==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-FEB-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 14-MAR-12 4E5R . COMPND 2 MOLECULE: MGC78846 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; . AUTHOR F.GUO,R.SENTURIA,A.LAGANOWSKY,I.BARR,B.D.SCHEIDEMANTLE . 56 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4859.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 23 41.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 17.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 300 A P 0 0 159 0, 0.0 3,-0.1 0, 0.0 49,-0.0 0.000 360.0 360.0 360.0 145.5 16.2 2.2 6.7 2 301 A P - 0 0 114 0, 0.0 49,-0.2 0, 0.0 2,-0.2 -0.249 360.0 -85.7 -69.4 158.7 17.7 3.7 3.5 3 302 A T - 0 0 89 47,-0.1 0, 0.0 1,-0.1 0, 0.0 -0.453 47.5-119.2 -58.7 130.0 20.6 2.1 1.7 4 303 A E - 0 0 87 -2,-0.2 -1,-0.1 1,-0.1 0, 0.0 -0.539 31.4-109.6 -68.8 138.7 23.9 3.4 3.2 5 304 A P - 0 0 94 0, 0.0 32,-0.3 0, 0.0 -1,-0.1 -0.260 37.9 -98.9 -62.5 157.2 26.1 5.3 0.7 6 305 A L - 0 0 39 4,-0.1 30,-0.1 1,-0.1 3,-0.1 -0.453 42.0-102.9 -70.1 152.3 29.3 3.6 -0.5 7 306 A P > - 0 0 29 0, 0.0 3,-1.5 0, 0.0 -1,-0.1 -0.260 57.6 -69.1 -67.9 166.4 32.5 4.7 1.2 8 307 A D T 3 S+ 0 0 153 1,-0.2 3,-0.1 16,-0.0 0, 0.0 -0.260 119.7 22.5 -58.5 140.4 34.8 7.0 -0.7 9 308 A G T 3 S+ 0 0 31 1,-0.3 16,-1.8 -3,-0.1 17,-0.3 0.350 98.7 112.1 87.6 -5.6 36.5 5.6 -3.8 10 309 A W E < -A 24 0A 64 -3,-1.5 2,-0.3 14,-0.2 -1,-0.3 -0.743 41.8-174.0-101.3 150.0 34.0 2.8 -4.3 11 310 A I E -A 23 0A 88 12,-2.2 12,-2.7 -2,-0.3 2,-0.5 -1.000 18.3-135.8-140.6 141.4 31.4 2.4 -7.2 12 311 A M E +A 22 0A 69 -2,-0.3 2,-0.2 10,-0.2 10,-0.2 -0.833 33.8 157.0 -93.9 127.3 28.7 -0.2 -7.7 13 312 A T E -A 21 0A 81 8,-2.6 8,-2.5 -2,-0.5 2,-0.5 -0.761 39.8-101.3-131.1-173.6 28.2 -1.7 -11.1 14 313 A F E -A 20 0A 127 6,-0.3 2,-0.1 -2,-0.2 -2,-0.0 -0.954 24.6-140.5-118.4 128.6 26.7 -4.9 -12.5 15 314 A H > - 0 0 89 4,-2.8 3,-2.7 -2,-0.5 4,-0.1 -0.453 32.2-107.1 -76.8 154.6 28.6 -8.0 -13.5 16 315 A N T 3 S+ 0 0 169 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.731 117.3 70.0 -55.9 -22.1 27.6 -9.9 -16.6 17 316 A S T 3 S- 0 0 73 2,-0.2 -1,-0.3 1,-0.1 -3,-0.0 0.628 118.8-109.3 -69.2 -12.8 26.2 -12.6 -14.3 18 317 A G S < S+ 0 0 51 -3,-2.7 -2,-0.1 1,-0.4 -1,-0.1 0.375 83.1 117.6 96.9 -3.4 23.5 -10.2 -13.3 19 318 A L - 0 0 98 -4,-0.1 -4,-2.8 1,-0.1 -1,-0.4 -0.728 68.6-110.5 -95.9 147.2 24.9 -9.6 -9.8 20 319 A P E -A 14 0A 33 0, 0.0 2,-0.3 0, 0.0 -6,-0.3 -0.441 32.0-166.0 -69.5 148.4 26.1 -6.3 -8.4 21 320 A V E -A 13 0A 14 -8,-2.5 -8,-2.6 -2,-0.1 2,-0.5 -0.979 11.6-140.9-135.0 151.0 29.8 -5.9 -7.8 22 321 A Y E -AB 12 31A 18 9,-2.8 9,-2.2 -2,-0.3 2,-0.4 -0.953 17.5-166.3-120.9 122.0 31.6 -3.2 -5.9 23 322 A L E -AB 11 30A 36 -12,-2.7 -12,-2.2 -2,-0.5 2,-0.8 -0.913 20.0-152.1-115.1 130.4 34.9 -1.8 -7.1 24 323 A H E >> -AB 10 29A 37 5,-3.0 5,-1.3 -2,-0.4 4,-1.3 -0.907 23.4-156.7 -95.0 106.8 37.4 0.4 -5.3 25 324 A R T 45S+ 0 0 150 -16,-1.8 3,-0.3 -2,-0.8 -1,-0.2 0.867 80.9 48.6 -59.5 -46.5 38.7 2.1 -8.4 26 325 A E T 45S+ 0 0 159 -17,-0.3 -1,-0.2 1,-0.2 -16,-0.1 0.841 121.4 33.7 -68.3 -37.0 42.2 3.1 -7.2 27 326 A T T 45S- 0 0 87 -3,-0.3 -1,-0.2 2,-0.1 -2,-0.2 0.523 100.7-130.5 -93.0 -5.2 43.2 -0.2 -5.7 28 327 A R T <5 + 0 0 195 -4,-1.3 2,-0.4 -3,-0.3 -3,-0.2 0.855 55.1 152.2 55.0 38.7 41.3 -2.3 -8.3 29 328 A V E < -B 24 0A 71 -5,-1.3 -5,-3.0 2,-0.0 2,-0.4 -0.838 26.8-163.2-103.5 134.6 39.8 -4.3 -5.5 30 329 A V E -B 23 0A 78 -2,-0.4 2,-0.3 -7,-0.2 -7,-0.2 -0.915 10.9-179.0-118.2 143.3 36.4 -5.9 -5.9 31 330 A T E -B 22 0A 50 -9,-2.2 -9,-2.8 -2,-0.4 -2,-0.0 -0.987 23.8-146.5-133.1 151.3 33.8 -7.3 -3.5 32 331 A W S S+ 0 0 125 -2,-0.3 2,-0.4 -11,-0.2 -9,-0.1 0.350 84.0 67.8 -96.5 5.4 30.5 -8.9 -4.2 33 332 A S S S- 0 0 52 -11,-0.1 19,-0.1 21,-0.0 -11,-0.1 -0.980 100.7 -95.3-122.4 140.3 28.8 -7.6 -1.0 34 333 A R - 0 0 38 17,-0.5 -2,-0.1 -2,-0.4 2,-0.1 -0.308 42.2-137.6 -60.0 117.7 28.1 -3.9 -0.5 35 334 A P - 0 0 20 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.372 23.7-172.7 -72.9 155.5 31.0 -2.3 1.4 36 335 A Y - 0 0 70 -30,-0.1 2,-0.6 16,-0.1 -30,-0.1 -0.978 30.6-100.8-146.5 159.7 30.3 0.2 4.2 37 336 A F - 0 0 155 -32,-0.3 -33,-0.0 -2,-0.3 0, 0.0 -0.707 28.7-176.6 -83.1 119.5 32.1 2.6 6.6 38 337 A L > + 0 0 59 -2,-0.6 3,-1.6 1,-0.2 2,-0.2 0.864 18.0 171.1 -83.5 -39.5 32.4 1.1 10.0 39 338 A G T 3 - 0 0 39 1,-0.3 -1,-0.2 2,-0.0 0, 0.0 -0.438 69.9 -13.4 66.0-132.0 34.1 4.1 11.6 40 339 A T T 3 S+ 0 0 156 -2,-0.2 -1,-0.3 2,-0.1 -2,-0.0 0.384 106.7 120.5 -85.3 4.6 34.4 3.8 15.4 41 340 A G S < S- 0 0 33 -3,-1.6 2,-0.6 1,-0.1 -3,-0.1 -0.236 75.6 -98.0 -65.8 158.1 32.0 0.8 15.4 42 341 A S > - 0 0 48 1,-0.2 4,-2.8 2,-0.0 -1,-0.1 -0.696 23.8-148.1 -82.8 120.4 33.1 -2.5 16.8 43 342 A I T 4 S+ 0 0 127 -2,-0.6 -1,-0.2 1,-0.2 -2,-0.0 0.887 97.8 36.8 -55.8 -40.2 34.1 -4.9 14.0 44 343 A R T 4 S+ 0 0 211 1,-0.1 -1,-0.2 -3,-0.1 -2,-0.0 0.792 127.6 31.7 -82.8 -28.4 33.0 -7.9 16.0 45 344 A K T 4 S+ 0 0 159 -3,-0.1 -2,-0.2 2,-0.1 -1,-0.1 0.625 86.9 107.1-111.6 -16.9 29.9 -6.5 17.7 46 345 A H < - 0 0 47 -4,-2.8 -8,-0.0 1,-0.1 -5,-0.0 -0.183 69.8-117.3 -62.8 155.2 28.3 -3.9 15.4 47 346 A D - 0 0 152 1,-0.0 -1,-0.1 0, 0.0 3,-0.1 -0.861 33.1-129.0 -91.0 121.6 25.0 -4.5 13.5 48 347 A P - 0 0 51 0, 0.0 5,-0.1 0, 0.0 2,-0.0 -0.336 28.3 -97.3 -66.9 150.8 25.7 -4.3 9.8 49 348 A P >> - 0 0 30 0, 0.0 3,-1.8 0, 0.0 4,-0.6 -0.393 34.6-116.1 -64.7 149.8 23.5 -2.1 7.6 50 349 A I G >4 S+ 0 0 111 1,-0.3 3,-1.2 2,-0.2 -47,-0.1 0.874 112.7 58.6 -58.7 -38.9 20.7 -4.0 5.9 51 350 A S G 34 S+ 0 0 37 1,-0.2 -17,-0.5 -49,-0.2 -1,-0.3 0.580 107.8 48.7 -68.5 -6.7 22.0 -3.3 2.4 52 351 A S G <4 S+ 0 0 9 -3,-1.8 -1,-0.2 -19,-0.1 -2,-0.2 0.495 80.4 110.8-113.0 -5.5 25.4 -5.0 3.3 53 352 A I << - 0 0 76 -3,-1.2 -19,-0.1 -4,-0.6 3,-0.1 -0.496 60.3-140.2 -73.0 133.0 24.2 -8.2 4.9 54 353 A P - 0 0 82 0, 0.0 -2,-0.1 0, 0.0 -1,-0.1 -0.312 47.4 -54.0 -83.5 178.3 25.0 -11.3 2.7 55 354 A C 0 0 121 -2,-0.1 0, 0.0 1,-0.0 0, 0.0 -0.257 360.0 360.0 -53.8 146.2 22.6 -14.2 2.3 56 355 A L 0 0 219 -3,-0.1 -1,-0.0 0, 0.0 0, 0.0 0.672 360.0 360.0 99.0 360.0 21.6 -15.6 5.7