==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 20-DEC-06 2E5E . COMPND 2 MOLECULE: ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.MATSUMOTO,T.YOSHIDA,I.YASUMATSU,H.YAMAMOTO,Y.KOBAYASHI, . 101 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7843.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 45.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 23.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 21 A A 0 0 130 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 104.6 5.1 -8.8 -13.7 2 22 A M - 0 0 154 2,-0.0 2,-0.3 91,-0.0 89,-0.1 -0.933 360.0-169.6-156.6 176.9 6.4 -5.3 -13.1 3 23 A A - 0 0 45 -2,-0.3 2,-0.3 91,-0.1 90,-0.2 -0.877 24.6-117.0-176.0 142.1 7.3 -2.8 -10.4 4 24 A Q E -a 93 0A 119 88,-1.4 90,-2.3 -2,-0.3 2,-0.8 -0.691 28.3-126.2 -89.2 137.2 8.3 0.8 -10.0 5 25 A N E +a 94 0A 142 -2,-0.3 2,-0.4 88,-0.1 90,-0.1 -0.737 37.6 169.0 -86.2 111.1 11.7 1.7 -8.6 6 26 A I E -a 95 0A 59 88,-1.9 90,-1.4 -2,-0.8 2,-0.3 -0.986 22.5-147.2-128.1 125.8 11.4 4.1 -5.6 7 27 A T E +a 96 0A 128 -2,-0.4 2,-0.3 88,-0.2 90,-0.2 -0.707 23.8 170.1 -92.0 140.2 14.1 5.0 -3.2 8 28 A A - 0 0 7 88,-2.1 90,-0.4 -2,-0.3 2,-0.4 -0.954 28.3-121.8-144.9 162.7 13.4 5.7 0.4 9 29 A R > - 0 0 125 -2,-0.3 3,-2.1 88,-0.3 60,-0.2 -0.891 34.6-105.1-111.7 138.3 15.2 6.3 3.7 10 30 A I T 3 S+ 0 0 56 -2,-0.4 60,-0.3 1,-0.3 59,-0.1 -0.342 106.0 10.0 -60.2 131.5 14.7 4.2 6.9 11 31 A G T 3 S+ 0 0 46 58,-1.9 -1,-0.3 1,-0.3 59,-0.2 0.508 100.3 127.4 77.5 3.4 12.6 6.0 9.5 12 32 A E E < -D 69 0B 94 -3,-2.1 57,-2.3 57,-0.9 -1,-0.3 -0.793 64.2-113.9 -97.2 134.9 11.7 8.7 7.0 13 33 A P E - 0 0 58 0, 0.0 2,-0.4 0, 0.0 -4,-0.1 -0.360 35.4-172.2 -65.7 141.3 8.0 9.6 6.4 14 34 A L E -D 66 0B 53 52,-1.1 52,-2.2 -2,-0.1 2,-0.4 -1.000 10.1-163.5-140.4 138.5 6.6 8.8 2.9 15 35 A V E +D 65 0B 88 -2,-0.4 2,-0.3 50,-0.2 50,-0.2 -0.971 13.2 169.8-124.9 136.5 3.3 9.6 1.2 16 36 A L E -D 64 0B 85 48,-2.9 48,-2.5 -2,-0.4 2,-0.5 -0.986 27.4-129.7-143.8 152.5 1.8 8.0 -1.9 17 37 A K E -D 63 0B 141 -2,-0.3 2,-0.5 46,-0.3 46,-0.2 -0.906 17.4-176.6-108.0 124.7 -1.5 8.0 -3.7 18 38 A a - 0 0 22 44,-1.8 -2,-0.0 -2,-0.5 73,-0.0 -0.716 14.1-179.1-120.7 80.0 -3.2 4.7 -4.6 19 39 A K + 0 0 183 -2,-0.5 43,-0.1 1,-0.2 70,-0.0 0.080 31.0 121.0 -65.3-176.2 -6.3 5.5 -6.6 20 40 A G + 0 0 27 1,-0.4 -1,-0.2 2,-0.0 61,-0.1 -0.084 35.5 115.4 148.8 -41.3 -8.7 2.9 -8.0 21 41 A A - 0 0 77 1,-0.1 -1,-0.4 6,-0.1 8,-0.0 -0.445 61.3-135.6 -62.6 116.1 -12.1 3.6 -6.5 22 42 A P - 0 0 56 0, 0.0 5,-0.1 0, 0.0 -1,-0.1 0.298 35.4 -82.5 -56.2-166.7 -14.4 4.5 -9.4 23 43 A K S S+ 0 0 215 3,-0.0 -2,-0.1 0, 0.0 0, 0.0 0.734 103.6 96.3 -75.2 -23.0 -16.9 7.4 -9.3 24 44 A K S S- 0 0 112 1,-0.1 3,-0.3 2,-0.0 0, 0.0 -0.104 93.0 -69.5 -62.4 165.4 -19.4 5.3 -7.5 25 45 A P S S- 0 0 100 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 0.082 78.8 -57.7 -49.8 167.7 -19.7 5.4 -3.6 26 46 A P - 0 0 118 0, 0.0 3,-0.1 0, 0.0 2,-0.1 -0.332 69.3-170.4 -55.3 105.5 -16.8 4.0 -1.4 27 47 A Q - 0 0 44 -2,-0.5 56,-0.1 -3,-0.3 -6,-0.1 -0.215 31.1 -65.8 -89.7-176.0 -16.6 0.4 -2.6 28 48 A R E -B 82 0A 171 54,-0.7 54,-0.7 17,-0.1 2,-0.3 -0.184 50.4-170.5 -67.7 163.3 -14.6 -2.5 -1.1 29 49 A L E -B 81 0A 74 15,-0.4 2,-0.4 52,-0.2 52,-0.2 -0.975 10.7-163.2-158.7 142.7 -10.8 -2.6 -1.0 30 50 A E E -B 80 0A 51 50,-2.1 50,-0.8 -2,-0.3 2,-0.5 -0.994 11.8-144.1-133.3 136.2 -8.0 -5.0 -0.2 31 51 A W E +B 79 0A 12 11,-0.5 2,-0.3 -2,-0.4 48,-0.2 -0.845 25.0 167.8-101.6 131.8 -4.4 -4.4 0.5 32 52 A K E +B 78 0A 91 46,-1.7 46,-1.2 -2,-0.5 2,-0.3 -1.000 7.3 176.2-144.9 141.6 -1.7 -6.9 -0.7 33 53 A L E -B 77 0A 15 -2,-0.3 2,-0.5 44,-0.2 44,-0.2 -0.998 20.9-138.6-146.8 144.3 2.1 -6.8 -0.9 34 54 A N E +B 76 0A 121 42,-1.0 42,-1.4 -2,-0.3 2,-0.3 -0.902 38.3 141.2-107.8 125.1 4.8 -9.3 -1.9 35 55 A T - 0 0 39 -2,-0.5 40,-0.1 40,-0.2 -2,-0.0 -0.894 61.3 -91.7-148.7 177.7 8.0 -9.4 0.1 36 56 A G S S- 0 0 83 -2,-0.3 -1,-0.1 1,-0.1 39,-0.0 0.956 121.3 -1.7 -60.4 -53.5 10.6 -11.8 1.5 37 57 A R S S- 0 0 223 -3,-0.1 -1,-0.1 0, 0.0 -2,-0.0 0.697 92.3-145.7-108.5 -32.1 8.9 -12.3 4.8 38 58 A T + 0 0 44 1,-0.1 35,-0.1 34,-0.1 37,-0.1 0.893 34.8 158.2 62.1 104.9 5.9 -10.0 4.5 39 59 A E + 0 0 171 33,-0.4 -1,-0.1 3,-0.0 33,-0.1 0.133 66.0 58.9-140.9 16.7 5.0 -8.3 7.7 40 60 A A + 0 0 13 -7,-0.1 2,-0.3 32,-0.1 15,-0.1 0.507 66.5 120.4-121.9 -16.0 3.1 -5.3 6.5 41 61 A W + 0 0 130 -8,-0.1 2,-0.3 2,-0.0 -9,-0.1 -0.370 39.9 167.6 -57.2 116.0 0.3 -6.9 4.5 42 62 A K - 0 0 18 -2,-0.3 2,-0.7 10,-0.1 -11,-0.5 -0.924 38.8-113.1-132.5 156.9 -3.0 -5.8 6.2 43 63 A V - 0 0 98 -2,-0.3 2,-0.4 -13,-0.1 -13,-0.1 -0.808 30.8-156.8 -94.4 113.6 -6.7 -5.8 5.2 44 64 A L - 0 0 15 -2,-0.7 -15,-0.4 5,-0.1 5,-0.1 -0.732 11.5-174.6 -92.3 136.0 -8.1 -2.4 4.7 45 65 A S B > -F 48 0C 70 3,-0.6 3,-0.6 -2,-0.4 -17,-0.1 -0.954 34.9-127.3-130.8 149.4 -11.9 -1.8 5.0 46 66 A P T 3 S+ 0 0 90 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 0.616 110.4 33.3 -68.1 -11.8 -14.1 1.3 4.4 47 67 A Q T 3 S+ 0 0 188 1,-0.0 2,-0.2 2,-0.0 -3,-0.0 -0.551 116.4 27.3-146.1 75.6 -15.4 0.9 7.9 48 68 A G B < -F 45 0C 56 -3,-0.6 -3,-0.6 -2,-0.1 2,-0.3 -0.778 58.3-132.6 151.8 164.5 -12.8 -0.4 10.4 49 69 A G - 0 0 56 -2,-0.2 -5,-0.1 -5,-0.1 -6,-0.0 -0.929 12.4-172.9-142.6 166.1 -9.1 -0.6 11.2 50 70 A G - 0 0 33 -2,-0.3 4,-0.4 -8,-0.0 3,-0.1 -0.424 51.7 -60.1-135.0-150.5 -6.5 -3.1 12.2 51 71 A P S >> S+ 0 0 106 0, 0.0 3,-1.9 0, 0.0 4,-0.7 0.929 127.5 55.1 -69.5 -47.3 -2.8 -3.3 13.4 52 72 A W H 3> S+ 0 0 10 1,-0.3 4,-3.0 2,-0.2 3,-0.4 0.731 90.8 78.6 -59.3 -20.4 -1.3 -1.7 10.2 53 73 A D H 34 S+ 0 0 52 1,-0.3 -1,-0.3 2,-0.2 -9,-0.0 0.841 94.9 46.5 -57.4 -33.8 -3.7 1.2 10.8 54 74 A S H <4 S+ 0 0 112 -3,-1.9 -1,-0.3 -4,-0.4 -2,-0.2 0.740 114.1 47.9 -80.2 -24.1 -1.2 2.4 13.5 55 75 A V H < S- 0 0 68 -4,-0.7 13,-0.4 -3,-0.4 2,-0.3 0.807 131.5 -4.0 -84.4 -32.5 1.7 1.9 11.1 56 76 A A < - 0 0 2 -4,-3.0 -1,-0.3 10,-0.2 2,-0.3 -0.963 63.6-158.0-162.5 142.9 0.1 3.6 8.2 57 77 A R B -E 65 0B 156 8,-1.4 8,-1.9 -2,-0.3 2,-0.5 -0.801 19.2-120.6-122.3 165.0 -3.2 5.3 7.4 58 78 A V - 0 0 65 -2,-0.3 6,-0.2 6,-0.2 -41,-0.1 -0.918 24.9-129.5-110.6 128.1 -5.2 6.1 4.2 59 79 A L >> - 0 0 69 -2,-0.5 3,-3.4 4,-0.1 4,-0.8 -0.372 28.3-108.4 -72.1 151.0 -6.1 9.7 3.3 60 80 A P T 34 S+ 0 0 139 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.748 121.7 60.8 -49.9 -25.3 -9.8 10.5 2.4 61 81 A N T 34 S- 0 0 99 -42,-0.0 -2,-0.1 1,-0.0 -3,-0.0 0.365 129.0 -97.7 -85.2 5.7 -8.4 11.0 -1.2 62 82 A G T <4 S+ 0 0 26 -3,-3.4 -44,-1.8 1,-0.1 2,-0.1 0.889 80.2 135.6 80.4 41.7 -7.3 7.4 -1.2 63 83 A S E < -D 17 0B 3 -4,-0.8 2,-0.3 -46,-0.2 -46,-0.3 -0.367 46.0-131.3-108.1-171.2 -3.6 8.0 -0.3 64 84 A L E -D 16 0B 22 -48,-2.5 -48,-2.9 -6,-0.2 2,-0.4 -0.948 18.0-178.7-150.6 125.7 -1.1 6.5 2.0 65 85 A F E -DE 15 57B 88 -8,-1.9 -8,-1.4 -2,-0.3 -50,-0.2 -0.987 8.6-160.8-128.9 134.5 1.2 8.1 4.6 66 86 A L E -D 14 0B 8 -52,-2.2 -52,-1.1 -2,-0.4 3,-0.4 -0.951 17.8-143.6-116.9 128.0 3.7 6.4 6.9 67 87 A P E S- 0 0 79 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.844 93.3 -6.0 -54.5 -34.8 5.1 8.0 10.1 68 88 A A E - 0 0 45 -13,-0.4 2,-0.6 -56,-0.2 -56,-0.1 -0.673 69.0-143.8-167.5 105.5 8.5 6.4 9.3 69 89 A V E +D 12 0B 4 -57,-2.3 -58,-1.9 -3,-0.4 -57,-0.9 -0.608 34.2 167.3 -75.6 116.8 9.3 3.9 6.6 70 90 A G > - 0 0 12 -2,-0.6 4,-0.6 -60,-0.3 3,-0.4 -0.278 54.3 -71.0-112.9-159.7 11.8 1.4 7.8 71 91 A I T >4 S+ 0 0 83 1,-0.2 3,-0.7 2,-0.2 26,-0.1 0.835 129.1 58.8 -65.8 -33.1 13.2 -2.0 6.8 72 92 A Q T 34 S+ 0 0 139 1,-0.2 -33,-0.4 -33,-0.1 -1,-0.2 0.819 102.2 54.1 -65.6 -29.9 9.9 -3.6 7.6 73 93 A D T 34 S+ 0 0 8 -3,-0.4 -1,-0.2 -5,-0.1 -2,-0.2 0.674 89.7 106.5 -77.3 -17.7 8.2 -1.3 5.1 74 94 A E << + 0 0 21 -3,-0.7 2,-0.3 -4,-0.6 22,-0.2 0.161 51.4 59.5 -50.9 178.2 10.7 -2.4 2.4 75 95 A G E S- C 0 95A 5 20,-1.5 20,-3.1 -40,-0.1 2,-0.4 -0.692 96.6 -43.9 99.8-152.8 9.6 -4.8 -0.4 76 96 A I E -BC 34 94A 35 -42,-1.4 -42,-1.0 -2,-0.3 2,-0.3 -0.982 47.0-151.2-126.2 131.3 6.9 -4.2 -3.0 77 97 A F E -BC 33 93A 26 16,-2.4 16,-2.8 -2,-0.4 2,-0.3 -0.698 12.5-170.7 -99.3 151.1 3.4 -2.7 -2.3 78 98 A R E -BC 32 92A 81 -46,-1.2 -46,-1.7 -2,-0.3 2,-0.3 -1.000 10.6-146.6-144.2 141.9 0.3 -3.5 -4.3 79 99 A a E +B 31 0A 7 12,-1.1 12,-0.4 -2,-0.3 2,-0.3 -0.754 19.5 172.9-106.4 153.9 -3.2 -2.1 -4.5 80 100 A Q E -B 30 0A 25 -50,-0.8 -50,-2.1 -2,-0.3 2,-0.3 -0.988 11.6-162.6-159.0 150.1 -6.5 -4.0 -5.2 81 101 A A E -B 29 0A 23 -2,-0.3 2,-0.4 -52,-0.2 -52,-0.2 -0.916 10.4-144.8-133.7 160.1 -10.2 -3.5 -5.2 82 102 A M E +B 28 0A 83 -54,-0.7 -54,-0.7 -2,-0.3 6,-0.1 -0.945 20.7 178.0-132.4 112.8 -13.3 -5.7 -5.3 83 103 A N - 0 0 32 -2,-0.4 -54,-0.0 4,-0.3 5,-0.0 -0.284 49.6 -87.7 -99.2-172.7 -16.5 -4.7 -7.1 84 104 A R S S+ 0 0 220 1,-0.2 -1,-0.0 2,-0.1 -2,-0.0 0.819 132.2 36.8 -66.2 -30.9 -19.8 -6.4 -7.6 85 105 A N S S- 0 0 166 2,-0.0 -1,-0.2 0, 0.0 -3,-0.0 0.675 127.5 -95.9 -93.5 -22.2 -18.4 -8.2 -10.7 86 106 A G + 0 0 41 1,-0.2 2,-0.5 0, 0.0 -2,-0.1 0.785 56.8 173.5 108.1 43.9 -14.9 -8.7 -9.2 87 107 A K - 0 0 147 -7,-0.0 2,-0.3 2,-0.0 -4,-0.3 -0.726 5.7-178.1 -87.2 126.6 -12.9 -5.8 -10.6 88 108 A E - 0 0 122 -2,-0.5 2,-0.5 -6,-0.1 -6,-0.1 -0.932 22.9-127.6-125.7 148.8 -9.4 -5.5 -9.2 89 109 A T - 0 0 39 -2,-0.3 2,-0.5 2,-0.1 -10,-0.0 -0.819 17.8-148.8 -98.5 130.2 -6.6 -2.9 -9.7 90 110 A K + 0 0 117 -2,-0.5 2,-0.2 -10,-0.1 -10,-0.1 -0.863 37.4 132.1-101.8 123.5 -3.2 -4.1 -10.7 91 111 A S - 0 0 42 -2,-0.5 -12,-1.1 -12,-0.4 2,-0.5 -0.802 28.0-168.4-171.1 124.9 -0.2 -2.1 -9.6 92 112 A N E - C 0 78A 36 -2,-0.2 -88,-1.4 -14,-0.2 2,-0.5 -0.977 4.6-166.2-124.2 126.0 3.1 -2.9 -7.9 93 113 A Y E -aC 4 77A 51 -16,-2.8 -16,-2.4 -2,-0.5 2,-0.6 -0.942 14.5-141.5-114.3 124.3 5.5 -0.4 -6.4 94 114 A R E -aC 5 76A 88 -90,-2.3 -88,-1.9 -2,-0.5 2,-0.4 -0.727 23.5-177.1 -86.3 120.5 9.1 -1.3 -5.5 95 115 A V E +aC 6 75A 9 -20,-3.1 -20,-1.5 -2,-0.6 2,-0.3 -0.967 5.3 174.0-122.8 134.0 10.3 0.4 -2.3 96 116 A R E -a 7 0A 101 -90,-1.4 -88,-2.1 -2,-0.4 2,-0.2 -0.991 21.3-133.6-139.3 145.2 13.7 0.1 -0.7 97 117 A V - 0 0 5 -2,-0.3 -88,-0.3 -90,-0.2 -27,-0.1 -0.561 25.6-112.4 -95.3 161.1 15.4 1.8 2.3 98 118 A Y S S+ 0 0 175 -90,-0.4 2,-0.4 -2,-0.2 -1,-0.1 0.982 102.5 40.2 -53.0 -78.0 18.9 3.3 2.5 99 119 A Q S S- 0 0 147 -3,-0.1 -1,-0.1 -89,-0.0 -2,-0.1 -0.641 77.8-173.1 -79.9 125.7 20.6 0.9 4.8 100 120 A I 0 0 80 -2,-0.4 -2,-0.0 1,-0.2 -4,-0.0 -0.753 360.0 360.0-116.3 163.0 19.7 -2.7 4.2 101 121 A P 0 0 178 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 0.007 360.0 360.0 -69.2 360.0 20.6 -6.0 6.1