==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER EUKARYOTIC TRANSCRIPTIONAL REGULATION 04-OCT-00 1E91 . COMPND 2 MOLECULE: PAIRED AMPHIPATHIC HELIX PROTEIN SIN3B; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR C.A.E.M.SPRONK,M.TESSARI,A.M.KAAN,J.F.A.JANSEN,M.VERMEULEN, . 98 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7566.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 74 75.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 55 56.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E 0 0 185 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 46.2 -1.5 18.3 -7.8 2 2 A S - 0 0 116 1,-0.2 0, 0.0 5,-0.0 0, 0.0 0.868 360.0 -20.3 -59.4 -38.0 -3.4 20.3 -5.2 3 3 A D S S+ 0 0 104 4,-0.0 -1,-0.2 5,-0.0 5,-0.2 -0.046 85.1 178.0-167.6 46.7 -6.2 17.7 -5.2 4 4 A S >> - 0 0 44 1,-0.1 3,-1.3 3,-0.1 4,-1.2 -0.033 47.4-103.6 -54.1 160.4 -6.0 15.6 -8.3 5 5 A V H 3> S+ 0 0 112 1,-0.3 4,-2.5 2,-0.2 5,-0.1 0.831 122.3 64.8 -54.7 -34.0 -8.3 12.7 -8.9 6 6 A E H 3> S+ 0 0 104 2,-0.2 4,-2.2 1,-0.2 -1,-0.3 0.858 97.0 55.9 -58.5 -38.2 -5.4 10.5 -8.0 7 7 A F H <> S+ 0 0 71 -3,-1.3 4,-2.1 2,-0.2 3,-0.5 0.980 115.0 35.2 -59.6 -58.5 -5.4 11.9 -4.5 8 8 A N H X S+ 0 0 88 -4,-1.2 4,-2.5 1,-0.2 -1,-0.2 0.812 112.7 64.7 -64.7 -28.3 -9.0 11.0 -3.8 9 9 A N H X S+ 0 0 62 -4,-2.5 4,-0.9 -5,-0.3 -1,-0.2 0.897 106.0 42.1 -59.7 -42.4 -8.4 8.0 -5.9 10 10 A A H >X S+ 0 0 0 -4,-2.2 4,-1.9 -3,-0.5 3,-0.5 0.914 110.7 55.2 -71.5 -45.5 -5.9 6.8 -3.3 11 11 A I H 3X S+ 0 0 14 -4,-2.1 4,-2.9 1,-0.3 -2,-0.2 0.898 104.0 55.7 -54.6 -43.3 -8.1 7.8 -0.3 12 12 A S H 3X S+ 0 0 63 -4,-2.5 4,-2.5 1,-0.2 -1,-0.3 0.853 105.3 53.5 -58.5 -36.4 -10.9 5.7 -1.7 13 13 A Y H < S+ 0 0 76 -4,-2.8 3,-0.9 1,-0.2 -2,-0.2 0.802 112.4 56.7 -60.4 -30.9 -14.7 -0.5 5.7 20 20 A R H 3< S+ 0 0 119 -4,-2.2 3,-0.4 -5,-0.3 -1,-0.2 0.970 114.0 34.6 -66.0 -56.4 -14.0 -3.9 4.1 21 21 A F T 3< S+ 0 0 11 -4,-2.1 7,-0.2 1,-0.2 -1,-0.2 -0.164 74.7 134.7 -93.3 40.2 -12.2 -5.4 7.1 22 22 A L S < S+ 0 0 121 -3,-0.9 -1,-0.2 1,-0.2 -2,-0.1 0.857 79.4 45.2 -55.4 -35.0 -14.2 -3.6 9.7 23 23 A D S S+ 0 0 128 -3,-0.4 -1,-0.2 1,-0.2 3,-0.2 0.866 115.4 47.9 -75.4 -39.1 -14.5 -6.9 11.6 24 24 A H >> + 0 0 89 1,-0.2 3,-1.3 -4,-0.1 4,-0.6 -0.700 62.6 165.4-105.6 78.5 -10.8 -7.7 11.1 25 25 A P H >> + 0 0 84 0, 0.0 4,-1.4 0, 0.0 3,-0.9 0.840 70.0 72.8 -60.3 -34.7 -9.0 -4.4 12.1 26 26 A E H 3> S+ 0 0 136 1,-0.3 4,-1.8 2,-0.2 -2,-0.1 0.788 90.0 61.1 -51.0 -30.4 -5.6 -6.3 12.3 27 27 A I H <> S+ 0 0 26 -3,-1.3 4,-2.3 -6,-0.2 -1,-0.3 0.922 99.1 53.8 -63.9 -45.7 -5.7 -6.4 8.5 28 28 A Y H X S+ 0 0 109 -4,-2.5 4,-1.7 -5,-0.2 3,-0.6 0.923 100.8 58.7 -62.8 -46.6 5.4 1.8 5.7 37 37 A T H 3X S+ 0 0 31 -4,-3.1 4,-2.3 1,-0.3 -1,-0.2 0.877 98.6 61.8 -51.0 -40.1 8.1 -0.9 5.5 38 38 A Y H 3< S+ 0 0 54 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.924 102.8 48.9 -51.1 -50.6 8.9 0.4 2.1 39 39 A Q H XX S+ 0 0 66 -4,-1.1 4,-1.2 -3,-0.6 3,-0.8 0.884 107.4 55.9 -58.3 -42.1 9.9 3.8 3.6 40 40 A K H 3< S+ 0 0 124 -4,-1.7 2,-1.6 1,-0.3 3,-0.3 0.935 102.4 55.2 -57.3 -49.9 12.0 2.1 6.2 41 41 A E T 3< S+ 0 0 84 -4,-2.3 12,-0.5 1,-0.2 -1,-0.3 -0.218 107.0 54.7 -80.4 47.7 14.1 0.3 3.6 42 42 A Q T <4 S+ 0 0 100 -2,-1.6 -1,-0.2 -3,-0.8 -2,-0.2 0.468 96.4 55.8-142.3 -47.1 14.9 3.6 1.9 43 43 A L < + 0 0 121 -4,-1.2 -3,-0.0 -3,-0.3 0, 0.0 0.438 50.0 109.2 -70.7-145.1 16.5 6.0 4.5 44 44 A H S S- 0 0 139 3,-0.1 4,-0.3 -3,-0.0 -1,-0.1 0.919 93.3 -92.9 70.9 45.6 19.5 5.2 6.6 45 45 A T S S+ 0 0 118 2,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.204 105.3 32.2 51.4-133.2 21.7 7.7 4.7 46 46 A K S S- 0 0 149 1,-0.2 2,-2.3 0, 0.0 -4,-0.0 -0.226 86.7-120.4 -53.4 134.9 23.6 6.0 1.8 47 47 A G - 0 0 75 -6,-0.0 -1,-0.2 5,-0.0 -2,-0.1 -0.323 40.9-174.9 -77.2 58.4 21.6 3.1 0.3 48 48 A R - 0 0 201 -2,-2.3 2,-0.1 -4,-0.3 4,-0.0 -0.252 34.3 -98.0 -55.8 138.3 24.2 0.5 1.1 49 49 A P + 0 0 131 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.376 68.9 129.5 -62.9 131.7 23.4 -3.0 -0.4 50 50 A F S S- 0 0 181 -2,-0.1 -2,-0.1 -3,-0.1 0, 0.0 -0.002 88.8 -67.0-179.1 51.6 21.8 -5.3 2.2 51 51 A R S S+ 0 0 237 2,-0.0 -10,-0.0 -10,-0.0 0, 0.0 0.964 75.3 177.5 53.6 60.1 18.6 -6.8 0.8 52 52 A G - 0 0 52 -5,-0.1 2,-0.3 1,-0.1 -10,-0.1 0.642 17.9-119.4 -63.8-134.5 16.7 -3.6 0.7 53 53 A M + 0 0 34 -12,-0.5 2,-0.2 -15,-0.1 -1,-0.1 -0.972 30.6 160.5-170.8 160.9 13.1 -3.3 -0.6 54 54 A S > - 0 0 39 -2,-0.3 4,-1.5 -12,-0.0 5,-0.1 -0.701 62.3 -47.8-158.8-149.9 10.9 -1.6 -3.2 55 55 A E H > S+ 0 0 68 -2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.846 123.2 65.2 -69.5 -36.0 7.6 -1.8 -4.9 56 56 A E H > S+ 0 0 150 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.908 105.4 42.7 -53.8 -47.7 8.1 -5.5 -5.7 57 57 A E H > S+ 0 0 80 2,-0.2 4,-2.8 1,-0.2 3,-0.5 0.940 111.2 54.0 -65.8 -48.8 8.0 -6.5 -2.1 58 58 A V H X S+ 0 0 0 -4,-1.5 4,-2.7 1,-0.3 5,-0.3 0.890 106.0 54.2 -52.9 -42.3 5.1 -4.3 -1.2 59 59 A F H X S+ 0 0 95 -4,-2.5 4,-1.8 1,-0.2 -1,-0.3 0.876 111.8 45.0 -60.0 -38.9 3.1 -5.9 -4.0 60 60 A T H X S+ 0 0 67 -4,-1.3 4,-2.8 -3,-0.5 -2,-0.2 0.944 113.1 47.9 -70.9 -50.6 3.8 -9.3 -2.5 61 61 A E H X S+ 0 0 49 -4,-2.8 4,-1.8 2,-0.2 -2,-0.2 0.923 116.0 44.3 -57.3 -47.3 3.1 -8.4 1.2 62 62 A V H X S+ 0 0 0 -4,-2.7 4,-2.5 -5,-0.2 -1,-0.2 0.910 113.1 51.9 -64.5 -41.4 -0.2 -6.7 0.2 63 63 A A H < S+ 0 0 32 -4,-1.8 -2,-0.2 -5,-0.3 -1,-0.2 0.894 106.6 54.3 -60.8 -40.5 -1.1 -9.6 -2.1 64 64 A N H >< S+ 0 0 108 -4,-2.8 3,-0.8 1,-0.2 -1,-0.2 0.890 110.9 46.5 -60.6 -40.7 -0.4 -12.0 0.8 65 65 A L H 3< S+ 0 0 43 -4,-1.8 2,-1.6 1,-0.3 -2,-0.2 0.989 112.7 46.0 -63.9 -63.6 -2.9 -10.0 3.0 66 66 A F T 3< S+ 0 0 1 -4,-2.5 -1,-0.3 -5,-0.1 7,-0.2 -0.142 84.5 170.2 -75.5 42.2 -5.7 -9.7 0.4 67 67 A R S < S- 0 0 205 -2,-1.6 2,-1.3 -3,-0.8 -3,-0.1 -0.340 71.1 -3.8 -59.1 131.0 -5.3 -13.4 -0.4 68 68 A G S S+ 0 0 58 1,-0.1 2,-1.8 -5,-0.1 -1,-0.2 -0.123 115.9 90.6 78.2 -41.9 -8.2 -14.6 -2.6 69 69 A Q >> + 0 0 56 -2,-1.3 3,-1.2 1,-0.2 4,-0.8 -0.325 45.3 154.1 -82.2 53.9 -9.7 -11.2 -2.3 70 70 A E H 3> + 0 0 142 -2,-1.8 4,-1.8 1,-0.2 -1,-0.2 0.457 49.9 91.7 -63.5 1.7 -7.9 -9.9 -5.4 71 71 A D H 3> S+ 0 0 132 2,-0.2 4,-0.6 1,-0.2 -1,-0.2 0.957 94.9 33.8 -61.5 -50.1 -10.7 -7.4 -5.8 72 72 A L H X> S+ 0 0 11 -3,-1.2 4,-1.8 1,-0.2 3,-0.7 0.823 110.7 66.9 -72.3 -32.7 -8.8 -4.8 -3.8 73 73 A L H 3X S+ 0 0 17 -4,-0.8 4,-2.9 1,-0.3 -1,-0.2 0.861 92.4 61.2 -55.2 -38.9 -5.6 -6.1 -5.2 74 74 A S H 3X S+ 0 0 75 -4,-1.8 4,-1.4 -3,-0.2 -1,-0.3 0.881 103.5 49.7 -56.9 -41.0 -6.7 -4.9 -8.6 75 75 A E H X S+ 0 0 0 -4,-1.8 4,-1.6 1,-0.2 3,-0.7 0.896 108.7 56.6 -58.1 -42.4 -3.3 -1.6 -5.7 77 77 A G H 3< S+ 0 0 14 -4,-2.9 -1,-0.2 1,-0.2 -2,-0.2 0.833 94.8 66.9 -59.2 -34.8 -2.0 -3.1 -9.0 78 78 A Q H 3< S+ 0 0 109 -4,-1.4 -1,-0.2 -3,-0.5 -2,-0.2 0.895 104.2 43.9 -54.0 -43.5 -3.3 -0.0 -10.9 79 79 A F H << S+ 0 0 34 -4,-0.9 -1,-0.2 -3,-0.7 -2,-0.2 0.938 104.9 73.2 -67.9 -47.7 -0.7 2.2 -9.1 80 80 A L S < S- 0 0 12 -4,-1.6 3,-0.1 1,-0.1 2,-0.0 -0.348 106.0 -84.2 -67.8 147.5 2.1 -0.3 -9.5 81 81 A P - 0 0 100 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.292 49.0-113.8 -55.8 128.1 3.6 -0.8 -13.0 82 82 A E - 0 0 141 -4,-0.2 3,-0.1 -3,-0.1 -4,-0.0 -0.437 30.7-147.7 -67.1 132.5 1.6 -3.2 -15.1 83 83 A A - 0 0 96 1,-0.2 2,-0.1 -2,-0.2 -1,-0.1 0.389 52.7 -23.4 -76.0-145.0 3.4 -6.4 -16.0 84 84 A K 0 0 195 1,-0.1 -1,-0.2 0, 0.0 0, 0.0 -0.423 360.0 360.0 -69.9 141.5 3.0 -8.5 -19.1 85 85 A R 0 0 275 -2,-0.1 -2,-0.2 -3,-0.1 -1,-0.1 0.913 360.0 360.0 62.5 360.0 -0.3 -8.1 -21.0 86 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 87 1 B N >> 0 0 71 0, 0.0 4,-1.2 0, 0.0 3,-0.6 0.000 360.0 360.0 360.0 -39.3 2.1 6.2 -6.7 88 2 B I H 3> + 0 0 8 1,-0.2 4,-3.3 2,-0.2 5,-0.3 0.829 360.0 67.5 -63.9 -32.7 2.9 4.7 -3.3 89 3 B Q H 3> S+ 0 0 103 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.876 99.8 49.6 -55.2 -40.9 3.2 8.2 -1.9 90 4 B M H <> S+ 0 0 33 -3,-0.6 4,-2.3 2,-0.2 -1,-0.2 0.924 115.5 40.9 -66.2 -46.8 -0.6 8.7 -2.4 91 5 B L H X S+ 0 0 0 -4,-1.2 4,-1.7 2,-0.2 -2,-0.2 0.945 116.7 48.4 -67.4 -48.8 -1.6 5.5 -0.7 92 6 B L H X S+ 0 0 29 -4,-3.3 4,-0.8 1,-0.2 -2,-0.2 0.911 117.4 42.5 -57.1 -45.0 0.9 5.8 2.1 93 7 B E H >X S+ 0 0 91 -4,-2.2 4,-1.6 -5,-0.3 3,-0.5 0.861 105.3 65.0 -69.7 -37.4 -0.1 9.4 2.7 94 8 B A H 3X S+ 0 0 0 -4,-2.3 4,-2.1 1,-0.2 5,-0.3 0.871 94.4 60.1 -53.0 -41.8 -3.8 8.5 2.3 95 9 B A H 3X S+ 0 0 8 -4,-1.7 4,-2.5 1,-0.2 -1,-0.2 0.905 104.2 49.1 -54.6 -45.4 -3.7 6.3 5.4 96 10 B D H << S+ 0 0 94 -4,-0.8 -1,-0.2 -3,-0.5 -2,-0.2 0.881 107.6 56.4 -62.6 -39.4 -2.6 9.3 7.5 97 11 B Y H < S+ 0 0 150 -4,-1.6 -2,-0.2 1,-0.2 -1,-0.2 0.954 112.7 38.5 -57.5 -55.0 -5.5 11.4 6.1 98 12 B L H < 0 0 42 -4,-2.1 -2,-0.2 1,-0.1 -1,-0.2 0.919 360.0 360.0 -63.6 -45.3 -8.2 8.9 7.1 99 13 B E < 0 0 170 -4,-2.5 -2,-0.2 -5,-0.3 -3,-0.2 0.999 360.0 360.0 -64.4 360.0 -6.6 8.2 10.4