==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 10-SEP-06 2DYD . COMPND 2 MOLECULE: POLY(A)-BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: TRITICUM AESTIVUM; . AUTHOR N.SIDDIQUI . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6426.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 69.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 42 49.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 112 0, 0.0 2,-0.1 0, 0.0 10,-0.0 0.000 360.0 360.0 360.0 -81.8 25.5 -4.5 16.4 2 2 A P - 0 0 63 0, 0.0 8,-0.1 0, 0.0 5,-0.1 -0.433 360.0-173.9 -71.3 141.3 22.4 -6.8 16.1 3 3 A L S S- 0 0 176 2,-0.3 7,-0.0 -2,-0.1 0, 0.0 0.846 74.6 -1.8 -99.8 -51.2 19.9 -6.8 18.9 4 4 A G S S+ 0 0 68 1,-0.4 3,-0.0 3,-0.1 0, 0.0 0.691 124.9 18.0-105.0 -94.0 17.5 -9.6 18.0 5 5 A S S S- 0 0 82 2,-0.1 4,-0.5 1,-0.1 -1,-0.4 -0.545 71.4-123.4 -84.4 149.7 17.9 -11.5 14.7 6 6 A P S > S+ 0 0 98 0, 0.0 4,-1.4 0, 0.0 5,-0.2 0.971 93.6 53.2 -53.6 -63.9 21.2 -11.5 12.8 7 7 A I T 4 S+ 0 0 129 2,-0.2 2,-3.1 1,-0.2 -2,-0.1 -0.187 113.7 16.4 -70.1 166.1 19.8 -10.2 9.5 8 8 A G T 4 S+ 0 0 25 1,-0.2 7,-0.3 3,-0.1 6,-0.2 -0.333 121.3 60.6 70.5 -65.9 17.8 -7.0 9.2 9 9 A A T 4 S+ 0 0 56 -2,-3.1 -1,-0.2 -4,-0.5 -2,-0.2 0.865 103.9 51.1 -59.8 -37.5 18.9 -5.8 12.6 10 10 A L S < S+ 0 0 118 -4,-1.4 2,-0.4 -5,-0.3 -1,-0.2 0.906 124.7 22.9 -67.1 -42.9 22.5 -5.8 11.5 11 11 A A >> - 0 0 33 -5,-0.2 4,-0.7 1,-0.1 3,-0.6 -0.988 60.3-156.7-131.9 126.4 21.7 -3.8 8.3 12 12 A S H >> S+ 0 0 96 -2,-0.4 4,-1.1 1,-0.2 3,-0.7 0.842 96.9 62.1 -65.9 -34.2 18.7 -1.5 7.8 13 13 A A H 34 S+ 0 0 78 1,-0.2 -1,-0.2 2,-0.2 3,-0.0 0.810 92.7 65.6 -61.8 -30.4 19.0 -1.9 4.0 14 14 A L H <4 S+ 0 0 94 -3,-0.6 -1,-0.2 1,-0.2 -2,-0.2 0.878 102.9 46.1 -59.7 -38.9 18.4 -5.6 4.5 15 15 A A H << S+ 0 0 71 -3,-0.7 2,-3.1 -4,-0.7 -1,-0.2 0.783 89.9 89.1 -74.4 -28.2 14.8 -4.9 5.7 16 16 A N < + 0 0 127 -4,-1.1 -1,-0.2 -8,-0.1 -3,-0.1 -0.346 66.8 174.5 -70.5 66.6 14.3 -2.4 2.8 17 17 A S - 0 0 63 -2,-3.1 5,-0.1 1,-0.2 -2,-0.1 -0.281 42.3 -66.3 -72.5 161.0 13.0 -5.1 0.5 18 18 A P > - 0 0 64 0, 0.0 4,-2.7 0, 0.0 5,-0.3 0.042 47.2-113.2 -43.6 153.6 11.6 -4.3 -3.0 19 19 A P H > S+ 0 0 76 0, 0.0 4,-3.2 0, 0.0 33,-0.1 0.870 118.1 48.6 -60.8 -37.9 8.4 -2.3 -3.1 20 20 A E H > S+ 0 0 137 2,-0.2 4,-1.0 31,-0.2 5,-0.3 0.900 111.3 49.6 -69.0 -41.5 6.5 -5.3 -4.6 21 21 A T H > S+ 0 0 67 1,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.946 120.1 36.1 -63.3 -47.5 7.8 -7.6 -1.9 22 22 A Q H X>S+ 0 0 37 -4,-2.7 4,-4.0 3,-0.2 5,-0.5 0.917 102.2 82.8 -68.7 -44.7 6.9 -5.2 0.8 23 23 A R H X5S+ 0 0 76 -4,-3.2 4,-2.5 -5,-0.3 5,-0.3 0.784 107.7 19.7 -22.6 -86.1 3.8 -4.2 -1.0 24 24 A M H X5S+ 0 0 117 -4,-1.0 4,-2.4 1,-0.2 -1,-0.3 0.845 123.3 63.4 -60.0 -35.3 1.5 -7.0 0.1 25 25 A M H X5S+ 0 0 132 -4,-1.1 4,-1.1 -5,-0.3 -2,-0.2 0.953 112.2 32.4 -57.7 -52.1 3.9 -7.7 3.0 26 26 A L H >X>S+ 0 0 63 -4,-4.0 4,-4.1 1,-0.2 3,-1.1 0.967 120.1 51.9 -69.6 -48.7 3.3 -4.4 4.7 27 27 A G H 3<> - 0 0 125 1,-0.1 4,-2.7 -2,-0.1 3,-0.9 -0.436 59.7-105.4 -71.9 143.2 -13.3 -4.5 1.8 39 39 A H H 3> S+ 0 0 110 3,-0.3 4,-0.9 1,-0.2 5,-0.5 0.722 108.9 86.2 -37.8 -28.9 -10.3 -6.0 -0.1 40 40 A D H 34 S- 0 0 113 1,-0.2 -1,-0.2 2,-0.2 4,-0.2 0.919 122.8 -12.5 -38.9 -73.0 -12.5 -5.6 -3.2 41 41 A Q H <> S+ 0 0 51 -3,-0.9 4,-2.0 2,-0.1 5,-0.2 0.642 137.1 66.8-104.3 -23.0 -11.6 -2.0 -3.9 42 42 A A H X>S+ 0 0 0 -4,-2.7 4,-2.4 1,-0.2 5,-0.6 0.907 98.5 51.9 -64.2 -43.8 -9.9 -1.4 -0.6 43 43 A A H X>S+ 0 0 34 -4,-0.9 5,-0.7 -5,-0.5 4,-0.6 0.821 108.7 53.5 -62.7 -32.3 -7.1 -3.8 -1.4 44 44 A K H >5S+ 0 0 99 -5,-0.5 4,-0.7 3,-0.2 5,-0.4 0.943 116.0 34.1 -70.4 -50.3 -6.5 -2.0 -4.6 45 45 A V H X5S+ 0 0 0 -4,-2.0 4,-0.9 3,-0.2 -2,-0.2 0.948 127.4 34.2 -72.0 -51.2 -6.1 1.5 -3.3 46 46 A T H <5S+ 0 0 0 -4,-2.4 4,-0.2 -5,-0.2 -3,-0.2 0.954 128.4 31.5 -71.0 -54.0 -4.4 0.8 0.1 47 47 A G H ><X S+ 0 0 179 -2,-0.4 4,-1.9 1,-0.2 5,-0.2 0.881 108.2 47.0 -59.0 -39.5 7.3 5.2 -2.2 55 55 A T H > S+ 0 0 66 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.869 115.0 46.7 -70.0 -37.2 5.5 8.2 -0.8 56 56 A E H > S+ 0 0 41 2,-0.2 4,-4.8 3,-0.2 5,-0.5 0.915 109.7 52.0 -72.0 -43.9 2.1 6.6 -1.4 57 57 A V H X S+ 0 0 18 -4,-3.7 4,-1.8 -8,-0.5 -2,-0.2 0.937 115.8 42.0 -57.4 -46.4 3.1 3.3 0.1 58 58 A L H < S+ 0 0 104 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.920 123.3 38.9 -64.8 -46.6 4.3 5.1 3.2 59 59 A H H >X S+ 0 0 83 -4,-2.3 4,-3.1 -5,-0.2 3,-1.0 0.904 118.0 46.1 -71.1 -48.3 1.4 7.4 3.3 60 60 A L H 3< S+ 0 0 2 -4,-4.8 -3,-0.2 1,-0.3 -2,-0.2 0.917 114.9 44.6 -66.7 -44.6 -1.4 5.0 2.2 61 61 A L T 3< S+ 0 0 1 -4,-1.8 -1,-0.3 -5,-0.5 -2,-0.1 -0.087 128.5 28.6 -92.1 36.4 -0.5 2.1 4.6 62 62 A E T <4 S+ 0 0 107 -3,-1.0 -2,-0.2 1,-0.5 -3,-0.2 0.350 113.7 51.0-155.6 -44.5 0.0 4.5 7.5 63 63 A S < - 0 0 40 -4,-3.1 -1,-0.5 -5,-0.2 4,-0.4 -0.824 59.2-146.3-111.1 150.6 -2.2 7.6 7.2 64 64 A P S >> S+ 0 0 98 0, 0.0 3,-1.8 0, 0.0 4,-1.0 0.912 100.2 58.1 -77.2 -45.2 -5.9 7.9 6.5 65 65 A D H 3> S+ 0 0 98 1,-0.3 4,-0.9 2,-0.2 -5,-0.1 0.789 97.7 65.8 -55.0 -27.3 -5.8 11.1 4.5 66 66 A A H 3> S+ 0 0 5 -7,-0.4 4,-1.4 1,-0.2 3,-0.3 0.840 94.4 58.3 -63.5 -34.9 -3.5 9.2 2.2 67 67 A L H <> S+ 0 0 17 -3,-1.8 4,-3.4 -4,-0.4 5,-0.3 0.907 97.3 58.5 -62.6 -45.4 -6.4 6.9 1.3 68 68 A K H X S+ 0 0 156 -4,-1.0 4,-1.4 1,-0.2 -1,-0.2 0.832 105.0 53.6 -54.5 -35.4 -8.6 9.7 0.0 69 69 A A H X S+ 0 0 56 -4,-0.9 4,-1.0 -3,-0.3 -1,-0.2 0.944 119.8 27.9 -66.3 -52.8 -5.9 10.6 -2.5 70 70 A K H X S+ 0 0 39 -4,-1.4 4,-4.2 2,-0.2 5,-0.4 0.844 116.2 60.8 -79.6 -37.5 -5.5 7.1 -4.1 71 71 A V H X S+ 0 0 18 -4,-3.4 4,-2.8 -5,-0.2 5,-0.3 0.925 104.3 49.1 -57.2 -47.2 -9.0 5.9 -3.5 72 72 A A H X S+ 0 0 57 -4,-1.4 4,-0.5 -5,-0.3 -1,-0.2 0.922 120.9 36.0 -58.8 -46.2 -10.5 8.7 -5.5 73 73 A E H X S+ 0 0 136 -4,-1.0 4,-1.0 -5,-0.2 -2,-0.2 0.937 124.6 40.4 -73.0 -50.1 -8.1 8.0 -8.4 74 74 A A H >X S+ 0 0 22 -4,-4.2 4,-1.8 1,-0.2 3,-0.9 0.952 113.4 51.9 -65.1 -52.1 -8.0 4.2 -8.1 75 75 A M H 3X>S+ 0 0 38 -4,-2.8 4,-1.0 -5,-0.4 5,-0.9 0.731 103.5 63.5 -58.3 -21.1 -11.7 3.7 -7.3 76 76 A E H 3<5S+ 0 0 107 -4,-0.5 4,-0.3 -5,-0.3 -1,-0.3 0.888 105.1 42.3 -71.0 -40.4 -12.4 5.8 -10.4 77 77 A V H <<5S+ 0 0 74 -4,-1.0 -2,-0.2 -3,-0.9 -1,-0.2 0.846 126.7 32.0 -75.2 -35.8 -10.8 3.2 -12.8 78 78 A L H <5S+ 0 0 65 -4,-1.8 -3,-0.2 1,-0.1 -2,-0.2 0.958 128.6 32.3 -84.7 -68.5 -12.3 0.2 -11.0 79 79 A R T <5S+ 0 0 183 -4,-1.0 2,-0.2 -5,-0.2 -3,-0.2 0.822 128.2 43.5 -59.3 -32.4 -15.7 1.2 -9.7 80 80 A S S