==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 26-APR-06 2DNQ . COMPND 2 MOLECULE: RNA-BINDING PROTEIN 4B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6396.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 57.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 22.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 17.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -6 A G 0 0 55 0, 0.0 7,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 157.3 -2.7 24.0 -4.1 2 -5 A S + 0 0 122 5,-0.0 5,-0.0 1,-0.0 0, 0.0 0.882 360.0 52.3 -96.9 -60.1 -3.7 27.6 -4.7 3 -4 A S S S+ 0 0 138 2,-0.0 -1,-0.0 0, 0.0 0, 0.0 0.870 112.0 56.4 -44.9 -43.6 -7.4 27.8 -4.0 4 -3 A G - 0 0 38 1,-0.1 47,-0.0 2,-0.0 0, 0.0 -0.023 68.1-155.4 -79.7-171.6 -6.8 26.1 -0.7 5 -2 A S S S+ 0 0 119 2,-0.1 -1,-0.1 0, 0.0 -2,-0.0 0.569 82.1 60.6-132.4 -49.0 -4.5 27.1 2.1 6 -1 A S S S- 0 0 78 1,-0.2 2,-0.3 3,-0.0 45,-0.0 0.944 85.5-165.3 -50.5 -55.9 -3.6 24.1 4.2 7 0 A G + 0 0 17 2,-0.0 -1,-0.2 -5,-0.0 -2,-0.1 -0.793 43.9 24.5 106.4-148.3 -1.9 22.4 1.2 8 1 A M - 0 0 109 -2,-0.3 2,-0.4 1,-0.1 42,-0.2 -0.017 68.9-141.4 -50.0 158.5 -0.9 18.8 0.9 9 2 A V E -A 49 0A 4 40,-1.3 40,-2.0 42,-0.2 -1,-0.1 -0.973 7.1-135.1-133.7 120.1 -2.7 16.2 3.0 10 3 A K E -A 48 0A 75 -2,-0.4 68,-1.0 38,-0.2 2,-0.4 -0.327 19.1-154.8 -69.3 152.2 -1.1 13.2 4.7 11 4 A L E -A 47 0A 0 36,-0.7 36,-1.6 66,-0.2 2,-0.5 -0.996 6.5-141.6-134.4 136.4 -2.8 9.8 4.5 12 5 A F E -AB 46 75A 68 63,-2.2 63,-2.2 -2,-0.4 2,-0.4 -0.833 18.5-177.7 -99.8 129.6 -2.5 6.8 6.8 13 6 A I E +AB 45 74A 1 32,-1.8 32,-2.8 -2,-0.5 2,-0.2 -0.960 6.6 172.7-131.0 115.9 -2.5 3.3 5.3 14 7 A G E +AB 44 73A 10 59,-1.7 59,-2.4 -2,-0.4 30,-0.2 -0.657 52.8 48.0-115.9 173.0 -2.4 0.1 7.5 15 8 A N S S+ 0 0 94 28,-0.7 -1,-0.2 -2,-0.2 29,-0.1 0.889 73.0 172.7 65.7 40.3 -2.7 -3.6 6.9 16 9 A L - 0 0 19 27,-1.2 -1,-0.2 -3,-0.2 55,-0.0 -0.585 23.0-134.2 -84.1 143.1 -0.2 -3.5 4.0 17 10 A P - 0 0 40 0, 0.0 -1,-0.1 0, 0.0 51,-0.1 0.094 22.8-105.9 -78.7-165.0 1.1 -6.7 2.4 18 11 A R S S+ 0 0 228 1,-0.1 -2,-0.0 3,-0.0 25,-0.0 0.737 115.5 55.3 -97.1 -29.9 4.7 -7.7 1.5 19 12 A E S S+ 0 0 132 49,-0.1 -1,-0.1 2,-0.1 49,-0.1 0.745 82.5 112.6 -74.5 -24.1 4.3 -7.2 -2.3 20 13 A A - 0 0 13 47,-0.1 2,-0.4 4,-0.1 -4,-0.0 -0.199 52.0-163.9 -51.7 135.8 3.1 -3.7 -1.8 21 14 A T > - 0 0 58 1,-0.1 4,-2.2 18,-0.0 5,-0.3 -0.967 35.2-112.0-129.1 144.4 5.7 -1.1 -3.1 22 15 A E H > S+ 0 0 85 -2,-0.4 4,-2.0 1,-0.2 5,-0.1 0.799 121.5 48.2 -38.7 -35.1 6.1 2.6 -2.5 23 16 A Q H > S+ 0 0 143 2,-0.2 4,-2.6 1,-0.2 5,-0.4 0.991 103.7 54.0 -71.7 -65.9 5.1 2.9 -6.1 24 17 A E H > S+ 0 0 91 1,-0.3 4,-1.8 2,-0.2 -2,-0.2 0.837 116.0 43.8 -35.9 -45.4 2.0 0.7 -6.3 25 18 A I H X S+ 0 0 4 -4,-2.2 4,-1.2 2,-0.2 -1,-0.3 0.960 112.6 50.1 -68.1 -53.1 0.6 2.8 -3.4 26 19 A R H >X S+ 0 0 108 -4,-2.0 4,-1.9 -5,-0.3 3,-1.4 0.946 111.1 49.0 -50.1 -57.3 1.6 6.1 -4.8 27 20 A S H >X S+ 0 0 67 -4,-2.6 4,-1.1 1,-0.3 3,-0.6 0.936 101.1 62.9 -48.8 -55.5 0.1 5.4 -8.2 28 21 A L H 3< S+ 0 0 9 -4,-1.8 -1,-0.3 -5,-0.4 3,-0.3 0.810 111.6 40.0 -40.2 -35.8 -3.2 4.2 -6.6 29 22 A F H X< S+ 0 0 1 -3,-1.4 3,-1.9 -4,-1.2 -1,-0.3 0.791 100.4 71.2 -85.4 -31.4 -3.4 7.8 -5.4 30 23 A E H << S+ 0 0 75 -4,-1.9 3,-0.3 -3,-0.6 -2,-0.2 0.656 89.8 66.5 -59.3 -13.9 -2.1 9.4 -8.6 31 24 A Q T 3< S+ 0 0 127 -4,-1.1 -1,-0.3 -3,-0.3 -2,-0.2 0.782 112.6 28.6 -78.0 -28.5 -5.5 8.3 -10.0 32 25 A Y S < S- 0 0 63 -3,-1.9 26,-0.3 1,-0.4 -1,-0.2 0.069 140.1 -20.6-118.3 21.3 -7.4 10.8 -7.7 33 26 A G S S- 0 0 20 -3,-0.3 -1,-0.4 -4,-0.2 -2,-0.1 -0.405 79.3 -77.8 143.3 139.7 -4.6 13.3 -7.4 34 27 A K - 0 0 128 -2,-0.1 16,-1.2 -3,-0.1 2,-0.3 -0.224 47.1-131.5 -58.0 146.2 -0.8 13.7 -7.8 35 28 A V E -C 49 0A 2 14,-0.2 14,-0.2 1,-0.1 3,-0.1 -0.764 22.0-176.4-103.8 149.1 1.3 12.4 -5.0 36 29 A L E + 0 0 76 12,-2.9 2,-0.3 1,-0.4 -1,-0.1 0.821 69.3 13.1-105.4 -58.7 4.1 14.1 -3.2 37 30 A E E - 0 0 104 11,-0.4 11,-2.0 -11,-0.0 -1,-0.4 -0.898 57.7-178.4-124.0 153.2 5.6 11.7 -0.7 38 31 A C E +C 47 0A 23 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.886 9.1 164.5-155.0 118.4 5.2 7.9 -0.2 39 32 A D E -C 46 0A 78 7,-1.7 7,-1.5 -2,-0.3 2,-0.3 -0.910 19.9-156.0-132.9 160.2 6.7 5.7 2.5 40 33 A I E +C 45 0A 40 -2,-0.3 2,-0.3 5,-0.2 5,-0.3 -0.865 31.7 138.0-142.4 105.0 6.1 2.2 3.9 41 34 A I E > +C 44 0A 91 3,-2.8 3,-2.2 -2,-0.3 -2,-0.1 -0.968 58.9 18.1-144.2 158.6 7.2 1.2 7.4 42 35 A K T 3 S- 0 0 172 -2,-0.3 -1,-0.2 1,-0.3 3,-0.1 0.918 129.3 -59.5 45.4 54.4 5.9 -0.8 10.3 43 36 A N T 3 S+ 0 0 136 1,-0.2 -27,-1.2 -3,-0.1 -28,-0.7 0.766 124.0 102.7 47.9 26.3 3.4 -2.5 8.1 44 37 A Y E < -AC 14 41A 53 -3,-2.2 -3,-2.8 -30,-0.2 2,-0.4 -0.959 55.5-157.3-137.4 154.7 2.1 1.0 7.5 45 38 A G E -AC 13 40A 1 -32,-2.8 -32,-1.8 -2,-0.3 2,-0.5 -0.992 6.0-149.3-136.9 142.8 2.4 3.5 4.6 46 39 A F E -AC 12 39A 39 -7,-1.5 -7,-1.7 -2,-0.4 2,-0.4 -0.937 13.9-174.5-114.2 128.3 2.0 7.3 4.4 47 40 A V E -AC 11 38A 1 -36,-1.6 -36,-0.7 -2,-0.5 2,-0.6 -0.980 9.3-157.8-125.1 129.7 0.8 9.0 1.3 48 41 A H E -A 10 0A 43 -11,-2.0 -12,-2.9 -2,-0.4 -11,-0.4 -0.919 12.1-162.3-109.8 119.1 0.6 12.8 0.7 49 42 A I E -AC 9 35A 0 -40,-2.0 -40,-1.3 -2,-0.6 -14,-0.2 -0.474 24.2-118.4 -93.8 167.3 -1.8 14.1 -1.9 50 43 A E S S+ 0 0 74 -16,-1.2 2,-0.2 -42,-0.2 -1,-0.1 0.999 91.2 16.3 -66.4 -75.0 -1.8 17.5 -3.6 51 44 A D S > S- 0 0 57 -43,-0.1 4,-0.9 1,-0.1 -42,-0.2 -0.548 74.0-122.4 -98.6 165.8 -5.2 19.0 -2.5 52 45 A K H >> S+ 0 0 57 2,-0.2 3,-1.8 1,-0.2 4,-1.3 0.981 109.3 55.6 -69.8 -59.6 -7.5 18.0 0.3 53 46 A T H 3> S+ 0 0 87 1,-0.3 4,-1.5 2,-0.2 -1,-0.2 0.809 106.0 56.4 -42.8 -34.6 -10.6 17.3 -1.7 54 47 A A H 3> S+ 0 0 19 1,-0.2 4,-2.2 2,-0.2 -1,-0.3 0.872 99.5 59.0 -67.7 -37.8 -8.5 14.9 -3.7 55 48 A A H < S+ 0 0 2 -4,-2.3 3,-1.8 -5,-0.2 -1,-0.2 0.776 86.4 107.7 -34.3 -33.9 -8.7 3.0 -2.1 63 56 A H T 3< S+ 0 0 75 -4,-3.0 10,-0.2 -5,-0.4 3,-0.2 -0.272 95.2 0.1 -53.2 125.6 -10.5 2.0 1.1 64 57 A H T 3 S+ 0 0 119 8,-1.6 2,-1.0 1,-0.2 -1,-0.3 0.870 89.5 173.6 60.1 37.9 -10.8 -1.8 1.2 65 58 A Y < - 0 0 100 -3,-1.8 7,-0.7 7,-0.4 2,-0.5 -0.687 37.7-123.2 -82.8 104.3 -9.0 -2.0 -2.1 66 59 A K B +D 71 0B 154 -2,-1.0 2,-0.6 5,-0.2 5,-0.2 -0.240 42.7 173.7 -49.0 98.1 -8.3 -5.7 -2.8 67 60 A L - 0 0 12 3,-2.5 3,-0.1 -2,-0.5 -47,-0.1 -0.937 66.9 -22.5-118.6 111.5 -4.6 -5.6 -3.2 68 61 A H S S- 0 0 100 -2,-0.6 -1,-0.2 1,-0.2 3,-0.1 0.853 128.7 -49.8 60.7 35.4 -2.7 -8.9 -3.6 69 62 A G S S+ 0 0 64 1,-0.3 2,-0.3 -52,-0.0 -1,-0.2 0.823 118.5 112.2 73.5 31.6 -5.6 -10.7 -1.9 70 63 A V - 0 0 27 -5,-0.2 -3,-2.5 -3,-0.1 2,-0.8 -0.964 66.4-133.3-136.6 153.0 -5.6 -8.2 1.0 71 64 A N B -D 66 0B 88 -2,-0.3 -5,-0.2 -5,-0.2 -7,-0.1 -0.681 29.7-159.5-106.8 77.6 -8.0 -5.5 2.3 72 65 A I - 0 0 4 -2,-0.8 -8,-1.6 -7,-0.7 -7,-0.4 -0.195 12.6-129.9 -55.3 144.7 -5.8 -2.6 3.0 73 66 A N E -B 14 0A 56 -59,-2.4 -59,-1.7 -10,-0.2 2,-0.4 -0.845 21.1-166.9-103.8 135.4 -7.2 0.0 5.4 74 67 A V E +B 13 0A 4 -2,-0.4 2,-0.3 -61,-0.2 -61,-0.2 -0.967 9.7 171.2-124.2 137.5 -7.2 3.7 4.6 75 68 A E E -B 12 0A 108 -63,-2.2 -63,-2.2 -2,-0.4 2,-1.5 -0.994 41.0-111.3-146.9 137.1 -7.9 6.6 6.9 76 69 A A - 0 0 51 -2,-0.3 -65,-0.2 1,-0.2 -66,-0.1 -0.497 30.6-166.9 -69.0 91.0 -7.6 10.4 6.6 77 70 A S S S+ 0 0 60 -2,-1.5 2,-1.2 1,-0.2 -1,-0.2 0.926 79.5 52.2 -42.2 -62.9 -4.7 11.1 8.9 78 71 A K S S- 0 0 80 -68,-1.0 -1,-0.2 -3,-0.1 -2,-0.0 -0.670 87.2-155.1 -82.9 96.5 -5.3 14.8 9.0 79 72 A N - 0 0 125 -2,-1.2 -2,-0.1 1,-0.1 -1,-0.0 -0.309 23.2 -97.7 -69.7 154.3 -9.0 15.2 9.9 80 73 A K - 0 0 131 1,-0.0 2,-0.4 -4,-0.0 -1,-0.1 -0.174 34.0-141.7 -67.5 165.0 -10.9 18.3 8.8 81 74 A S - 0 0 113 2,-0.0 2,-0.5 0, 0.0 -1,-0.0 -0.997 7.3-158.1-136.0 134.1 -11.5 21.2 11.2 82 75 A K - 0 0 203 -2,-0.4 2,-0.6 0, 0.0 -2,-0.0 -0.938 22.3-124.3-114.8 130.6 -14.5 23.4 11.7 83 76 A A + 0 0 74 -2,-0.5 -2,-0.0 1,-0.2 3,-0.0 -0.595 32.3 171.8 -74.5 116.1 -14.4 26.8 13.3 84 77 A S + 0 0 116 -2,-0.6 -1,-0.2 3,-0.0 2,-0.1 0.934 57.2 70.2 -87.8 -60.1 -16.8 27.0 16.2 85 78 A S S S+ 0 0 119 2,-0.1 3,-0.2 3,-0.0 -1,-0.0 -0.393 103.2 8.4 -63.3 130.5 -16.0 30.3 17.9 86 79 A G S S- 0 0 50 1,-0.2 0, 0.0 -2,-0.1 0, 0.0 0.378 85.2 -97.9 75.2 146.4 -17.2 33.2 15.7 87 80 A P - 0 0 117 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.418 47.9-128.3 -77.2 2.3 -19.3 33.1 12.6 88 81 A S + 0 0 96 -3,-0.2 -2,-0.1 1,-0.1 -5,-0.0 0.880 50.4 160.3 50.5 42.2 -16.1 33.3 10.5 89 82 A S 0 0 116 1,-0.0 -1,-0.1 0, 0.0 -3,-0.0 0.935 360.0 360.0 -58.4 -49.1 -17.7 36.2 8.6 90 83 A G 0 0 123 0, 0.0 -1,-0.0 0, 0.0 -2,-0.0 -0.207 360.0 360.0-177.2 360.0 -14.4 37.5 7.4