==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 14-DEC-05 2DAK . COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ZHAO,T.KIGAWA,M.SATO,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN . 63 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5380.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 34 54.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 41.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 137 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 83.1 -22.5 -6.5 1.3 2 2 A S + 0 0 122 2,-0.0 2,-0.1 0, 0.0 0, 0.0 -0.920 360.0 143.0-117.8 142.1 -22.5 -3.0 0.0 3 3 A S + 0 0 121 -2,-0.4 4,-0.1 4,-0.0 3,-0.0 -0.370 5.9 153.5-178.2 88.5 -20.2 -1.5 -2.7 4 4 A G + 0 0 78 2,-0.1 3,-0.1 1,-0.1 -2,-0.0 0.909 62.9 43.6 -83.9 -88.4 -21.5 1.0 -5.1 5 5 A S S S- 0 0 113 1,-0.1 -1,-0.1 0, 0.0 0, 0.0 -0.285 103.1 -87.2 -61.1 144.8 -18.8 3.3 -6.5 6 6 A S + 0 0 116 -3,-0.0 -1,-0.1 1,-0.0 -2,-0.1 0.021 62.5 149.8 -47.8 160.2 -15.6 1.5 -7.4 7 7 A G - 0 0 46 -3,-0.1 -1,-0.0 -4,-0.1 -4,-0.0 -0.965 45.0 -65.0 179.8 172.6 -13.0 1.0 -4.7 8 8 A P - 0 0 54 0, 0.0 2,-0.1 0, 0.0 19,-0.1 -0.367 56.1-100.8 -75.0 155.2 -10.2 -1.1 -3.3 9 9 A P > - 0 0 45 0, 0.0 4,-1.3 0, 0.0 21,-0.1 -0.381 17.0-145.7 -75.0 153.9 -10.8 -4.7 -2.2 10 10 A E H > S+ 0 0 144 2,-0.2 4,-3.5 3,-0.1 5,-0.2 0.912 96.0 57.5 -83.6 -49.3 -11.1 -5.5 1.5 11 11 A D H > S+ 0 0 113 2,-0.2 4,-3.5 1,-0.2 5,-0.1 0.916 109.8 47.0 -45.9 -52.8 -9.4 -8.9 1.5 12 12 A C H > S+ 0 0 2 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.976 110.5 50.5 -53.3 -63.1 -6.3 -7.4 -0.0 13 13 A V H X S+ 0 0 19 -4,-1.3 4,-2.5 1,-0.2 -1,-0.2 0.883 114.5 46.7 -40.8 -50.1 -6.3 -4.5 2.5 14 14 A T H X S+ 0 0 72 -4,-3.5 4,-4.3 2,-0.2 5,-0.2 0.978 109.5 51.6 -57.4 -61.9 -6.6 -7.2 5.2 15 15 A T H X S+ 0 0 64 -4,-3.5 4,-1.5 2,-0.2 -2,-0.2 0.905 112.3 46.9 -39.7 -61.3 -3.9 -9.5 3.8 16 16 A I H >X>S+ 0 0 0 -4,-2.6 3,-2.2 1,-0.3 4,-0.9 0.953 115.5 43.6 -46.1 -66.6 -1.5 -6.6 3.7 17 17 A V H ><5S+ 0 0 61 -4,-2.5 3,-1.9 1,-0.3 -1,-0.3 0.876 105.3 65.6 -47.0 -43.2 -2.3 -5.4 7.2 18 18 A S H 3<5S+ 0 0 100 -4,-4.3 -1,-0.3 1,-0.3 -2,-0.2 0.846 97.8 54.2 -48.1 -38.3 -2.2 -9.0 8.2 19 19 A M H <<5S- 0 0 97 -3,-2.2 -1,-0.3 -4,-1.5 -2,-0.2 0.768 132.5 -95.6 -68.0 -26.8 1.5 -8.9 7.3 20 20 A G T <<5S+ 0 0 67 -3,-1.9 -3,-0.2 -4,-0.9 2,-0.2 0.642 77.3 141.3 115.0 30.3 1.8 -5.9 9.6 21 21 A F < - 0 0 39 -5,-0.8 2,-0.2 -4,-0.1 -1,-0.2 -0.558 57.8 -90.1 -99.1 165.1 1.5 -3.0 7.2 22 22 A S > - 0 0 67 -2,-0.2 4,-2.4 1,-0.1 5,-0.2 -0.534 26.3-132.8 -76.0 137.8 -0.2 0.3 7.7 23 23 A R H > S+ 0 0 159 1,-0.2 4,-2.3 -2,-0.2 5,-0.1 0.881 109.9 52.5 -55.1 -41.4 -3.9 0.4 6.6 24 24 A D H > S+ 0 0 110 2,-0.2 4,-3.7 1,-0.2 -1,-0.2 0.927 107.4 52.1 -60.6 -47.1 -3.1 3.6 4.7 25 25 A Q H > S+ 0 0 37 2,-0.2 4,-4.3 1,-0.2 5,-0.3 0.954 107.8 50.5 -53.2 -57.2 -0.2 2.0 2.9 26 26 A A H X S+ 0 0 0 -4,-2.4 4,-3.1 1,-0.2 -1,-0.2 0.927 115.0 44.1 -46.1 -55.7 -2.4 -1.0 1.8 27 27 A L H X S+ 0 0 71 -4,-2.3 4,-2.8 2,-0.2 5,-0.3 0.965 117.7 44.3 -54.2 -59.2 -5.0 1.5 0.5 28 28 A K H X S+ 0 0 131 -4,-3.7 4,-3.5 2,-0.2 5,-0.3 0.958 113.7 50.4 -49.3 -62.0 -2.4 3.7 -1.1 29 29 A A H X S+ 0 0 0 -4,-4.3 4,-2.4 2,-0.2 3,-0.3 0.922 111.4 48.5 -40.5 -64.9 -0.5 0.8 -2.6 30 30 A L H ><>S+ 0 0 1 -4,-3.1 5,-2.1 1,-0.3 3,-1.5 0.925 115.5 42.6 -40.6 -67.0 -3.6 -0.7 -4.1 31 31 A R H ><5S+ 0 0 209 -4,-2.8 3,-1.0 1,-0.3 -1,-0.3 0.818 114.4 53.6 -50.8 -33.4 -4.6 2.6 -5.6 32 32 A A H 3<5S+ 0 0 52 -4,-3.5 -1,-0.3 -5,-0.3 -2,-0.3 0.782 113.9 42.0 -72.3 -28.0 -1.0 3.0 -6.5 33 33 A T T <<5S- 0 0 14 -4,-2.4 -1,-0.3 -3,-1.5 -2,-0.2 -0.250 124.7 -99.0-112.2 42.0 -1.2 -0.4 -8.2 34 34 A N T < 5S- 0 0 143 -3,-1.0 -3,-0.3 1,-0.2 -4,-0.1 0.895 88.0 -46.7 40.6 53.6 -4.6 0.1 -9.8 35 35 A N S S+ 0 0 75 -2,-0.4 4,-2.6 3,-0.1 5,-0.3 0.934 90.6 42.5 -87.7 -63.9 -2.4 -7.1 -4.5 38 38 A E H > S+ 0 0 171 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.940 120.2 43.7 -46.7 -60.7 0.7 -8.5 -5.9 39 39 A R H > S+ 0 0 147 2,-0.2 4,-4.0 1,-0.2 3,-0.4 0.922 109.9 58.2 -51.5 -50.6 2.0 -5.2 -7.1 40 40 A A H > S+ 0 0 0 -4,-0.5 4,-3.7 1,-0.3 -2,-0.2 0.938 104.4 48.8 -43.4 -65.3 0.9 -3.6 -3.9 41 41 A V H X S+ 0 0 36 -4,-2.6 4,-3.1 1,-0.3 -1,-0.3 0.839 116.1 47.0 -44.3 -38.1 3.1 -5.9 -1.8 42 42 A D H X S+ 0 0 88 -4,-1.7 4,-2.7 -3,-0.4 -2,-0.3 0.954 111.1 47.6 -69.7 -52.2 5.8 -5.0 -4.4 43 43 A W H X S+ 0 0 79 -4,-4.0 4,-1.3 2,-0.2 -2,-0.2 0.821 116.1 50.1 -57.7 -30.9 5.1 -1.2 -4.2 44 44 A I H >X S+ 0 0 0 -4,-3.7 4,-1.9 -5,-0.4 3,-1.1 0.995 107.7 47.4 -69.8 -67.5 5.2 -1.8 -0.5 45 45 A F H 3X S+ 0 0 121 -4,-3.1 4,-2.4 1,-0.3 -2,-0.2 0.843 107.8 60.5 -40.9 -43.5 8.5 -3.7 -0.1 46 46 A S H 3X S+ 0 0 61 -4,-2.7 4,-1.6 1,-0.2 5,-0.4 0.928 103.7 48.4 -51.5 -51.6 10.0 -1.0 -2.4 47 47 A H H << S+ 0 0 69 -4,-1.3 -1,-0.2 -3,-1.1 -2,-0.2 0.913 108.1 55.0 -55.5 -46.3 9.1 1.7 0.2 48 48 A I H < S+ 0 0 99 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.892 102.8 59.2 -54.0 -42.7 10.6 -0.5 2.9 49 49 A D H < S- 0 0 122 -4,-2.4 -2,-0.2 -5,-0.2 -1,-0.2 0.969 120.2-103.4 -49.1 -69.3 13.8 -0.6 0.8 50 50 A D S < S+ 0 0 137 -4,-1.6 2,-2.6 1,-0.0 3,-0.3 0.011 92.8 105.8 168.4 -38.0 14.3 3.2 0.8 51 51 A L + 0 0 130 -5,-0.4 -2,-0.1 1,-0.2 3,-0.1 -0.430 37.0 155.7 -67.7 78.8 13.3 4.3 -2.6 52 52 A D - 0 0 90 -2,-2.6 2,-0.3 1,-0.3 -1,-0.2 0.967 60.4 -60.3 -70.5 -55.8 10.0 5.9 -1.4 53 53 A A S S- 0 0 76 -3,-0.3 -1,-0.3 3,-0.1 3,-0.3 -0.963 77.4 -33.5-176.9 176.3 9.6 8.3 -4.2 54 54 A E S S- 0 0 172 -2,-0.3 -1,-0.1 1,-0.2 -2,-0.0 0.075 95.3 -55.9 -41.6 157.5 11.2 11.3 -6.0 55 55 A A S S+ 0 0 89 -3,-0.1 2,-0.2 1,-0.0 -1,-0.2 -0.144 84.1 142.0 -42.5 118.6 13.2 13.7 -3.9 56 56 A A - 0 0 82 -3,-0.3 -3,-0.1 0, 0.0 -4,-0.1 -0.815 54.6-102.7-168.7 123.9 10.8 14.8 -1.2 57 57 A M - 0 0 186 -2,-0.2 2,-0.3 1,-0.1 0, 0.0 -0.074 38.0-135.2 -47.1 145.6 11.2 15.4 2.5 58 58 A S - 0 0 87 1,-0.1 -1,-0.1 3,-0.0 3,-0.1 -0.833 20.8-101.4-110.0 147.5 10.0 12.7 4.8 59 59 A G - 0 0 55 -2,-0.3 2,-0.9 1,-0.1 -1,-0.1 -0.164 47.4 -89.3 -61.5 157.8 7.9 13.1 7.9 60 60 A P S S+ 0 0 141 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.612 82.2 110.0 -75.0 105.6 9.5 12.8 11.4 61 61 A S - 0 0 113 -2,-0.9 2,-0.2 -3,-0.1 -2,-0.0 -0.709 63.0-121.5-178.9 123.7 9.4 9.2 12.3 62 62 A S 0 0 120 -2,-0.2 0, 0.0 1,-0.1 0, 0.0 -0.475 360.0 360.0 -72.5 139.8 12.1 6.5 12.6 63 63 A G 0 0 126 -2,-0.2 -1,-0.1 -15,-0.0 0, 0.0 0.212 360.0 360.0 -83.9 360.0 11.6 3.4 10.5