==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 04-JAN-00 1DQC . COMPND 2 MOLECULE: TACHYCITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: TACHYPLEUS TRIDENTATUS; . AUTHOR T.SUETAKE,S.TSUDA,S.KAWABATA,K.MIURA,K.KAWANO . 73 1 5 5 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5133.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 52.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 20.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 16.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A Y 0 0 256 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -19.4 -22.6 5.1 4.0 2 2 A L - 0 0 72 1,-0.2 0, 0.0 2,-0.0 0, 0.0 0.931 360.0-173.0 44.0 83.9 -18.9 6.0 4.2 3 3 A A S S+ 0 0 63 7,-0.0 -1,-0.2 2,-0.0 0, 0.0 0.279 76.3 35.5 -90.3 13.9 -17.7 3.0 6.3 4 4 A F + 0 0 84 29,-0.0 9,-0.0 7,-0.0 -2,-0.0 0.526 51.0 158.7-126.5 -79.8 -14.2 4.6 6.6 5 5 A R + 0 0 178 5,-0.2 28,-0.0 1,-0.1 -2,-0.0 0.717 53.5 107.8 57.6 15.4 -13.9 8.4 7.0 6 6 A a S > S- 0 0 35 1,-0.3 3,-0.8 4,-0.2 2,-0.2 0.574 73.7-141.7 -98.6 -9.9 -10.5 7.6 8.5 7 7 A G G > S- 0 0 47 1,-0.2 3,-2.3 3,-0.2 -1,-0.3 -0.599 71.5 -7.6 85.8-146.8 -8.5 8.9 5.5 8 8 A R G 3 S+ 0 0 73 1,-0.3 -1,-0.2 -2,-0.2 26,-0.1 0.686 130.7 70.0 -59.9 -12.5 -5.3 7.0 4.4 9 9 A Y G < S+ 0 0 130 -3,-0.8 22,-0.3 1,-0.2 -1,-0.3 0.381 108.3 32.4 -86.9 7.5 -5.8 5.0 7.6 10 10 A S < + 0 0 8 -3,-2.3 -3,-0.2 24,-0.2 -1,-0.2 -0.094 65.1 138.0-156.0 48.1 -8.9 3.3 6.1 11 11 A P + 0 0 62 0, 0.0 2,-0.2 0, 0.0 -3,-0.1 0.402 67.3 67.0 -76.4 3.8 -8.5 2.9 2.4 12 12 A b S S- 0 0 22 20,-0.2 19,-0.0 2,-0.2 17,-0.0 -0.517 75.9-135.2-113.9-174.3 -10.0 -0.6 2.7 13 13 A L S S+ 0 0 145 -2,-0.2 2,-0.1 -9,-0.0 -1,-0.1 0.516 87.9 11.4-117.9 -13.5 -13.4 -2.0 3.6 14 14 A D S S- 0 0 93 2,-0.1 2,-0.4 18,-0.0 -2,-0.2 -0.266 95.2 -72.0-134.8-137.0 -12.3 -4.8 6.0 15 15 A D S S+ 0 0 115 16,-0.2 16,-0.2 -2,-0.1 20,-0.1 -0.994 73.6 67.6-136.5 135.6 -9.1 -5.7 7.7 16 16 A G E S-A 30 0A 19 14,-2.6 14,-3.3 -2,-0.4 2,-0.2 -0.815 83.4 -43.6 145.2 174.0 -5.9 -7.3 6.3 17 17 A P E +A 29 0A 48 0, 0.0 2,-0.3 0, 0.0 12,-0.2 -0.497 60.0 174.1 -72.5 134.9 -2.9 -6.5 4.0 18 18 A N E -A 28 0A 67 10,-3.1 10,-1.5 -2,-0.2 2,-0.3 -0.915 38.0 -87.7-138.3 166.2 -3.8 -4.8 0.8 19 19 A V - 0 0 63 -2,-0.3 2,-0.2 8,-0.2 28,-0.1 -0.564 43.9-128.2 -76.0 133.0 -2.1 -3.2 -2.3 20 20 A N - 0 0 1 -2,-0.3 42,-0.2 26,-0.2 28,-0.1 -0.523 14.0-162.2 -80.2 147.8 -1.2 0.5 -1.7 21 21 A L S S+ 0 0 85 -2,-0.2 43,-3.2 42,-0.1 -1,-0.1 0.357 84.8 23.6-109.8 4.4 -2.2 3.0 -4.4 22 22 A Y S S+ 0 0 123 41,-0.4 43,-0.8 42,-0.2 -2,-0.1 0.519 106.6 60.5-130.0 -73.4 0.2 5.8 -3.3 23 23 A S - 0 0 0 3,-0.1 40,-0.2 1,-0.1 42,-0.2 -0.072 56.5-160.8 -56.1 164.2 3.3 4.8 -1.4 24 24 A c S S+ 0 0 8 42,-0.1 22,-0.4 38,-0.1 -1,-0.1 0.541 85.7 35.0-124.9 -17.2 5.8 2.4 -3.2 25 25 A d S S+ 0 0 9 1,-0.2 15,-1.6 20,-0.2 2,-0.6 0.767 116.1 51.4-106.5 -37.6 7.8 1.0 -0.3 26 26 A S E S- B 0 39A 2 13,-0.3 13,-0.3 19,-0.1 -1,-0.2 -0.872 76.0-159.8-103.3 116.0 5.2 0.8 2.5 27 27 A F E - B 0 38A 1 11,-1.6 11,-0.8 -2,-0.6 2,-0.6 0.017 30.8 -84.2 -79.8-166.4 2.0 -1.0 1.4 28 28 A Y E -AB 18 37A 8 -10,-1.5 -10,-3.1 9,-0.2 2,-0.8 -0.887 32.4-167.5-109.3 120.8 -1.4 -0.7 3.0 29 29 A N E -AB 17 36A 52 7,-1.0 7,-1.1 -2,-0.6 2,-0.4 -0.869 17.9-146.3-103.8 108.3 -2.3 -2.8 6.1 30 30 A b E +AB 16 35A 6 -14,-3.3 -14,-2.6 -2,-0.8 2,-0.3 -0.610 28.9 161.5 -78.9 126.1 -6.1 -2.5 6.7 31 31 A H E > - B 0 34A 82 3,-2.2 3,-0.9 -2,-0.4 -16,-0.2 -0.791 60.0 -71.0-145.4 97.8 -7.0 -2.6 10.4 32 32 A K T 3 S- 0 0 161 -2,-0.3 2,-1.3 1,-0.3 -1,-0.4 -0.194 116.7 -13.5 49.7-138.8 -10.4 -1.3 11.5 33 33 A a T 3 S+ 0 0 56 -3,-0.1 2,-0.3 -22,-0.1 -1,-0.3 -0.163 130.2 79.8 -84.2 47.0 -10.4 2.5 11.1 34 34 A L E < -B 31 0A 76 -2,-1.3 -3,-2.2 -3,-0.9 2,-0.6 -0.931 56.5-166.4-154.5 127.8 -6.6 2.4 10.7 35 35 A A E -B 30 0A 2 -2,-0.3 2,-0.5 -5,-0.2 -5,-0.2 -0.791 12.2-167.4-117.7 91.2 -4.3 1.5 7.8 36 36 A R E -B 29 0A 151 -7,-1.1 -7,-1.0 -2,-0.6 2,-0.1 -0.637 15.5-142.0 -79.1 122.1 -0.7 1.0 9.0 37 37 A L E -B 28 0A 25 -2,-0.5 2,-0.4 -9,-0.2 -9,-0.2 -0.375 6.4-147.4 -79.1 163.1 1.6 0.9 6.1 38 38 A E E -B 27 0A 58 -11,-0.8 -11,-1.6 35,-0.1 2,-0.3 -0.865 4.5-154.0-136.6 104.5 4.6 -1.5 6.0 39 39 A N E -B 26 0A 64 -2,-0.4 -13,-0.3 -13,-0.3 6,-0.1 -0.577 21.4-127.0 -77.7 133.8 7.9 -0.5 4.3 40 40 A e > - 0 0 5 -15,-1.6 3,-0.5 4,-0.9 4,-0.4 -0.272 34.4 -86.7 -74.1 166.9 9.9 -3.4 3.0 41 41 A P T 3 S+ 0 0 92 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.410 110.3 19.3 -73.3 148.8 13.6 -3.8 3.9 42 42 A K T 3 S- 0 0 163 1,-0.2 -2,-0.1 -2,-0.1 0, 0.0 0.947 135.0 -63.2 59.0 47.1 16.2 -2.1 1.7 43 43 A G S < S+ 0 0 43 -3,-0.5 -1,-0.2 1,-0.1 2,-0.2 0.931 92.3 166.2 43.6 52.8 13.6 0.3 0.3 44 44 A L - 0 0 23 -4,-0.4 -4,-0.9 -19,-0.1 2,-0.3 -0.571 35.1-118.6 -95.7 163.0 11.8 -2.7 -1.3 45 45 A H E -C 54 0B 6 9,-2.3 9,-2.4 -2,-0.2 2,-0.4 -0.747 26.1-115.1-100.3 148.1 8.2 -2.6 -2.7 46 46 A Y E -C 53 0B 43 -22,-0.4 2,-1.6 -2,-0.3 7,-0.3 -0.666 21.1-131.5 -83.4 129.7 5.4 -4.8 -1.3 47 47 A N E >>> -C 52 0B 23 5,-2.0 3,-3.1 -2,-0.4 4,-1.3 -0.585 19.6-170.7 -80.0 90.6 4.1 -7.5 -3.7 48 48 A A T 345S+ 0 0 45 -2,-1.6 -1,-0.2 11,-0.3 -29,-0.1 0.769 85.3 63.8 -53.9 -21.3 0.4 -6.9 -3.4 49 49 A Y T 345S+ 0 0 204 1,-0.2 -1,-0.3 10,-0.1 -2,-0.1 0.651 121.1 19.1 -78.8 -12.1 0.0 -10.1 -5.4 50 50 A L T <45S- 0 0 81 -3,-3.1 -2,-0.2 2,-0.1 -1,-0.2 0.260 99.0-120.0-138.3 10.2 1.6 -12.1 -2.6 51 51 A K T <5S+ 0 0 125 -4,-1.3 -3,-0.2 1,-0.2 2,-0.1 0.826 85.1 100.5 53.6 26.6 1.3 -9.8 0.5 52 52 A V E > - 0 0 110 -2,-0.3 4,-2.5 -11,-0.2 3,-1.1 0.036 51.7-109.8 -42.9 160.5 12.4 -4.9 -5.5 56 56 A P T 34>S+ 0 0 64 0, 0.0 5,-0.8 0, 0.0 -1,-0.2 0.594 117.5 63.1 -72.8 -10.2 10.5 -2.1 -7.2 57 57 A S T 345S+ 0 0 97 3,-0.1 -2,-0.1 2,-0.1 0, 0.0 0.608 115.6 27.8 -90.1 -11.2 11.3 -3.7 -10.6 58 58 A K T <45S+ 0 0 125 -3,-1.1 -3,-0.1 -13,-0.0 -1,-0.1 0.702 113.1 59.5-116.7 -37.5 9.4 -6.9 -9.7 59 59 A A T <5S- 0 0 11 -4,-2.5 -11,-0.3 -5,-0.1 -10,-0.1 0.560 101.0-132.4 -71.3 -3.0 6.6 -5.8 -7.3 60 60 A G T 5 - 0 0 43 -5,-0.2 2,-1.0 1,-0.2 -3,-0.1 0.942 16.5-146.6 50.1 87.7 5.4 -3.4 -10.0 61 61 A c < + 0 0 20 -5,-0.8 -1,-0.2 1,-0.2 -37,-0.1 -0.713 37.9 153.3 -88.9 101.4 5.0 -0.1 -8.1 62 62 A T + 0 0 110 -2,-1.0 -1,-0.2 -42,-0.2 2,-0.1 0.196 26.8 131.7-110.8 15.8 2.1 1.7 -9.7 63 63 A S S S- 0 0 1 2,-0.2 -41,-0.4 -40,-0.2 -42,-0.1 -0.445 71.0-117.9 -69.5 138.8 1.1 3.7 -6.6 64 64 A V S S+ 0 0 112 -43,-3.2 2,-1.1 1,-0.2 -42,-0.2 0.851 109.6 64.2 -45.4 -33.8 0.6 7.4 -7.3 65 65 A N + 0 0 35 -43,-0.8 -1,-0.2 1,-0.2 -2,-0.2 -0.740 58.3 162.2 -96.2 95.3 3.5 8.0 -4.9 66 66 A K + 0 0 124 -2,-1.1 2,-2.0 1,-0.2 3,-0.2 0.873 64.3 70.9 -80.2 -36.6 6.6 6.4 -6.6 67 67 A E + 0 0 85 1,-0.2 -1,-0.2 2,-0.1 -44,-0.0 -0.490 56.8 167.2 -80.4 77.5 9.1 8.2 -4.4 68 68 A d > + 0 0 20 -2,-2.0 2,-4.0 1,-0.2 3,-1.0 0.809 56.8 91.1 -62.6 -25.2 8.4 6.3 -1.1 69 69 A H T 3 + 0 0 141 1,-0.2 -1,-0.2 -3,-0.2 3,-0.1 -0.203 57.2 101.1 -67.3 59.9 11.7 7.8 0.3 70 70 A L T 3 S- 0 0 88 -2,-4.0 -1,-0.2 1,-0.1 2,-0.2 0.520 88.1 -2.0-119.5 -12.9 9.6 10.8 1.6 71 71 A W S < S- 0 0 109 -3,-1.0 2,-0.6 0, 0.0 -1,-0.1 -0.790 85.0 -78.2-155.0-161.7 9.3 9.8 5.3 72 72 A K 0 0 172 1,-0.4 -3,-0.1 -2,-0.2 -33,-0.0 -0.750 360.0 360.0-117.6 87.2 10.2 7.1 7.8 73 73 A T 0 0 106 -2,-0.6 -1,-0.4 -5,-0.1 -35,-0.1 0.097 360.0 360.0 37.9 360.0 7.8 4.1 7.5