==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 12-DEC-05 2D9N . COMPND 2 MOLECULE: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6684.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 27 35.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 56 A G 0 0 137 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -62.4 -1.9 18.7 5.9 2 57 A S + 0 0 121 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.808 360.0 171.1 -95.5 124.2 -3.2 15.2 6.5 3 58 A S + 0 0 127 -2,-0.5 -1,-0.1 2,-0.1 0, 0.0 -0.008 41.6 116.6-118.1 26.7 -4.0 13.1 3.5 4 59 A G - 0 0 66 2,-0.0 2,-0.3 3,-0.0 3,-0.1 0.302 52.9-134.2 -74.4-152.6 -4.6 9.9 5.3 5 60 A S - 0 0 89 1,-0.1 -2,-0.1 3,-0.0 -1,-0.0 -0.920 24.6-109.5-170.3 143.0 -7.9 7.9 5.5 6 61 A S S S- 0 0 148 -2,-0.3 -1,-0.1 1,-0.1 -2,-0.0 0.853 80.5 -84.0 -42.2 -42.6 -10.0 6.1 8.0 7 62 A G - 0 0 46 -3,-0.1 -1,-0.1 22,-0.0 -3,-0.0 0.456 45.7-148.4 130.3 84.0 -8.9 2.8 6.4 8 63 A E > - 0 0 131 1,-0.1 3,-0.7 2,-0.0 22,-0.1 0.047 40.8 -91.2 -63.6 179.7 -10.6 1.5 3.3 9 64 A K T 3 S+ 0 0 66 1,-0.2 21,-1.1 20,-0.2 -1,-0.1 0.354 87.4 124.0 -76.9 7.9 -10.9 -2.3 2.5 10 65 A T T 3 + 0 0 60 19,-0.1 2,-0.3 2,-0.1 -1,-0.2 0.799 64.6 66.8 -36.6 -36.8 -7.7 -1.9 0.6 11 66 A V S < S- 0 0 45 -3,-0.7 19,-2.6 27,-0.1 2,-0.4 -0.705 91.0-121.4 -93.1 141.8 -6.5 -4.7 3.0 12 67 A V B -a 30 0A 9 -2,-0.3 19,-0.2 17,-0.2 -2,-0.1 -0.683 36.7-100.9 -84.6 128.3 -7.9 -8.2 2.8 13 68 A C > - 0 0 1 17,-2.4 4,-0.7 -2,-0.4 -1,-0.1 -0.108 23.4-153.5 -45.9 137.3 -9.4 -9.5 6.0 14 69 A K H > S+ 0 0 127 2,-0.1 4,-0.7 1,-0.1 -1,-0.2 0.651 92.0 53.6 -89.2 -18.2 -7.1 -11.8 7.9 15 70 A H H >4>S+ 0 0 96 2,-0.2 5,-2.8 1,-0.1 3,-0.5 0.920 104.6 51.0 -81.1 -48.6 -10.0 -13.6 9.6 16 71 A W H >45S+ 0 0 86 4,-0.3 3,-2.4 3,-0.3 5,-0.2 0.868 100.3 67.0 -56.9 -38.1 -11.9 -14.5 6.5 17 72 A L H 3<5S+ 0 0 71 -4,-0.7 -1,-0.2 1,-0.3 -2,-0.2 0.919 109.7 34.6 -48.7 -51.2 -8.7 -16.0 5.0 18 73 A R T <<5S- 0 0 200 -4,-0.7 -1,-0.3 -3,-0.5 -2,-0.2 0.186 123.8-105.4 -90.4 16.6 -8.7 -18.8 7.6 19 74 A G T < 5S+ 0 0 60 -3,-2.4 -3,-0.3 1,-0.1 -2,-0.1 0.934 84.8 126.5 60.6 48.3 -12.5 -18.9 7.5 20 75 A L < + 0 0 120 -5,-2.8 2,-0.4 -6,-0.0 -4,-0.3 -0.019 46.5 88.9-123.7 27.8 -12.9 -17.1 10.9 21 76 A C - 0 0 33 -6,-0.3 6,-0.0 -5,-0.2 -8,-0.0 -0.988 43.0-177.8-130.8 137.6 -15.2 -14.3 9.8 22 77 A K S S+ 0 0 189 -2,-0.4 -1,-0.1 1,-0.1 0, 0.0 -0.046 70.8 80.6-120.6 29.4 -19.0 -14.2 9.7 23 78 A K > + 0 0 104 1,-0.2 3,-1.5 2,-0.0 2,-0.7 0.819 55.8 168.2-100.5 -45.1 -19.4 -10.7 8.2 24 79 A G T 3 S+ 0 0 32 1,-0.3 3,-0.4 2,-0.2 -1,-0.2 -0.542 78.9 7.3 70.4-111.4 -18.8 -11.3 4.5 25 80 A D T 3 S+ 0 0 134 -2,-0.7 -1,-0.3 1,-0.2 -2,-0.0 0.513 131.0 61.5 -81.1 -5.1 -19.8 -8.1 2.7 26 81 A Q S < S+ 0 0 129 -3,-1.5 -1,-0.2 2,-0.0 -2,-0.2 0.697 80.3 107.4 -91.6 -23.5 -20.3 -6.4 6.0 27 82 A C S S- 0 0 9 -3,-0.4 4,-0.1 1,-0.1 -18,-0.1 0.064 75.4-126.8 -49.0 166.1 -16.7 -6.8 7.1 28 83 A E S S+ 0 0 131 2,-0.1 2,-0.3 -20,-0.1 -1,-0.1 0.359 88.3 56.5 -99.4 2.9 -14.4 -3.7 7.1 29 84 A F S S- 0 0 43 -19,-0.1 -17,-0.2 -20,-0.1 2,-0.2 -0.831 96.0 -83.9-129.9 168.1 -11.8 -5.4 4.9 30 85 A L B -a 12 0A 28 -19,-2.6 -17,-2.4 -21,-1.1 -14,-0.1 -0.504 24.9-161.6 -74.4 138.3 -11.6 -7.1 1.5 31 86 A H + 0 0 36 -19,-0.2 2,-0.4 -2,-0.2 -1,-0.1 0.026 63.3 93.6-106.9 24.8 -12.6 -10.7 1.4 32 87 A E S S- 0 0 100 2,-0.0 2,-0.9 0, 0.0 -2,-0.1 -0.967 78.9-120.5-123.0 134.6 -10.9 -11.3 -2.0 33 88 A Y + 0 0 131 -2,-0.4 2,-0.4 4,-0.1 -2,-0.1 -0.598 44.5 166.2 -74.8 103.9 -7.4 -12.6 -2.5 34 89 A D > - 0 0 46 -2,-0.9 4,-2.2 1,-0.1 -22,-0.1 -0.980 39.3-149.0-125.3 131.0 -5.6 -9.9 -4.5 35 90 A M T 4 S+ 0 0 99 -2,-0.4 -1,-0.1 1,-0.2 -2,-0.0 0.609 105.4 38.3 -69.4 -10.8 -1.9 -9.6 -5.1 36 91 A T T 4 S+ 0 0 95 4,-0.0 -1,-0.2 22,-0.0 22,-0.0 0.815 118.3 42.6-104.2 -50.0 -2.4 -5.8 -5.1 37 92 A K T 4 S+ 0 0 84 -26,-0.1 -2,-0.2 -5,-0.0 -25,-0.2 0.900 100.9 84.2 -65.2 -41.7 -5.1 -5.2 -2.5 38 93 A M S < S- 0 0 12 -4,-2.2 -27,-0.1 -27,-0.2 -25,-0.0 -0.240 88.7-105.2 -62.5 150.4 -3.4 -7.6 -0.1 39 94 A P - 0 0 48 0, 0.0 19,-0.6 0, 0.0 -1,-0.1 -0.088 36.3 -99.8 -69.8 173.3 -0.5 -6.3 2.1 40 95 A E B -b 58 0B 75 17,-0.2 2,-0.7 1,-0.1 19,-0.1 -0.301 53.2 -67.6 -89.3 176.7 3.2 -7.0 1.5 41 96 A C > - 0 0 0 17,-2.5 4,-2.7 1,-0.2 5,-0.3 -0.539 38.6-150.3 -69.6 108.2 5.5 -9.5 3.3 42 97 A Y H > S+ 0 0 138 -2,-0.7 4,-1.3 1,-0.2 5,-0.4 0.819 98.3 49.3 -47.0 -33.8 5.8 -8.3 6.8 43 98 A F H >>S+ 0 0 98 2,-0.2 5,-2.9 3,-0.2 4,-1.7 0.981 115.2 38.2 -71.0 -60.0 9.2 -9.9 6.8 44 99 A Y H 45S+ 0 0 53 4,-0.3 -2,-0.2 3,-0.2 -1,-0.2 0.670 120.1 51.9 -65.7 -15.6 10.5 -8.5 3.5 45 100 A S H <5S+ 0 0 57 -4,-2.7 -1,-0.2 4,-0.1 -2,-0.2 0.735 125.9 21.2 -91.1 -27.3 8.8 -5.3 4.5 46 101 A K H <5S+ 0 0 145 -4,-1.3 -3,-0.2 -3,-0.5 -2,-0.2 0.835 142.3 19.4-103.4 -63.3 10.4 -5.1 7.9 47 102 A F T <5S- 0 0 105 -4,-1.7 -3,-0.2 -5,-0.4 -4,-0.1 0.799 90.8-139.5 -79.7 -30.9 13.6 -7.2 8.0 48 103 A G < + 0 0 20 -5,-2.9 2,-0.3 -7,-0.2 -4,-0.3 0.812 67.5 104.2 75.2 30.4 13.8 -7.2 4.2 49 104 A E + 0 0 158 -6,-0.4 2,-0.4 2,-0.0 -1,-0.1 -0.890 34.8 159.3-148.7 113.2 14.8 -10.9 4.0 50 105 A C - 0 0 28 -2,-0.3 2,-0.7 -6,-0.1 5,-0.1 -0.942 24.0-163.8-139.6 115.2 12.6 -13.8 3.0 51 106 A S + 0 0 130 -2,-0.4 2,-0.5 2,-0.0 -2,-0.0 -0.227 52.1 125.8 -89.7 45.2 13.9 -17.1 1.8 52 107 A N - 0 0 90 -2,-0.7 3,-0.4 1,-0.1 -2,-0.1 -0.918 39.4-175.4-110.2 125.1 10.5 -18.1 0.3 53 108 A K S S+ 0 0 201 -2,-0.5 -1,-0.1 1,-0.2 -2,-0.0 0.745 92.3 33.2 -86.0 -26.5 10.2 -19.1 -3.3 54 109 A E S S+ 0 0 175 2,-0.0 -1,-0.2 0, 0.0 -2,-0.0 -0.254 80.6 160.6-123.4 44.2 6.4 -19.3 -3.2 55 110 A C - 0 0 26 -3,-0.4 4,-0.1 1,-0.2 -14,-0.1 -0.543 35.1-150.0 -72.0 120.3 5.6 -16.6 -0.7 56 111 A P S S+ 0 0 66 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 0.419 75.6 83.5 -69.8 3.6 2.0 -15.5 -1.0 57 112 A F S S- 0 0 85 1,-0.0 2,-0.3 -17,-0.0 -17,-0.2 -0.623 90.9 -94.6-105.9 166.4 3.2 -12.0 0.1 58 113 A L B -b 40 0B 42 -19,-0.6 -17,-2.5 -2,-0.2 2,-0.7 -0.623 29.1-152.0 -82.9 136.6 4.7 -9.1 -1.9 59 114 A H + 0 0 75 -2,-0.3 2,-0.4 -19,-0.1 -14,-0.0 -0.871 20.6 173.4-113.1 99.5 8.5 -8.9 -2.0 60 115 A I - 0 0 68 -2,-0.7 5,-0.0 -19,-0.1 -2,-0.0 -0.900 30.6-121.8-109.7 132.8 9.7 -5.3 -2.4 61 116 A D > - 0 0 70 -2,-0.4 3,-1.9 1,-0.1 -13,-0.0 -0.435 15.5-129.4 -71.4 141.0 13.3 -4.3 -2.2 62 117 A P T 3 S+ 0 0 79 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 0.427 106.2 67.3 -69.7 3.0 14.3 -1.6 0.4 63 118 A E T 3 S+ 0 0 136 1,-0.2 3,-0.2 2,-0.1 8,-0.2 0.449 94.7 54.5-100.9 -4.3 16.0 0.2 -2.4 64 119 A S S < S+ 0 0 58 -3,-1.9 -1,-0.2 1,-0.1 -3,-0.0 0.129 94.2 70.3-113.7 17.1 12.8 1.0 -4.2 65 120 A K S S+ 0 0 115 -3,-0.2 2,-0.4 -5,-0.0 -1,-0.1 -0.075 72.6 110.2-123.4 31.7 11.1 2.7 -1.3 66 121 A I - 0 0 64 -3,-0.2 5,-0.3 5,-0.2 -3,-0.0 -0.913 54.1-153.7-113.1 135.7 13.2 5.9 -1.1 67 122 A K S S+ 0 0 170 -2,-0.4 -1,-0.2 1,-0.1 4,-0.1 0.997 93.4 51.4 -66.5 -67.0 11.9 9.4 -1.9 68 123 A D S S+ 0 0 155 2,-0.1 -1,-0.1 4,-0.0 4,-0.1 0.876 95.9 85.2 -34.8 -60.6 15.2 11.0 -2.9 69 124 A C S S- 0 0 37 1,-0.2 -5,-0.0 2,-0.1 -6,-0.0 0.083 99.5-106.5 -42.4 157.7 16.0 8.2 -5.3 70 125 A P S S+ 0 0 77 0, 0.0 2,-1.3 0, 0.0 -1,-0.2 0.470 101.2 95.0 -69.7 -0.3 14.5 8.4 -8.8 71 126 A W + 0 0 123 -5,-0.3 -5,-0.2 -8,-0.2 2,-0.1 -0.616 57.0 136.7 -94.7 75.7 12.1 5.7 -7.8 72 127 A S > - 0 0 38 -2,-1.3 4,-2.0 -4,-0.1 -5,-0.1 -0.424 68.1 -66.0-109.1-174.5 9.1 7.8 -6.7 73 128 A G T 4 S- 0 0 67 2,-0.2 3,-0.2 1,-0.1 -6,-0.0 0.872 125.1 -0.5 -34.3 -92.1 5.4 7.7 -7.2 74 129 A P T 4 S+ 0 0 125 0, 0.0 -1,-0.1 0, 0.0 -3,-0.0 0.948 125.0 69.3 -69.8 -51.4 5.0 8.2 -10.9 75 130 A S T 4 S+ 0 0 78 2,-0.1 -2,-0.2 -4,-0.0 2,-0.1 0.817 93.4 74.3 -35.6 -41.2 8.7 8.6 -11.8 76 131 A S < 0 0 45 -4,-2.0 -5,-0.1 -3,-0.2 -12,-0.0 -0.470 360.0 360.0 -78.2 148.9 8.9 4.9 -10.9 77 132 A G 0 0 123 -2,-0.1 -2,-0.1 0, 0.0 -1,-0.1 -0.577 360.0 360.0 -76.9 360.0 7.6 2.3 -13.3