==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 10-APR-00 1ESK . COMPND 2 MOLECULE: GAG POLYPROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR N.MORELLET,H.DEMENE,V.TEILLEUX,T.HUYNH-DINH,H.DE ROCQUIGNY, . 42 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3587.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 11 26.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 4.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 12 A N 0 0 164 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-177.1 97.9 141.3 106.7 2 13 A V + 0 0 83 8,-0.1 9,-2.4 9,-0.0 2,-0.3 -0.350 360.0 176.1 -50.6 137.1 101.7 141.8 106.4 3 14 A K B -A 10 0A 107 7,-0.3 11,-0.3 8,-0.2 7,-0.2 -0.925 28.2 -93.9-145.2 174.3 103.1 139.4 103.8 4 15 A C - 0 0 5 5,-1.1 9,-0.1 -2,-0.3 6,-0.0 -0.496 9.0-155.4 -93.6 149.1 106.3 138.6 102.1 5 16 A F S S+ 0 0 90 -2,-0.2 17,-0.1 2,-0.1 -1,-0.1 0.800 96.2 51.3 -91.0 -37.9 107.7 139.9 98.8 6 17 A N S S- 0 0 7 15,-0.1 16,-0.2 3,-0.1 18,-0.1 0.998 136.8 -2.3 -54.4 -83.6 109.9 136.8 98.3 7 18 A C S S- 0 0 51 2,-0.1 -2,-0.1 14,-0.1 -1,-0.1 0.745 89.3-130.8 -94.6 -29.8 107.4 134.0 98.8 8 19 A G + 0 0 46 1,-0.3 2,-0.4 4,-0.1 -3,-0.1 0.896 54.2 137.7 75.6 46.6 104.1 135.9 99.6 9 20 A K > - 0 0 150 3,-0.1 -5,-1.1 1,-0.1 3,-0.5 -0.915 53.4-110.5-112.9 146.3 102.8 134.2 102.7 10 21 A E B 3 S+A 3 0A 115 -2,-0.4 -7,-0.3 -7,-0.2 -1,-0.1 -0.105 89.0 47.4 -75.2 170.9 101.5 136.4 105.4 11 22 A G T 3 S+ 0 0 60 -9,-2.4 2,-0.3 1,-0.1 -1,-0.2 0.538 106.5 56.6 74.9 13.1 102.9 137.2 108.9 12 23 A H < - 0 0 42 -3,-0.5 2,-0.2 -10,-0.2 -1,-0.1 -0.976 68.3-131.3-160.3 167.2 106.4 137.8 107.6 13 24 A T >> - 0 0 20 -2,-0.3 4,-2.6 -9,-0.1 3,-1.1 -0.700 36.6-102.0-112.5 165.8 108.5 139.9 105.2 14 25 A A T 34 S+ 0 0 7 1,-0.3 5,-0.1 -11,-0.3 -10,-0.1 0.716 121.7 62.1 -59.0 -24.3 111.2 139.1 102.7 15 26 A R T 34 S+ 0 0 181 1,-0.2 -1,-0.3 3,-0.1 -11,-0.0 0.792 111.7 37.2 -73.5 -27.5 113.8 140.3 105.3 16 27 A N T <4 S+ 0 0 77 -3,-1.1 2,-0.2 2,-0.0 -2,-0.2 0.842 98.7 96.5 -82.8 -41.2 112.6 137.5 107.6 17 28 A C < - 0 0 11 -4,-2.6 2,-0.1 1,-0.1 -12,-0.0 -0.354 46.8-177.8 -61.4 117.9 112.1 135.0 104.7 18 29 A R + 0 0 207 -2,-0.2 -1,-0.1 1,-0.2 -3,-0.1 -0.492 58.9 102.7-111.2 56.4 115.1 132.7 104.2 19 30 A A S S- 0 0 38 -5,-0.1 -1,-0.2 -2,-0.1 -2,-0.1 0.096 89.4-118.3-114.9 18.8 113.4 131.0 101.3 20 31 A P - 0 0 83 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 0.442 44.8 -62.9 40.8 165.0 115.6 133.0 98.8 21 32 A R - 0 0 125 1,-0.1 -15,-0.1 2,-0.0 2,-0.1 -0.441 58.5-120.3 -88.0 152.7 113.9 135.4 96.4 22 33 A K - 0 0 102 -16,-0.2 13,-0.3 -17,-0.1 4,-0.1 -0.242 7.4-127.1 -94.1 169.4 111.5 134.1 93.7 23 34 A K S S+ 0 0 141 11,-0.1 10,-0.1 2,-0.1 3,-0.1 0.678 86.5 78.7 -89.8 -28.8 111.1 134.1 90.0 24 35 A G S S- 0 0 20 1,-0.2 11,-0.6 10,-0.1 2,-0.4 -0.051 108.8 -58.9 -63.1 176.6 107.7 135.6 89.8 25 36 A C - 0 0 13 5,-2.7 4,-0.5 9,-0.3 -1,-0.2 -0.542 42.7-152.6 -66.2 123.6 107.1 139.3 90.3 26 37 A W S S+ 0 0 71 -2,-0.4 -1,-0.2 -4,-0.1 -18,-0.1 0.656 90.5 17.4 -64.7 -20.6 108.5 140.3 93.6 27 38 A K S S+ 0 0 139 3,-0.1 -1,-0.1 8,-0.0 -2,-0.1 0.763 120.5 48.3-121.4 -60.1 105.9 143.2 93.7 28 39 A C S S- 0 0 57 1,-0.1 -2,-0.1 2,-0.1 3,-0.1 0.664 93.4-128.1 -78.1 -15.2 103.0 143.1 91.4 29 40 A G + 0 0 61 -4,-0.5 -1,-0.1 1,-0.4 -5,-0.0 0.044 69.1 116.5 97.1 -23.4 102.1 139.4 92.3 30 41 A K - 0 0 140 1,-0.1 -5,-2.7 -6,-0.1 -1,-0.4 -0.243 48.3-159.9 -67.5 167.4 101.9 138.0 88.8 31 42 A E + 0 0 168 -7,-0.3 2,-1.7 -3,-0.1 -1,-0.1 0.375 65.6 99.8-134.9 -3.2 104.4 135.3 87.8 32 43 A G S S+ 0 0 73 2,-0.0 2,-0.2 -8,-0.0 -8,-0.1 -0.384 102.2 11.2 -81.3 55.4 104.4 135.4 83.9 33 44 A H S S- 0 0 46 -2,-1.7 -8,-0.2 -10,-0.1 2,-0.2 -0.727 87.3-103.0 151.9 168.2 107.6 137.4 84.3 34 45 A Q > - 0 0 48 -2,-0.2 4,-2.1 -10,-0.1 -9,-0.3 -0.427 40.9 -89.5-108.9-174.1 110.1 138.4 87.1 35 46 A M T 4 S+ 0 0 88 -11,-0.6 -10,-0.1 -13,-0.3 -12,-0.1 0.864 126.4 44.7 -70.5 -38.3 110.7 141.5 89.2 36 47 A K T 4 S+ 0 0 146 1,-0.2 -1,-0.2 3,-0.1 -11,-0.0 0.969 113.9 50.2 -63.4 -58.4 113.1 143.0 86.7 37 48 A D T 4 S+ 0 0 88 2,-0.1 -2,-0.2 3,-0.0 -1,-0.2 0.799 83.4 110.1 -48.6 -45.9 110.9 142.1 83.6 38 49 A C >< - 0 0 8 -4,-2.1 2,-1.5 1,-0.2 3,-0.8 -0.146 61.8-147.7 -51.9 121.4 107.7 143.7 85.1 39 50 A T T 3 + 0 0 108 1,-0.2 -1,-0.2 2,-0.1 -2,-0.1 -0.427 68.2 113.1 -84.4 56.9 106.6 146.9 83.3 40 51 A E T 3 S+ 0 0 69 -2,-1.5 -1,-0.2 0, 0.0 -2,-0.1 0.716 85.2 37.7 -90.9 -34.7 105.2 148.2 86.6 41 52 A R < 0 0 138 -3,-0.8 -2,-0.1 1,-0.1 -3,-0.0 0.915 360.0 360.0 -73.6 -53.3 107.9 151.0 86.5 42 53 A Q 0 0 194 -4,-0.3 -1,-0.1 0, 0.0 0, 0.0 -0.686 360.0 360.0 -88.3 360.0 107.8 151.5 82.8