8 8.4 81 91 A E < 0 0 122 -4,-3.0 -3,-0.2 0, 0.0 -77,-0.1 0.645 360.0 360.0-123.9 360.0 14.0 2.1 5.8