==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 08-DEC-05 2D8U . COMPND 2 MOLECULE: UBIQUITIN LIGASE TRIM63; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.MIYAMOTO,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA, . 64 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5241.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 20 31.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 4.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 135 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -67.6 20.0 -12.3 -18.9 2 2 A S + 0 0 130 1,-0.1 2,-0.1 0, 0.0 0, 0.0 0.582 360.0 55.1-131.0 -48.2 16.4 -12.7 -17.6 3 3 A S + 0 0 112 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.342 60.4 145.1 -87.7 171.8 16.6 -14.1 -14.0 4 4 A G - 0 0 66 -2,-0.1 2,-0.2 -3,-0.1 0, 0.0 -0.937 48.1 -67.9 170.6 169.0 18.4 -12.7 -11.1 5 5 A S - 0 0 136 -2,-0.3 2,-0.3 0, 0.0 0, 0.0 -0.544 45.4-179.8 -80.1 142.5 18.5 -12.1 -7.3 6 6 A S - 0 0 119 -2,-0.2 2,-0.1 0, 0.0 -2,-0.0 -0.988 9.9-156.4-146.6 133.1 16.0 -9.7 -5.8 7 7 A G - 0 0 62 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.254 36.7 -73.7 -97.0-173.0 15.4 -8.5 -2.2 8 8 A H - 0 0 176 -2,-0.1 2,-0.3 1,-0.1 -1,-0.1 -0.593 51.0-104.1 -85.6 144.6 12.4 -7.1 -0.4 9 9 A P - 0 0 77 0, 0.0 2,-0.4 0, 0.0 10,-0.3 -0.486 34.4-150.3 -69.8 128.6 11.2 -3.5 -1.0 10 10 A M - 0 0 79 -2,-0.3 8,-0.1 8,-0.1 5,-0.1 -0.816 29.6 -91.4-103.7 141.3 12.2 -1.1 1.8 11 11 A C - 0 0 4 6,-0.9 6,-0.1 -2,-0.4 19,-0.1 -0.162 28.7-140.5 -48.4 133.9 10.1 2.0 2.8 12 12 A K S S+ 0 0 146 1,-0.2 3,-0.2 -3,-0.0 -1,-0.1 0.928 100.7 47.6 -64.4 -46.7 11.4 5.1 0.9 13 13 A E S S+ 0 0 137 1,-0.2 2,-1.0 2,-0.1 -1,-0.2 0.968 116.3 43.3 -59.1 -56.7 11.0 7.4 3.8 14 14 A H > - 0 0 62 1,-0.2 3,-0.5 3,-0.1 -1,-0.2 -0.770 68.5-171.2 -96.5 94.5 12.7 5.0 6.3 15 15 A E T 3 S+ 0 0 131 -2,-1.0 2,-0.7 1,-0.3 -1,-0.2 0.878 87.1 42.0 -49.5 -42.3 15.8 3.7 4.5 16 16 A D T 3 S+ 0 0 109 -3,-0.1 -1,-0.3 -6,-0.1 2,-0.3 -0.720 88.7 108.5-110.7 80.6 16.3 1.3 7.4 17 17 A E < - 0 0 50 -2,-0.7 -6,-0.9 -3,-0.5 2,-0.3 -0.819 64.2-127.7-158.2 112.4 12.8 -0.0 8.3 18 18 A K - 0 0 143 -2,-0.3 -8,-0.1 -8,-0.1 -2,-0.1 -0.441 39.4-109.8 -63.2 118.6 11.4 -3.5 7.6 19 19 A I + 0 0 32 -10,-0.3 12,-0.1 -2,-0.3 -1,-0.1 -0.213 39.6 176.1 -51.1 131.7 8.1 -3.1 5.8 20 20 A N + 0 0 104 1,-0.2 2,-0.2 10,-0.1 28,-0.2 0.789 62.1 20.7-106.1 -46.3 5.2 -4.1 8.0 21 21 A I S S- 0 0 25 9,-0.6 2,-0.4 26,-0.1 -1,-0.2 -0.688 70.4-126.8-119.8 173.8 2.1 -3.3 5.9 22 22 A Y E -A 46 0A 69 24,-1.3 24,-2.1 -2,-0.2 2,-0.2 -0.987 17.4-135.8-128.3 129.6 1.4 -2.9 2.1 23 23 A C E -A 45 0A 0 5,-1.9 22,-0.2 -2,-0.4 8,-0.0 -0.486 15.4-174.7 -80.9 151.2 -0.3 0.1 0.5 24 24 A L S S+ 0 0 54 20,-1.2 -1,-0.1 3,-0.2 21,-0.1 0.796 73.5 60.1-108.3 -61.0 -3.0 -0.4 -2.2 25 25 A T S S+ 0 0 79 19,-0.3 20,-0.0 1,-0.3 18,-0.0 0.876 125.7 21.5 -33.1 -70.0 -4.0 3.0 -3.5 26 26 A C S S- 0 0 49 2,-0.1 -1,-0.3 1,-0.0 -2,-0.1 0.715 107.6-129.4 -75.3 -21.2 -0.5 3.8 -4.8 27 27 A E + 0 0 143 1,-0.2 -3,-0.2 -5,-0.0 -2,-0.1 0.960 59.8 133.6 70.8 53.5 0.3 0.1 -4.8 28 28 A V - 0 0 29 2,-0.0 -5,-1.9 -19,-0.0 2,-1.6 -0.989 61.7-121.7-140.3 129.1 3.6 0.3 -2.8 29 29 A P + 0 0 36 0, 0.0 2,-0.2 0, 0.0 -7,-0.2 -0.493 51.8 159.3 -69.7 88.5 4.8 -1.8 0.2 30 30 A T - 0 0 2 -2,-1.6 -9,-0.6 1,-0.2 -10,-0.1 -0.711 40.4-100.0-111.3 163.3 5.3 0.9 2.8 31 31 A C - 0 0 0 -2,-0.2 4,-0.2 -11,-0.2 -1,-0.2 0.035 28.9-115.6 -68.6-176.6 5.4 0.8 6.6 32 32 A S S >>>S+ 0 0 34 2,-0.2 4,-2.9 1,-0.1 3,-1.0 0.778 107.8 67.7 -92.9 -32.9 2.6 1.7 8.9 33 33 A M H 3>5S+ 0 0 62 1,-0.3 4,-1.8 2,-0.2 -1,-0.1 0.811 101.5 50.8 -56.8 -30.5 4.2 4.7 10.5 34 34 A C H 345S+ 0 0 6 2,-0.2 6,-1.6 1,-0.2 -1,-0.3 0.708 112.4 46.5 -80.0 -21.4 3.9 6.4 7.2 35 35 A K H <45S+ 0 0 37 -3,-1.0 -2,-0.2 -4,-0.2 -1,-0.2 0.829 127.4 25.7 -87.7 -37.2 0.2 5.5 6.9 36 36 A V H <5S+ 0 0 55 -4,-2.9 -3,-0.2 1,-0.1 -2,-0.2 0.724 140.5 26.4 -96.6 -28.2 -0.7 6.6 10.5 37 37 A F S < S+ 0 0 129 -2,-0.2 2,-2.8 1,-0.2 3,-0.7 0.625 100.9 92.7 -95.2 -17.4 1.1 11.2 4.1 40 40 A H T 3 + 0 0 34 -6,-1.6 -1,-0.2 1,-0.2 5,-0.1 -0.300 53.7 109.7 -74.7 58.2 -0.3 7.8 3.3 41 41 A K T 3 S+ 0 0 105 -2,-2.8 -1,-0.2 3,-0.1 4,-0.1 0.835 73.8 45.6 -98.7 -46.6 -3.5 8.6 5.0 42 42 A A S < S+ 0 0 45 -3,-0.7 -2,-0.1 22,-0.2 20,-0.1 0.735 101.8 88.3 -69.5 -22.4 -5.9 8.8 2.0 43 43 A C S S- 0 0 20 -4,-0.2 2,-0.4 1,-0.1 -20,-0.0 0.051 82.4-117.2 -65.6-178.0 -4.4 5.6 0.7 44 44 A E - 0 0 60 2,-0.0 -20,-1.2 11,-0.0 -19,-0.3 -0.882 28.0-169.7-131.9 101.6 -5.7 2.1 1.7 45 45 A V E -A 23 0A 14 -2,-0.4 11,-0.4 -22,-0.2 -22,-0.2 -0.612 5.4-163.2 -90.2 149.6 -3.3 -0.2 3.6 46 46 A A E -A 22 0A 8 -24,-2.1 2,-1.5 -2,-0.2 -24,-1.3 -0.839 36.9 -81.4-128.7 166.0 -4.0 -3.9 4.2 47 47 A P >> - 0 0 52 0, 0.0 3,-2.1 0, 0.0 4,-1.2 -0.498 34.7-157.1 -69.8 89.8 -2.7 -6.6 6.4 48 48 A L T 34 S+ 0 0 76 -2,-1.5 -27,-0.1 1,-0.3 -25,-0.0 0.779 83.8 83.1 -36.6 -32.9 0.4 -7.7 4.6 49 49 A Q T 34 S- 0 0 192 -29,-0.2 -1,-0.3 1,-0.1 -28,-0.0 0.894 126.7 -23.1 -38.8 -57.5 -0.1 -11.0 6.5 50 50 A S T <4 S- 0 0 99 -3,-2.1 -2,-0.2 2,-0.1 -1,-0.1 0.640 71.5-156.3-124.9 -47.7 -2.6 -12.1 3.9 51 51 A V < - 0 0 50 -4,-1.2 2,-0.1 1,-0.1 3,-0.1 0.966 25.2-175.9 62.9 54.9 -4.0 -9.1 2.1 52 52 A F - 0 0 161 1,-0.2 -1,-0.1 -5,-0.1 -2,-0.1 -0.402 37.2 -70.1 -81.0 159.5 -7.3 -10.7 1.0 53 53 A Q S S+ 0 0 171 -2,-0.1 -1,-0.2 2,-0.0 -2,-0.0 -0.011 99.4 55.3 -44.8 150.7 -9.9 -9.0 -1.1 54 54 A G S S- 0 0 60 -3,-0.1 2,-0.2 -8,-0.0 -2,-0.0 0.388 87.7 -91.3 92.7 132.3 -11.8 -6.2 0.6 55 55 A Q - 0 0 133 1,-0.1 -9,-0.1 -9,-0.1 -2,-0.0 -0.474 27.7-169.4 -76.4 145.8 -10.5 -3.1 2.3 56 56 A K + 0 0 154 -11,-0.4 2,-0.6 -2,-0.2 -1,-0.1 -0.223 45.6 117.9-128.5 42.6 -9.7 -3.2 6.1 57 57 A T + 0 0 30 1,-0.1 3,-0.1 -11,-0.0 -2,-0.1 -0.910 17.1 128.6-116.7 106.0 -9.2 0.5 6.9 58 58 A E + 0 0 191 -2,-0.6 2,-0.4 1,-0.1 -1,-0.1 0.692 53.3 76.1-119.1 -47.6 -11.6 2.0 9.3 59 59 A S S S+ 0 0 110 2,-0.0 -1,-0.1 0, 0.0 0, 0.0 -0.564 85.0 45.3 -74.2 125.4 -9.5 3.7 12.0 60 60 A G S S- 0 0 51 -2,-0.4 2,-0.0 -3,-0.1 -24,-0.0 0.433 81.2-110.0 108.4 114.2 -8.0 7.0 10.8 61 61 A P - 0 0 119 0, 0.0 2,-0.5 0, 0.0 -2,-0.0 -0.295 30.1-118.6 -69.7 154.7 -9.7 9.8 8.8 62 62 A S - 0 0 98 -20,-0.1 2,-0.2 -2,-0.0 -20,-0.1 -0.842 25.5-154.4-100.6 128.2 -8.8 10.5 5.2 63 63 A S 0 0 88 -2,-0.5 -21,-0.1 1,-0.2 -22,-0.1 -0.601 360.0 360.0 -97.9 159.9 -7.3 13.9 4.3 64 64 A G 0 0 119 -2,-0.2 -1,-0.2 -22,-0.0 -22,-0.2 0.061 360.0 360.0 -34.1 360.0 -7.5 15.7 0.9