==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 15-FEB-07 2EEI . COMPND 2 MOLECULE: PDZ DOMAIN-CONTAINING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.N.NIRAULA,T.TOMIZAWA,K.KOSHIBA,M.INOUE,T.KIGAWA, . 106 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7947.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 58.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 19.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 15.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 12.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 127 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-135.7 18.0 -8.3 -11.0 2 2 A S + 0 0 129 0, 0.0 2,-1.0 0, 0.0 3,-0.1 -0.214 360.0 138.0-123.0 41.1 15.7 -7.0 -13.8 3 3 A S S S- 0 0 123 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.764 72.3 -3.2 -92.6 99.6 13.9 -10.2 -14.7 4 4 A G - 0 0 75 -2,-1.0 -1,-0.2 3,-0.0 3,-0.1 0.698 56.7-175.2 87.5 111.5 10.3 -9.3 -15.2 5 5 A S + 0 0 97 1,-0.4 2,-0.3 -3,-0.1 -2,-0.1 0.849 69.0 9.9-100.8 -55.4 8.9 -5.8 -14.7 6 6 A S + 0 0 94 5,-0.0 -1,-0.4 4,-0.0 2,-0.1 -0.944 68.0 133.3-129.9 150.7 5.2 -6.0 -15.2 7 7 A G S S- 0 0 60 2,-0.7 4,-0.1 -2,-0.3 -3,-0.0 -0.386 70.8 -15.4-154.6-125.7 2.8 -8.9 -15.5 8 8 A Q S S+ 0 0 174 -2,-0.1 -2,-0.0 2,-0.1 0, 0.0 0.976 120.3 54.4 -60.8 -58.3 -0.6 -10.0 -14.2 9 9 A P S S- 0 0 37 0, 0.0 -2,-0.7 0, 0.0 2,-0.4 -0.064 95.1 -99.2 -69.8 175.3 -0.6 -7.6 -11.2 10 10 A R E -A 87 0A 170 77,-1.2 77,-1.1 -4,-0.1 2,-0.7 -0.855 26.3-130.9-104.2 134.0 -0.2 -3.9 -11.4 11 11 A L E -A 86 0A 43 -2,-0.4 2,-0.9 75,-0.2 75,-0.2 -0.730 17.9-162.3 -86.0 115.7 3.1 -2.2 -10.7 12 12 A C E -A 85 0A 4 73,-3.2 73,-2.8 -2,-0.7 2,-0.9 -0.819 3.4-166.3-102.0 97.8 2.7 0.7 -8.2 13 13 A Y E -A 84 0A 125 -2,-0.9 2,-0.3 35,-0.3 71,-0.2 -0.737 9.0-160.3 -87.6 105.3 5.8 3.0 -8.4 14 14 A L E -A 83 0A 0 69,-1.4 69,-2.0 -2,-0.9 2,-0.4 -0.622 5.9-166.4 -86.8 143.5 5.7 5.3 -5.4 15 15 A V E -A 82 0A 66 -2,-0.3 67,-0.2 67,-0.2 -2,-0.0 -0.934 28.1-113.7-135.5 111.5 7.8 8.5 -5.5 16 16 A K + 0 0 105 65,-1.8 3,-0.1 -2,-0.4 4,-0.1 -0.084 51.8 147.9 -41.4 129.1 8.4 10.5 -2.3 17 17 A E + 0 0 157 1,-0.2 2,-0.4 3,-0.0 -1,-0.2 0.562 62.0 17.5-131.8 -57.0 6.6 13.9 -2.6 18 18 A G S S- 0 0 39 2,-0.3 2,-0.7 0, 0.0 -1,-0.2 -0.962 109.7 -66.0-132.0 118.3 5.5 15.2 0.7 19 19 A G S S+ 0 0 81 -2,-0.4 2,-0.3 -3,-0.1 -3,-0.0 -0.188 117.5 10.4 46.5 -92.1 6.7 14.0 4.1 20 20 A S S S- 0 0 93 -2,-0.7 -2,-0.3 1,-0.2 24,-0.2 -0.824 92.4 -90.6-116.2 155.4 5.3 10.4 3.9 21 21 A Y - 0 0 22 -2,-0.3 -1,-0.2 1,-0.1 19,-0.1 0.154 40.4-106.4 -50.2 176.5 3.8 8.5 1.0 22 22 A G S S+ 0 0 4 18,-0.1 18,-2.2 17,-0.1 2,-0.3 0.212 95.3 74.5 -94.9 15.2 0.1 8.6 0.4 23 23 A F - 0 0 15 16,-0.2 2,-0.4 22,-0.1 16,-0.2 -0.785 63.9-148.6-123.4 167.5 -0.4 5.0 1.7 24 24 A S - 0 0 46 14,-0.5 13,-2.3 -2,-0.3 14,-0.7 -1.000 5.8-149.1-141.1 137.0 -0.4 3.3 5.1 25 25 A L E +D 36 0B 30 -2,-0.4 2,-0.3 11,-0.2 11,-0.2 -0.799 18.0 174.1-106.4 147.6 0.7 -0.2 6.2 26 26 A K E -D 35 0B 95 9,-0.9 9,-0.7 -2,-0.3 2,-0.5 -0.995 27.9-124.9-152.1 146.4 -0.8 -2.2 9.1 27 27 A T - 0 0 95 -2,-0.3 2,-0.4 7,-0.1 7,-0.1 -0.819 23.3-154.6 -97.1 126.3 -0.5 -5.7 10.5 28 28 A V - 0 0 36 -2,-0.5 3,-0.3 5,-0.5 2,-0.1 -0.823 23.0-110.8-102.2 137.4 -3.7 -7.7 10.9 29 29 A Q S S+ 0 0 189 -2,-0.4 2,-0.4 1,-0.2 3,-0.1 -0.397 100.7 9.6 -65.3 135.3 -4.0 -10.5 13.5 30 30 A G S S+ 0 0 86 1,-0.2 -1,-0.2 -2,-0.1 2,-0.2 -0.155 107.9 101.1 89.2 -41.4 -4.1 -14.0 11.9 31 31 A K - 0 0 105 -2,-0.4 2,-0.6 -3,-0.3 -1,-0.2 -0.492 68.1-135.6 -78.8 147.5 -3.2 -12.7 8.5 32 32 A K + 0 0 174 -2,-0.2 35,-0.1 -3,-0.1 2,-0.1 -0.913 64.6 17.8-108.7 121.6 0.3 -13.1 7.2 33 33 A G S S- 0 0 18 -2,-0.6 -5,-0.5 33,-0.1 2,-0.2 -0.170 79.1 -89.0 106.6 158.5 2.0 -10.1 5.5 34 34 A V + 0 0 1 30,-0.5 22,-1.8 33,-0.4 2,-0.3 -0.666 40.2 171.5-104.4 160.7 1.3 -6.4 5.3 35 35 A Y E -DE 26 55B 32 -9,-0.7 -9,-0.9 -2,-0.2 2,-0.3 -0.953 39.3 -75.8-156.9 172.3 -0.8 -4.4 2.9 36 36 A M E +DE 25 54B 0 18,-1.0 17,-2.7 -2,-0.3 18,-0.6 -0.607 44.7 158.5 -80.1 133.3 -2.2 -0.9 2.1 37 37 A T + 0 0 60 -13,-2.3 2,-0.6 -2,-0.3 -1,-0.2 0.678 64.9 45.1-120.0 -43.2 -5.1 0.2 4.3 38 38 A D - 0 0 90 -14,-0.7 2,-0.8 14,-0.1 -14,-0.5 -0.924 61.0-174.4-112.7 113.1 -5.2 4.0 4.1 39 39 A I - 0 0 24 -2,-0.6 -16,-0.2 -16,-0.2 13,-0.1 -0.804 22.4-138.9-109.0 91.3 -4.8 5.5 0.6 40 40 A T > - 0 0 57 -18,-2.2 3,-0.9 -2,-0.8 6,-0.8 -0.109 27.5-106.3 -47.4 138.8 -4.6 9.3 1.0 41 41 A P T 3 S- 0 0 71 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.333 94.0 -2.1 -69.8 150.7 -6.6 11.2 -1.7 42 42 A Q T 3 S+ 0 0 165 1,-0.1 2,-0.1 4,-0.1 -2,-0.1 0.822 110.6 126.4 34.4 43.6 -4.8 13.0 -4.5 43 43 A G S <> S- 0 0 19 -3,-0.9 4,-1.3 -21,-0.1 5,-0.2 -0.370 81.9 -77.4-113.6-166.3 -1.6 11.9 -2.8 44 44 A V H > S+ 0 0 24 -24,-0.2 4,-1.2 2,-0.2 -29,-0.2 0.874 130.7 39.0 -62.2 -38.4 1.6 10.0 -3.7 45 45 A A H >>>S+ 0 0 0 2,-0.2 4,-1.7 1,-0.2 5,-1.2 0.980 114.0 49.2 -75.3 -62.5 -0.3 6.7 -3.5 46 46 A M H 345S+ 0 0 99 -6,-0.8 -2,-0.2 1,-0.3 -1,-0.2 0.748 114.1 52.2 -49.5 -23.7 -3.6 7.6 -5.1 47 47 A R H 3<5S+ 0 0 200 -4,-1.3 -1,-0.3 1,-0.2 -2,-0.2 0.855 104.1 53.0 -81.8 -38.3 -1.4 9.1 -7.8 48 48 A A H <<5S- 0 0 33 -4,-1.2 -35,-0.3 -3,-0.8 -2,-0.2 0.748 117.1-112.9 -68.4 -23.7 0.6 6.0 -8.4 49 49 A G T <5 + 0 0 29 -4,-1.7 2,-0.5 1,-0.3 -3,-0.2 0.787 62.7 151.3 94.6 33.1 -2.6 4.0 -8.9 50 50 A V < - 0 0 3 -5,-1.2 -1,-0.3 -37,-0.0 2,-0.1 -0.871 29.8-152.9-102.9 123.8 -2.3 1.8 -5.8 51 51 A L - 0 0 77 -2,-0.5 3,-0.4 1,-0.1 -15,-0.2 -0.406 19.4-106.6 -88.3 167.4 -5.6 0.6 -4.3 52 52 A A S S+ 0 0 33 1,-0.2 -15,-0.2 -2,-0.1 38,-0.2 -0.233 95.7 38.0 -85.4 178.2 -6.2 -0.3 -0.6 53 53 A D S S+ 0 0 62 -17,-2.7 2,-0.6 1,-0.2 -1,-0.2 0.842 82.0 147.7 47.4 37.4 -6.6 -3.8 0.9 54 54 A D E -E 36 0B 6 -18,-0.6 -18,-1.0 -3,-0.4 -1,-0.2 -0.903 50.0-127.9-108.7 111.6 -4.0 -4.9 -1.6 55 55 A H E -E 35 0B 73 -2,-0.6 33,-0.7 -20,-0.2 -20,-0.2 -0.340 30.0-116.2 -57.8 125.9 -1.7 -7.8 -0.3 56 56 A L E +B 87 0A 0 -22,-1.8 31,-0.2 31,-0.2 11,-0.1 -0.407 34.6 176.3 -66.6 137.3 1.9 -6.8 -0.8 57 57 A I E - 0 0 27 29,-2.4 8,-1.0 1,-0.4 7,-0.5 0.721 64.1 -20.7-110.1 -36.9 3.9 -9.0 -3.2 58 58 A E E -BC 86 63A 46 28,-0.9 28,-1.7 5,-0.3 2,-0.4 -0.908 52.5-139.7-173.8 145.1 7.3 -7.2 -3.3 59 59 A V E > S-BC 85 62A 0 3,-2.9 3,-1.5 -2,-0.3 26,-0.2 -0.952 83.5 -18.1-117.8 131.2 8.9 -3.9 -2.5 60 60 A N T 3 S- 0 0 72 24,-1.9 -1,-0.2 -2,-0.4 25,-0.1 0.787 135.3 -45.7 47.5 29.2 11.6 -2.3 -4.6 61 61 A G T 3 S+ 0 0 50 23,-0.7 2,-0.5 1,-0.2 -1,-0.3 0.711 116.9 118.8 88.1 22.4 12.1 -5.7 -6.1 62 62 A E E < -C 59 0A 91 -3,-1.5 -3,-2.9 22,-0.3 -1,-0.2 -0.908 68.0-123.3-126.7 104.3 12.0 -7.5 -2.7 63 63 A N E +C 58 0A 102 -2,-0.5 -5,-0.3 -5,-0.3 -6,-0.1 -0.166 34.7 170.5 -45.3 121.6 9.3 -10.1 -2.1 64 64 A V > + 0 0 0 -7,-0.5 3,-3.0 1,-0.1 -30,-0.5 0.281 38.5 117.5-118.6 5.6 7.4 -9.0 1.0 65 65 A E T 3 S+ 0 0 59 -8,-1.0 -9,-0.1 1,-0.3 -7,-0.1 0.886 96.4 19.8 -38.1 -55.9 4.5 -11.4 0.8 66 66 A D T 3 S+ 0 0 134 -9,-0.1 2,-0.4 -33,-0.1 -1,-0.3 -0.184 100.5 128.0-110.4 38.7 5.6 -13.0 4.1 67 67 A A < - 0 0 14 -3,-3.0 -33,-0.4 -11,-0.1 2,-0.1 -0.811 60.4-118.0 -99.9 135.4 7.7 -10.0 5.3 68 68 A S >> - 0 0 78 -2,-0.4 4,-1.8 1,-0.1 3,-1.5 -0.397 26.9-112.5 -70.0 144.5 7.1 -8.5 8.7 69 69 A H H 3> S+ 0 0 55 1,-0.3 4,-2.9 2,-0.2 5,-0.4 0.871 120.5 56.0 -41.3 -47.2 6.0 -4.9 8.9 70 70 A E H 3> S+ 0 0 138 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.877 105.1 52.3 -55.4 -39.9 9.4 -4.1 10.4 71 71 A E H <> S+ 0 0 100 -3,-1.5 4,-1.5 2,-0.2 -1,-0.2 0.894 117.1 38.3 -64.2 -41.1 11.1 -5.6 7.4 72 72 A V H >X S+ 0 0 0 -4,-1.8 4,-2.9 2,-0.2 3,-0.6 0.986 112.4 52.3 -73.2 -63.9 9.0 -3.5 5.0 73 73 A V H 3X S+ 0 0 56 -4,-2.9 4,-1.4 1,-0.3 -1,-0.2 0.797 116.4 45.4 -42.6 -32.8 8.9 -0.2 6.9 74 74 A E H 3X S+ 0 0 75 -4,-1.4 4,-2.2 -5,-0.4 -1,-0.3 0.851 111.0 50.5 -81.0 -37.7 12.7 -0.5 7.1 75 75 A K H - 0 0 56 -2,-0.3 4,-2.3 1,-0.1 -34,-0.1 -0.248 27.8-124.6 -63.3 151.7 -6.5 -5.6 -6.9 90 90 A K T 4 S+ 0 0 127 -38,-0.2 5,-0.1 1,-0.2 -1,-0.1 0.819 112.7 45.4 -66.9 -31.2 -9.0 -6.2 -4.1 91 91 A E T 4 S+ 0 0 170 1,-0.1 -1,-0.2 3,-0.1 -2,-0.0 0.914 111.8 49.8 -77.9 -46.2 -11.5 -7.5 -6.6 92 92 A T T 4 S+ 0 0 88 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.941 106.3 64.5 -58.0 -50.7 -9.1 -9.8 -8.5 93 93 A D S < S- 0 0 47 -4,-2.3 2,-0.4 1,-0.1 -39,-0.0 -0.035 82.8-127.2 -66.3 175.4 -7.8 -11.4 -5.3 94 94 A K - 0 0 204 2,-0.0 2,-0.2 3,-0.0 -3,-0.1 -0.993 24.2-177.5-134.1 129.0 -9.9 -13.5 -3.0 95 95 A R - 0 0 139 -2,-0.4 2,-1.2 -5,-0.1 -5,-0.0 -0.644 48.9 -65.7-116.8 174.9 -10.4 -13.1 0.8 96 96 A H - 0 0 151 -2,-0.2 2,-0.6 1,-0.1 -1,-0.0 -0.453 57.2-171.1 -64.3 96.0 -12.3 -15.0 3.5 97 97 A V + 0 0 127 -2,-1.2 2,-0.3 2,-0.0 -1,-0.1 -0.831 23.9 130.7 -97.0 116.8 -15.9 -14.4 2.4 98 98 A E S S- 0 0 136 -2,-0.6 2,-1.2 3,-0.0 3,-0.0 -0.982 70.0 -61.6-158.0 162.7 -18.5 -15.6 4.9 99 99 A Q - 0 0 174 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.251 64.5-140.6 -51.3 88.9 -21.7 -14.4 6.7 100 100 A K - 0 0 161 -2,-1.2 2,-0.4 1,-0.1 -1,-0.1 -0.016 10.9-124.9 -50.2 159.0 -20.1 -11.5 8.5 101 101 A S - 0 0 114 1,-0.0 -1,-0.1 -3,-0.0 3,-0.1 -0.913 21.8-161.4-115.1 139.2 -21.1 -10.9 12.1 102 102 A G - 0 0 54 -2,-0.4 2,-0.1 1,-0.2 -1,-0.0 -0.061 44.7 -39.7 -98.6-158.3 -22.5 -7.6 13.5 103 103 A P - 0 0 136 0, 0.0 2,-0.4 0, 0.0 -1,-0.2 -0.432 54.5-151.3 -69.7 138.2 -22.9 -6.1 17.0 104 104 A S + 0 0 109 -2,-0.1 2,-0.3 -3,-0.1 -3,-0.0 -0.934 17.5 173.5-116.2 134.7 -24.0 -8.5 19.7 105 105 A S 0 0 130 -2,-0.4 0, 0.0 0, 0.0 0, 0.0 -0.997 360.0 360.0-140.7 143.5 -25.9 -7.5 22.8 106 106 A G 0 0 133 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.630 360.0 360.0 126.4 360.0 -27.5 -9.4 25.7