==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 12-DEC-05 2D9O . COMPND 2 MOLECULE: DNAJ (HSP40) HOMOLOG, SUBFAMILY C, MEMBER 17; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7732.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 53.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 15.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 161 A G 0 0 139 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-115.0 -21.1 12.4 -2.2 2 162 A S + 0 0 131 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.911 360.0 149.6-142.3 111.2 -20.5 9.2 -4.0 3 163 A S + 0 0 125 -2,-0.4 0, 0.0 1,-0.0 0, 0.0 -0.970 7.7 136.5-140.1 154.1 -19.7 5.9 -2.3 4 164 A G + 0 0 83 -2,-0.3 2,-0.5 0, 0.0 -1,-0.0 0.086 16.9 154.8 164.7 70.0 -20.3 2.2 -2.9 5 165 A S - 0 0 67 1,-0.2 85,-0.1 85,-0.1 83,-0.0 -0.952 21.1-170.5-116.9 122.5 -17.5 -0.3 -2.3 6 166 A S + 0 0 108 -2,-0.5 -1,-0.2 83,-0.1 82,-0.0 0.945 14.0 178.6 -72.9 -50.4 -18.3 -4.0 -1.5 7 167 A G + 0 0 32 1,-0.1 -2,-0.1 82,-0.0 81,-0.0 0.937 17.6 151.2 43.0 71.5 -14.7 -5.0 -0.6 8 168 A Q + 0 0 179 2,-0.1 -1,-0.1 3,-0.0 -3,-0.0 0.871 48.5 65.8 -94.9 -50.4 -15.5 -8.6 0.3 9 169 A G S S- 0 0 61 1,-0.2 3,-0.1 2,-0.0 0, 0.0 0.093 109.3 -42.5 -62.9-177.7 -12.2 -10.3 -0.5 10 170 A T S S- 0 0 55 1,-0.2 2,-1.8 50,-0.0 -1,-0.2 -0.090 70.8 -98.2 -48.4 144.1 -8.9 -9.7 1.4 11 171 A P - 0 0 17 0, 0.0 50,-0.7 0, 0.0 2,-0.2 -0.470 49.9-168.0 -69.8 84.1 -8.2 -6.0 2.2 12 172 A K E -A 60 0A 84 -2,-1.8 76,-0.9 76,-0.2 2,-0.3 -0.501 1.4-156.8 -76.7 143.0 -5.9 -5.2 -0.7 13 173 A L E -A 59 0A 0 46,-2.7 46,-2.6 -2,-0.2 2,-0.5 -0.882 10.7-132.1-121.6 153.4 -3.9 -1.9 -0.6 14 174 A K E -AB 58 85A 61 71,-2.5 71,-2.1 -2,-0.3 2,-0.7 -0.915 14.2-157.9-108.9 122.3 -2.3 0.2 -3.3 15 175 A L E +AB 57 84A 2 42,-1.8 42,-1.7 -2,-0.5 2,-0.4 -0.870 18.7 171.0-102.6 113.0 1.3 1.4 -2.8 16 176 A K E +AB 56 83A 105 67,-1.8 67,-2.2 -2,-0.7 2,-0.3 -0.973 2.3 172.4-124.8 135.4 2.2 4.5 -4.9 17 177 A W - 0 0 31 38,-2.3 2,-0.5 -2,-0.4 65,-0.1 -0.923 42.4 -85.4-137.2 161.8 5.3 6.6 -4.7 18 178 A K + 0 0 184 -2,-0.3 2,-0.3 9,-0.0 37,-0.1 -0.546 54.4 169.9 -70.9 119.1 6.9 9.4 -6.6 19 179 A C - 0 0 38 -2,-0.5 8,-0.1 35,-0.3 3,-0.1 -0.975 31.9-112.6-133.8 147.1 9.0 8.0 -9.5 20 180 A K - 0 0 166 -2,-0.3 3,-0.4 5,-0.2 35,-0.0 -0.191 51.8 -73.3 -70.5 166.6 10.8 9.6 -12.5 21 181 A K S S- 0 0 175 1,-0.2 -1,-0.1 33,-0.0 0, 0.0 0.012 88.8 -41.3 -53.9 167.0 9.7 9.0 -16.1 22 182 A E S S+ 0 0 193 -3,-0.1 2,-0.3 2,-0.1 -1,-0.2 -0.018 93.7 146.4 -35.1 93.5 10.3 5.6 -17.7 23 183 A D - 0 0 99 -3,-0.4 -1,-0.0 2,-0.3 -3,-0.0 -0.901 64.5-116.5-135.6 164.0 13.8 5.2 -16.3 24 184 A E S S+ 0 0 184 -2,-0.3 2,-0.5 2,-0.0 -2,-0.1 0.634 94.2 88.0 -74.0 -13.7 16.1 2.3 -15.2 25 185 A S - 0 0 69 1,-0.2 -2,-0.3 2,-0.0 -5,-0.2 -0.751 62.2-161.5 -91.4 129.5 16.0 3.9 -11.7 26 186 A K - 0 0 141 -2,-0.5 -6,-0.2 3,-0.1 -1,-0.2 0.962 34.2-124.7 -71.9 -54.3 13.2 2.8 -9.4 27 187 A G - 0 0 55 -8,-0.1 -1,-0.1 2,-0.1 3,-0.1 -0.351 65.9 -35.6 141.7 -58.9 13.4 5.7 -6.9 28 188 A G S S+ 0 0 39 1,-0.2 2,-0.3 -11,-0.0 52,-0.1 0.262 112.0 60.1 173.8 30.9 13.9 4.3 -3.4 29 189 A Y - 0 0 14 -12,-0.0 2,-0.3 4,-0.0 -1,-0.2 -0.931 47.7-168.7-156.7 177.4 11.9 1.1 -3.0 30 190 A S >> - 0 0 42 -2,-0.3 4,-2.6 1,-0.1 5,-0.5 -0.937 45.8 -93.7-173.1 150.6 11.4 -2.5 -4.2 31 191 A K H >5S+ 0 0 117 -2,-0.3 4,-1.9 1,-0.2 -1,-0.1 0.832 127.3 45.7 -35.9 -44.3 9.1 -5.4 -4.0 32 192 A D H >5S+ 0 0 94 2,-0.2 4,-3.0 3,-0.2 5,-0.4 0.998 110.5 48.3 -65.4 -67.8 11.4 -6.7 -1.2 33 193 A V H >5S+ 0 0 48 1,-0.3 4,-2.0 2,-0.2 -2,-0.2 0.882 118.1 42.9 -38.5 -54.1 11.8 -3.4 0.8 34 194 A L H X5S+ 0 0 2 -4,-2.6 4,-1.9 2,-0.2 -1,-0.3 0.884 112.4 54.7 -62.7 -39.7 8.0 -2.9 0.7 35 195 A L H XX S+ 0 0 4 -4,-1.9 4,-2.8 -3,-0.2 3,-1.5 0.892 106.1 71.8 -85.3 -45.8 4.5 -4.7 5.6 39 199 A Q H 3< S+ 0 0 107 -4,-3.2 -2,-0.2 1,-0.3 -3,-0.2 0.864 94.3 56.7 -34.6 -55.9 5.5 -8.2 6.7 40 200 A K T 3< S+ 0 0 128 -4,-1.4 -1,-0.3 1,-0.2 -2,-0.2 0.891 116.2 36.2 -45.6 -47.5 6.3 -6.8 10.2 41 201 A Y T <4 S- 0 0 71 -3,-1.5 2,-0.3 -4,-0.5 -2,-0.2 0.960 136.6 -15.0 -72.7 -54.0 2.8 -5.5 10.4 42 202 A G S < S- 0 0 9 -4,-2.8 -1,-0.3 24,-0.1 2,-0.2 -0.992 77.1 -85.8-152.1 156.6 1.0 -8.4 8.6 43 203 A E - 0 0 144 -2,-0.3 2,-1.2 -3,-0.1 19,-0.6 -0.443 37.8-137.7 -65.6 126.9 1.7 -11.4 6.4 44 204 A V E -C 61 0A 17 -2,-0.2 17,-0.2 1,-0.2 3,-0.2 -0.699 22.4-179.1 -90.1 90.3 1.8 -10.3 2.7 45 205 A L E S+ 0 0 74 -2,-1.2 2,-0.4 15,-0.8 -1,-0.2 0.936 73.6 4.1 -52.3 -52.5 -0.1 -13.1 0.9 46 206 A N E -C 60 0A 97 14,-1.2 14,-3.0 -3,-0.2 2,-0.4 -1.000 60.8-171.3-140.9 137.2 0.5 -11.5 -2.5 47 207 A L E +C 59 0A 18 -2,-0.4 2,-0.2 12,-0.2 12,-0.2 -0.860 15.1 174.1-132.3 98.8 2.5 -8.4 -3.5 48 208 A V E -C 58 0A 91 10,-2.1 10,-2.9 -2,-0.4 2,-0.3 -0.685 17.9-142.0-103.0 157.3 2.0 -7.2 -7.1 49 209 A L E -C 57 0A 77 8,-0.3 2,-0.6 -2,-0.2 8,-0.3 -0.895 15.4-120.9-119.9 149.4 3.4 -4.1 -8.8 50 210 A S E +C 56 0A 46 6,-2.5 6,-0.5 -2,-0.3 5,-0.1 -0.781 25.0 177.2 -92.2 122.2 1.9 -1.8 -11.4 51 211 A S S S+ 0 0 116 -2,-0.6 -1,-0.2 1,-0.1 6,-0.0 0.814 70.9 74.6 -90.0 -36.1 3.8 -1.5 -14.7 52 212 A K S S+ 0 0 199 1,-0.1 -1,-0.1 2,-0.0 -2,-0.0 0.907 109.2 24.8 -40.8 -57.8 1.4 0.8 -16.5 53 213 A K S S- 0 0 148 3,-0.0 3,-0.5 -31,-0.0 -1,-0.1 -0.907 90.9-111.4-116.6 142.1 2.5 3.8 -14.4 54 214 A P S S+ 0 0 66 0, 0.0 -35,-0.3 0, 0.0 3,-0.1 -0.406 97.6 23.2 -69.8 141.8 5.9 4.2 -12.6 55 215 A G S S+ 0 0 9 1,-0.2 -38,-2.3 -5,-0.1 2,-0.3 0.922 97.0 118.4 70.0 45.1 5.9 4.2 -8.8 56 216 A T E +AC 16 50A 15 -6,-0.5 -6,-2.5 -3,-0.5 2,-0.3 -0.998 27.0 144.4-145.6 139.3 2.7 2.2 -8.4 57 217 A A E -AC 15 49A 0 -42,-1.7 -42,-1.8 -2,-0.3 2,-0.4 -0.960 32.5-130.2-160.8 173.9 1.9 -1.2 -6.9 58 218 A V E -AC 14 48A 24 -10,-2.9 -10,-2.1 -44,-0.3 2,-0.3 -0.971 15.7-160.5-141.9 123.7 -0.7 -3.2 -5.0 59 219 A V E -AC 13 47A 1 -46,-2.6 -46,-2.7 -2,-0.4 2,-0.5 -0.731 9.6-143.4-102.9 152.2 -0.2 -5.4 -1.9 60 220 A E E -AC 12 46A 52 -14,-3.0 -14,-1.2 -2,-0.3 -15,-0.8 -0.949 17.0-166.8-119.8 114.6 -2.5 -8.1 -0.6 61 221 A F E - C 0 44A 0 -50,-0.7 -17,-0.1 -2,-0.5 3,-0.1 -0.419 20.7-144.0 -92.4 170.4 -2.9 -8.5 3.2 62 222 A A S S+ 0 0 42 -19,-0.6 2,-0.3 1,-0.1 -1,-0.1 0.645 82.3 33.4-105.8 -23.6 -4.5 -11.4 5.1 63 223 A T > - 0 0 77 -20,-0.2 4,-1.3 -52,-0.1 -1,-0.1 -0.896 68.8-131.3-132.1 161.4 -6.1 -9.4 7.9 64 224 A V H > S+ 0 0 73 -2,-0.3 4,-2.6 2,-0.2 5,-0.2 0.873 103.4 60.2 -78.2 -39.8 -7.7 -6.0 8.3 65 225 A K H > S+ 0 0 153 2,-0.2 4,-2.4 1,-0.2 5,-0.3 0.961 107.8 43.3 -51.6 -60.6 -5.8 -5.1 11.4 66 226 A A H > S+ 0 0 4 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.940 111.8 54.9 -51.4 -54.3 -2.4 -5.3 9.7 67 227 A A H X S+ 0 0 0 -4,-1.3 4,-0.8 2,-0.2 3,-0.4 0.930 109.6 46.3 -44.9 -59.1 -3.6 -3.5 6.6 68 228 A E H >X S+ 0 0 84 -4,-2.6 3,-2.1 1,-0.3 4,-1.5 0.945 113.8 47.3 -50.3 -56.7 -4.8 -0.5 8.6 69 229 A L H 3X>S+ 0 0 67 -4,-2.4 4,-1.3 1,-0.3 5,-1.2 0.802 110.8 54.1 -56.6 -29.4 -1.6 -0.3 10.7 70 230 A A H 3<5S+ 0 0 0 -4,-2.5 -1,-0.3 -3,-0.4 -2,-0.2 0.594 111.6 44.8 -80.7 -11.6 0.2 -0.6 7.3 71 231 A V H <<5S+ 0 0 25 -3,-2.1 -2,-0.2 -4,-0.8 -1,-0.2 0.557 125.1 30.6-105.4 -14.5 -1.7 2.3 6.0 72 232 A Q H <5S+ 0 0 153 -4,-1.5 -3,-0.2 -5,-0.2 -2,-0.2 0.808 129.3 27.6-106.9 -60.7 -1.3 4.5 9.1 73 233 A N T <5S+ 0 0 96 -4,-1.3 2,-0.3 -5,-0.2 -3,-0.2 0.999 109.5 65.5 -67.0 -74.6 2.0 3.7 10.8 74 234 A E < + 0 0 19 -5,-1.2 10,-0.1 1,-0.2 3,-0.1 -0.331 53.1 158.6 -55.1 112.9 4.1 2.4 7.9 75 235 A V - 0 0 76 -2,-0.3 7,-0.9 1,-0.2 2,-0.8 0.355 49.0-121.0-117.8 -0.2 4.6 5.5 5.7 76 236 A G B -D 81 0B 10 5,-0.3 2,-0.4 -39,-0.1 -1,-0.2 -0.841 69.0 -8.2 101.7-106.8 7.7 4.4 3.9 77 237 A L - 0 0 85 3,-1.8 3,-0.2 -2,-0.8 5,-0.0 -0.995 56.4-125.6-135.1 138.3 10.6 6.7 4.3 78 238 A V S S+ 0 0 144 -2,-0.4 -1,-0.1 1,-0.3 0, 0.0 0.899 116.4 45.5 -42.8 -52.4 10.9 10.2 5.9 79 239 A D S S+ 0 0 132 1,-0.3 -1,-0.3 -3,-0.1 -3,-0.0 0.893 130.1 25.1 -60.7 -41.3 12.4 11.5 2.7 80 240 A N S S- 0 0 50 -3,-0.2 -3,-1.8 -52,-0.1 2,-1.3 -0.779 77.1-159.2-130.1 88.5 9.8 9.7 0.6 81 241 A P B -D 76 0B 85 0, 0.0 -5,-0.3 0, 0.0 -3,-0.1 -0.511 27.4-127.9 -69.8 93.4 6.6 9.1 2.5 82 242 A L - 0 0 14 -2,-1.3 2,-0.8 -7,-0.9 -65,-0.2 0.088 14.2-122.8 -37.7 152.0 5.0 6.2 0.5 83 243 A K E -B 16 0A 129 -67,-2.2 -67,-1.8 2,-0.0 2,-0.9 -0.749 31.9-178.4-107.6 84.7 1.4 6.8 -0.6 84 244 A I E +B 15 0A 20 -2,-0.8 2,-0.3 -69,-0.2 -69,-0.2 -0.741 10.6 173.1 -87.6 107.4 -0.6 3.9 0.8 85 245 A S E -B 14 0A 53 -71,-2.1 -71,-2.5 -2,-0.9 2,-1.1 -0.812 38.8-109.7-114.6 155.4 -4.2 4.3 -0.3 86 246 A W - 0 0 42 -2,-0.3 3,-0.2 -73,-0.2 -73,-0.2 -0.708 29.3-176.1 -86.6 97.8 -7.2 1.9 0.1 87 247 A L S S- 0 0 80 -2,-1.1 2,-0.3 -75,-0.3 -1,-0.2 0.919 71.1 -14.4 -58.0 -46.2 -7.9 0.7 -3.4 88 248 A E S S+ 0 0 123 -76,-0.9 -1,-0.2 1,-0.2 -76,-0.2 -0.973 118.1 37.6-160.5 144.7 -11.0 -1.2 -2.2 89 249 A G - 0 0 21 -2,-0.3 -1,-0.2 1,-0.2 -2,-0.1 0.983 64.5-173.9 77.5 65.7 -12.5 -2.4 1.1 90 250 A Q - 0 0 109 -4,-0.1 -1,-0.2 -3,-0.1 2,-0.2 -0.766 25.5-114.4 -97.0 137.3 -11.8 0.4 3.5 91 251 A P - 0 0 42 0, 0.0 2,-0.4 0, 0.0 -1,-0.0 -0.440 33.8-177.8 -69.8 137.0 -12.6 0.1 7.2 92 252 A Q + 0 0 148 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.944 16.0 138.9-142.8 117.7 -15.3 2.4 8.6 93 253 A D - 0 0 166 -2,-0.4 2,-0.3 2,-0.0 0, 0.0 -0.968 28.1-152.2-158.8 140.5 -16.4 2.6 12.2 94 254 A A - 0 0 75 -2,-0.3 4,-0.1 2,-0.2 -2,-0.0 -0.748 19.4-133.7-113.4 161.7 -17.4 5.4 14.7 95 255 A S S S+ 0 0 137 -2,-0.3 -1,-0.0 2,-0.1 -2,-0.0 -0.222 82.3 48.3-106.1 41.6 -17.2 5.6 18.5 96 256 A G S S- 0 0 47 0, 0.0 2,-0.5 0, 0.0 -2,-0.2 -0.966 99.6 -56.3-163.6 177.0 -20.7 7.0 19.0 97 257 A P - 0 0 137 0, 0.0 -2,-0.1 0, 0.0 2,-0.1 -0.530 54.1-147.6 -69.7 115.1 -24.4 6.7 18.2 98 258 A S + 0 0 118 -2,-0.5 2,-0.3 -4,-0.1 0, 0.0 -0.312 24.8 161.1 -79.4 165.6 -24.9 6.9 14.4 99 259 A S 0 0 122 -2,-0.1 -1,-0.0 0, 0.0 0, 0.0 -0.971 360.0 360.0-169.5 176.2 -27.9 8.4 12.6 100 260 A G 0 0 127 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.440 360.0 360.0 -79.3 360.0 -29.2 9.9 9.4