==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 09-DEC-05 2D99 . COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN- . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.DOI-KATAYAMA,H.HIROTA,N.TOCHIO,S.KOSHIBA,T.KIGAWA, . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6420.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 48.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 5.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 31.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 134 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-138.3 9.3 -21.9 2.2 2 2 A S - 0 0 126 3,-0.0 2,-0.2 0, 0.0 3,-0.1 -0.893 360.0-178.4-131.7 161.3 10.9 -18.5 2.0 3 3 A S - 0 0 102 1,-0.7 0, 0.0 -2,-0.3 0, 0.0 -0.751 55.1 -40.1-164.9 110.7 9.8 -14.9 1.3 4 4 A G - 0 0 39 -2,-0.2 -1,-0.7 1,-0.1 3,-0.0 0.214 50.1-140.2 55.5 174.0 11.9 -11.8 1.2 5 5 A S - 0 0 114 -3,-0.1 -1,-0.1 0, 0.0 5,-0.0 -0.347 64.1 -37.3-172.0 78.7 14.6 -11.1 3.7 6 6 A S S S+ 0 0 130 1,-0.2 2,-0.3 4,-0.1 3,-0.1 0.897 78.1 154.3 62.5 103.9 15.0 -7.5 5.0 7 7 A G > - 0 0 24 1,-0.1 4,-2.0 -3,-0.0 5,-0.2 -0.900 47.7-137.6-163.8 131.1 14.3 -5.0 2.3 8 8 A L H > S+ 0 0 59 -2,-0.3 4,-1.0 2,-0.2 3,-0.3 0.946 114.9 33.5 -51.6 -55.3 13.1 -1.4 2.2 9 9 A R H > S+ 0 0 112 1,-0.2 4,-2.7 2,-0.2 3,-0.4 0.864 116.6 56.0 -69.1 -37.8 10.9 -2.2 -0.8 10 10 A K H 4 S+ 0 0 74 1,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.712 104.8 56.0 -66.3 -20.1 10.2 -5.7 0.5 11 11 A M H X S+ 0 0 88 -4,-2.0 4,-0.8 -3,-0.3 -1,-0.2 0.805 115.5 34.3 -80.3 -32.7 9.0 -4.0 3.7 12 12 A V H X S+ 0 0 0 -4,-1.0 4,-1.7 -3,-0.4 5,-0.4 0.659 101.2 78.7 -93.3 -21.4 6.5 -1.9 1.8 13 13 A E H < S+ 0 0 57 -4,-2.7 4,-0.4 1,-0.2 19,-0.2 0.794 105.8 34.7 -56.1 -29.4 5.8 -4.6 -0.6 14 14 A E H > S+ 0 0 109 -4,-0.5 4,-4.6 2,-0.1 -1,-0.2 0.802 110.4 64.4 -93.0 -37.2 3.6 -6.2 2.1 15 15 A V H X S+ 0 0 23 -4,-0.8 4,-2.9 2,-0.2 5,-0.4 0.968 105.9 41.4 -48.3 -73.1 2.4 -2.9 3.6 16 16 A F H X S+ 0 0 0 -4,-1.7 4,-2.7 1,-0.3 -1,-0.2 0.839 118.2 50.6 -43.8 -40.6 0.4 -1.8 0.6 17 17 A D H > S+ 0 0 32 -5,-0.4 4,-3.4 -4,-0.4 13,-0.4 0.954 113.5 43.4 -63.9 -52.2 -0.7 -5.4 0.2 18 18 A V H X S+ 0 0 50 -4,-4.6 4,-3.4 2,-0.2 5,-0.2 0.979 115.4 47.2 -56.2 -62.5 -1.8 -5.6 3.9 19 19 A L H X S+ 0 0 43 -4,-2.9 4,-2.7 1,-0.2 5,-0.3 0.909 114.7 48.6 -44.4 -52.6 -3.5 -2.2 3.9 20 20 A Y H X S+ 0 0 35 -4,-2.7 4,-2.3 -5,-0.4 -1,-0.2 0.936 113.1 45.6 -54.0 -52.7 -5.2 -3.1 0.6 21 21 A S H X>S+ 0 0 2 -4,-3.4 5,-2.1 9,-0.3 4,-1.5 0.839 111.2 55.7 -60.2 -34.3 -6.3 -6.5 2.0 22 22 A E H <5S+ 0 0 78 -4,-3.4 64,-0.3 2,-0.2 -1,-0.2 0.922 111.3 41.3 -63.9 -46.3 -7.4 -4.7 5.1 23 23 A A H <5S+ 0 0 17 -4,-2.7 63,-0.5 1,-0.2 -2,-0.2 0.788 115.2 52.6 -71.2 -28.5 -9.6 -2.3 3.2 24 24 A L H <5S- 0 0 61 -4,-2.3 -1,-0.2 -5,-0.3 -2,-0.2 0.731 104.9-136.1 -77.3 -24.0 -10.7 -5.3 1.1 25 25 A G T <5 + 0 0 57 -4,-1.5 -3,-0.2 -5,-0.2 2,-0.1 0.904 48.1 154.8 68.1 43.8 -11.5 -7.2 4.3 26 26 A R < - 0 0 162 -5,-2.1 -1,-0.2 2,-0.1 3,-0.0 -0.450 49.4-134.7 -97.0 172.3 -9.9 -10.4 3.0 27 27 A A S S+ 0 0 106 -2,-0.1 2,-0.2 2,-0.0 -1,-0.1 0.864 88.6 48.8 -91.9 -46.9 -8.5 -13.3 5.0 28 28 A S S S- 0 0 90 1,-0.0 2,-0.8 -7,-0.0 -2,-0.1 -0.611 95.2-103.1 -95.0 156.1 -5.3 -13.7 3.0 29 29 A V - 0 0 89 -2,-0.2 -11,-0.1 -3,-0.0 -12,-0.1 -0.703 42.1-163.5 -82.1 109.7 -2.9 -11.0 2.1 30 30 A V - 0 0 46 -2,-0.8 -9,-0.3 -13,-0.4 -10,-0.1 -0.596 19.0-107.9 -93.2 156.0 -3.5 -10.2 -1.6 31 31 A P - 0 0 93 0, 0.0 -1,-0.1 0, 0.0 -17,-0.1 -0.167 27.3-113.3 -75.0 172.7 -1.0 -8.3 -3.9 32 32 A L - 0 0 11 -19,-0.2 2,-2.2 -12,-0.0 3,-0.2 -0.905 17.9-153.4-115.1 102.5 -1.6 -4.8 -5.1 33 33 A P >> + 0 0 40 0, 0.0 4,-2.6 0, 0.0 3,-1.6 -0.494 23.2 170.4 -75.0 77.2 -2.0 -4.7 -8.9 34 34 A Y H 3> S+ 0 0 8 -2,-2.2 4,-4.5 1,-0.3 5,-0.5 0.933 71.3 66.7 -52.2 -53.3 -0.8 -1.2 -9.4 35 35 A E H 3> S+ 0 0 125 -3,-0.2 4,-0.5 1,-0.2 -1,-0.3 0.767 117.0 30.2 -39.2 -30.6 -0.7 -1.5 -13.1 36 36 A R H X> S+ 0 0 150 -3,-1.6 4,-1.9 2,-0.2 3,-0.9 0.903 118.7 48.4 -93.6 -67.9 -4.5 -1.7 -12.6 37 37 A L H 3< S+ 0 0 6 -4,-2.6 7,-0.3 1,-0.3 6,-0.2 0.809 112.5 56.6 -42.7 -33.9 -5.3 0.4 -9.6 38 38 A L H 3< S+ 0 0 73 -4,-4.5 -1,-0.3 -5,-0.3 -2,-0.2 0.940 102.2 52.7 -64.6 -49.1 -3.1 2.9 -11.3 39 39 A R H << S+ 0 0 205 -3,-0.9 -2,-0.2 -4,-0.5 -1,-0.2 0.920 120.0 34.8 -51.7 -50.0 -5.2 2.9 -14.4 40 40 A E X + 0 0 72 -4,-1.9 4,-0.7 1,-0.1 -1,-0.3 -0.902 62.5 174.1-114.3 103.2 -8.3 3.6 -12.3 41 41 A P T 4 S+ 0 0 88 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 0.771 81.8 61.3 -75.0 -27.7 -7.7 5.8 -9.3 42 42 A G T 4 S+ 0 0 61 1,-0.2 3,-0.3 2,-0.1 -5,-0.1 0.776 95.2 62.4 -68.3 -27.5 -11.4 5.9 -8.5 43 43 A L T 4 S- 0 0 56 1,-0.3 38,-1.9 -3,-0.2 2,-0.3 0.901 128.4 -2.0 -64.0 -42.2 -11.3 2.2 -8.0 44 44 A L E < S-A 80 0A 1 -4,-0.7 2,-0.4 -7,-0.3 -1,-0.3 -0.843 70.2-162.2-156.2 112.8 -8.9 2.6 -5.2 45 45 A A E -A 79 0A 45 34,-2.4 34,-1.6 -3,-0.3 2,-0.6 -0.822 14.9-139.1-100.1 135.4 -7.4 5.8 -3.9 46 46 A V E +A 78 0A 15 -2,-0.4 2,-0.3 32,-0.2 3,-0.2 -0.841 28.2 176.0 -97.1 121.2 -4.3 5.8 -1.7 47 47 A Q E +A 77 0A 121 30,-3.5 30,-4.5 -2,-0.6 32,-0.0 -0.758 53.9 41.1-120.2 166.9 -4.4 8.3 1.1 48 48 A G S S+ 0 0 28 28,-0.3 27,-0.2 -2,-0.3 -1,-0.2 0.799 79.0 163.4 66.7 30.0 -2.1 9.1 4.0 49 49 A L - 0 0 34 -3,-0.2 2,-0.8 26,-0.2 -1,-0.2 -0.282 50.9 -83.1 -75.8 165.2 0.9 8.8 1.7 50 50 A P - 0 0 1 0, 0.0 -1,-0.1 0, 0.0 19,-0.1 -0.614 55.1-109.8 -75.0 108.8 4.3 10.1 2.5 51 51 A E S S+ 0 0 165 -2,-0.8 3,-0.1 1,-0.2 21,-0.0 0.069 101.9 36.7 -35.1 143.3 4.3 13.8 1.6 52 52 A G S S+ 0 0 77 1,-0.3 2,-0.3 -3,-0.1 -1,-0.2 0.960 104.7 82.6 71.1 54.6 6.5 14.5 -1.4 53 53 A L - 0 0 48 -4,-0.0 2,-0.3 8,-0.0 -1,-0.3 -0.876 65.7-122.7-162.1-169.5 5.7 11.3 -3.3 54 54 A A - 0 0 45 -2,-0.3 2,-0.5 -3,-0.1 7,-0.0 -0.979 36.2 -94.0-154.9 140.7 3.2 9.6 -5.6 55 55 A F S S+ 0 0 46 -2,-0.3 2,-0.3 -9,-0.1 -9,-0.0 -0.395 73.4 122.0 -58.7 109.2 1.2 6.4 -5.5 56 56 A R - 0 0 92 -2,-0.5 5,-0.1 1,-0.1 -2,-0.1 -0.976 65.5 -51.8-163.6 164.7 3.3 3.9 -7.3 57 57 A R > - 0 0 112 -2,-0.3 4,-1.3 1,-0.1 -1,-0.1 0.106 49.5-119.8 -38.0 155.8 5.0 0.5 -6.9 58 58 A P T 4 S+ 0 0 0 0, 0.0 8,-0.2 0, 0.0 -1,-0.1 0.711 114.0 48.3 -74.9 -21.9 7.2 0.1 -3.9 59 59 A A T 4 S+ 0 0 48 1,-0.1 7,-0.1 -50,-0.1 -50,-0.1 0.930 105.6 54.0 -81.4 -52.2 10.2 -0.6 -6.2 60 60 A E T 4 S+ 0 0 146 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 0.850 95.8 91.5 -49.7 -38.5 9.6 2.4 -8.6 61 61 A Y S < S- 0 0 10 -4,-1.3 -52,-0.1 -5,-0.1 -8,-0.0 0.103 87.2 -97.9 -51.0 171.7 9.7 4.6 -5.5 62 62 A D > - 0 0 77 1,-0.1 4,-1.6 0, 0.0 -1,-0.1 -0.198 28.9-107.2 -86.2-178.3 12.9 6.1 -4.3 63 63 A P H > S+ 0 0 75 0, 0.0 4,-1.5 0, 0.0 5,-0.1 0.961 120.4 39.6 -75.0 -56.3 15.2 4.9 -1.5 64 64 A K H > S+ 0 0 157 1,-0.2 4,-1.5 2,-0.2 5,-0.1 0.734 111.8 64.8 -64.7 -22.3 14.4 7.5 1.1 65 65 A A H >> S+ 0 0 3 2,-0.2 4,-2.2 1,-0.2 3,-1.2 0.987 98.4 48.1 -63.3 -61.8 10.8 7.2 -0.1 66 66 A L H 3X S+ 0 0 13 -4,-1.6 4,-2.9 1,-0.3 5,-0.3 0.879 113.2 50.6 -45.0 -45.0 10.4 3.5 1.0 67 67 A M H 3X S+ 0 0 67 -4,-1.5 4,-0.8 1,-0.3 -1,-0.3 0.819 111.8 46.7 -63.7 -32.3 11.8 4.6 4.3 68 68 A A H X S+ 0 0 56 -4,-2.2 3,-4.2 1,-0.2 4,-1.6 0.547 89.7 99.2 -86.7 -10.0 4.6 7.4 7.3 73 73 A S T 3< + 0 0 40 -4,-1.5 -1,-0.2 1,-0.3 -3,-0.1 0.867 66.5 72.8 -41.6 -46.4 2.8 4.1 6.8 74 74 A H T 34 S+ 0 0 131 -3,-0.5 -1,-0.3 1,-0.3 -2,-0.1 0.762 109.5 34.3 -41.3 -27.8 1.1 4.9 10.1 75 75 A R T <4 S+ 0 0 108 -3,-4.2 -1,-0.3 -27,-0.2 -2,-0.3 0.829 90.7 109.2 -95.5 -43.2 -0.7 7.4 8.0 76 76 A I < + 0 0 6 -4,-1.6 2,-0.4 -7,-0.2 -28,-0.3 -0.069 47.2 173.1 -38.4 123.5 -0.8 5.4 4.7 77 77 A R E -A 47 0A 182 -30,-4.5 -30,-3.5 2,-0.0 2,-0.2 -0.989 24.8-136.7-145.3 132.4 -4.5 4.4 4.3 78 78 A F E -A 46 0A 11 -2,-0.4 2,-0.4 -32,-0.2 -32,-0.2 -0.545 12.4-158.4 -87.3 153.1 -6.3 2.8 1.4 79 79 A K E -A 45 0A 118 -34,-1.6 -34,-2.4 -2,-0.2 2,-0.2 -0.964 4.5-155.7-137.1 116.9 -9.6 3.9 0.1 80 80 A L E -A 44 0A 26 -2,-0.4 -36,-0.2 2,-0.4 -37,-0.1 -0.596 32.3-113.7 -90.3 152.3 -11.9 1.6 -1.9 81 81 A K S S+ 0 0 106 -38,-1.9 -37,-0.1 -2,-0.2 -1,-0.1 0.771 103.5 77.2 -52.9 -26.2 -14.6 2.9 -4.3 82 82 A R S S- 0 0 172 -39,-0.2 -2,-0.4 1,-0.1 2,-0.0 -0.700 87.4-122.0 -91.0 139.8 -17.0 1.4 -1.8 83 83 A P S S+ 0 0 107 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.272 80.5 56.0 -75.0 163.9 -17.7 3.2 1.5 84 84 A S - 0 0 127 1,-0.1 2,-0.4 -4,-0.1 -2,-0.1 0.970 70.0-154.8 76.0 81.5 -17.1 1.6 4.9 85 85 A S - 0 0 66 1,-0.1 -62,-0.1 -7,-0.0 -1,-0.1 -0.723 24.8-106.3 -91.2 136.6 -13.4 0.6 5.0 86 86 A G - 0 0 38 -63,-0.5 -61,-0.1 -2,-0.4 2,-0.1 -0.476 38.2-139.7 -64.6 112.0 -12.4 -2.2 7.4 87 87 A P - 0 0 105 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.451 8.4-130.2 -75.0 146.2 -10.6 -0.5 10.3 88 88 A S - 0 0 111 -2,-0.1 -2,-0.0 1,-0.0 0, 0.0 0.971 65.9 -74.0 -57.4 -59.2 -7.5 -2.2 11.7 89 89 A S 0 0 111 -3,-0.0 -1,-0.0 0, 0.0 0, 0.0 0.120 360.0 360.0-166.6 -58.1 -8.6 -2.0 15.3 90 90 A G 0 0 123 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.892 360.0 360.0 -39.0 360.0 -8.4 1.6 16.7