==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN/RNA COMPLEX 26-OCT-05 2ESE . COMPND 2 MOLECULE: VTS1P; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR F.H.T.ALLAIN . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5259.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 64.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 42.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 443 A M 0 0 197 0, 0.0 21,-0.1 0, 0.0 2,-0.1 0.000 360.0 360.0 360.0 101.3 -5.5 -2.9 -3.6 2 444 A P - 0 0 32 0, 0.0 19,-0.1 0, 0.0 18,-0.0 -0.319 360.0-170.3 -74.2 167.0 -4.9 -6.5 -2.5 3 445 A K S S+ 0 0 199 -2,-0.1 17,-0.0 17,-0.1 0, 0.0 0.456 76.6 0.6-134.1 -11.0 -1.7 -8.6 -3.3 4 446 A S + 0 0 71 16,-0.1 2,-1.9 3,-0.0 0, 0.0 0.389 52.2 160.0-141.2 -80.3 -2.5 -12.2 -2.2 5 447 A L + 0 0 3 1,-0.2 2,-0.8 12,-0.1 6,-0.1 -0.199 68.8 86.5 63.4 -37.7 -6.0 -13.2 -0.7 6 448 A T + 0 0 31 -2,-1.9 71,-0.3 4,-0.1 -1,-0.2 -0.073 65.4 121.9 -68.6 27.3 -5.1 -16.9 -1.7 7 449 A D > - 0 0 53 -2,-0.8 4,-3.1 1,-0.1 5,-0.2 -0.875 61.5-145.1-108.0 126.8 -3.3 -17.0 1.7 8 450 A P H > S+ 0 0 21 0, 0.0 4,-2.5 0, 0.0 5,-0.2 0.774 98.6 55.1 -70.4 -24.8 -4.4 -19.7 4.3 9 451 A K H > S+ 0 0 128 2,-0.2 4,-1.3 3,-0.2 7,-0.2 0.917 115.5 38.8 -74.1 -41.8 -3.8 -17.5 7.4 10 452 A L H 4 S+ 0 0 21 2,-0.2 7,-0.7 6,-0.2 6,-0.2 0.942 115.5 52.9 -68.1 -48.7 -6.1 -14.8 5.9 11 453 A L H < S+ 0 0 1 -4,-3.1 24,-0.6 1,-0.2 3,-0.3 0.920 114.2 42.2 -58.8 -43.1 -8.6 -17.3 4.6 12 454 A K H < S+ 0 0 127 -4,-2.5 2,-0.6 1,-0.2 -1,-0.2 0.818 117.8 50.6 -68.1 -29.7 -8.9 -19.0 8.0 13 455 A N S >X S- 0 0 75 -4,-1.3 3,-1.6 1,-0.2 4,-1.6 -0.728 70.2-172.1-115.4 83.0 -8.9 -15.6 9.8 14 456 A I H 3> S+ 0 0 15 -2,-0.6 4,-2.2 -3,-0.3 5,-0.2 0.784 81.8 59.2 -46.1 -42.7 -11.6 -13.5 8.0 15 457 A P H 3> S+ 0 0 52 0, 0.0 4,-1.4 0, 0.0 -1,-0.3 0.887 109.9 43.4 -51.6 -41.7 -10.7 -10.2 9.8 16 458 A M H <> S+ 0 0 83 -3,-1.6 4,-1.4 2,-0.2 -2,-0.2 0.798 109.0 56.1 -84.1 -26.0 -7.1 -10.3 8.5 17 459 A W H < S+ 0 0 2 -4,-1.6 3,-0.2 -7,-0.7 -1,-0.2 0.950 112.7 44.2 -58.6 -46.7 -8.2 -11.3 4.9 18 460 A L H ><>S+ 0 0 0 -4,-2.2 5,-1.5 1,-0.2 3,-1.4 0.738 101.3 67.7 -74.3 -25.8 -10.3 -8.1 5.1 19 461 A K H ><5S+ 0 0 126 -4,-1.4 3,-1.6 1,-0.2 -1,-0.2 0.950 97.9 53.5 -54.4 -47.8 -7.4 -6.1 6.6 20 462 A S T 3<5S+ 0 0 59 -4,-1.4 -1,-0.2 1,-0.2 -2,-0.2 0.466 111.4 48.1 -64.8 -2.7 -5.6 -6.5 3.2 21 463 A L T < 5S- 0 0 0 -3,-1.4 -1,-0.2 -19,-0.1 -2,-0.2 0.292 105.9-120.7-119.9 2.0 -8.8 -5.1 1.5 22 464 A R T < 5S+ 0 0 209 -3,-1.6 3,-0.2 -4,-0.3 -3,-0.2 0.613 91.0 105.1 58.0 16.4 -9.5 -1.9 3.7 23 465 A L > < + 0 0 16 -5,-1.5 3,-2.6 1,-0.1 -4,-0.2 0.315 33.1 118.7-104.3 7.1 -12.9 -3.5 4.5 24 466 A H T 3 + 0 0 61 -6,-0.8 -1,-0.1 1,-0.3 -5,-0.1 0.385 64.1 69.8 -60.1 6.1 -11.9 -4.5 8.1 25 467 A K T 3 S+ 0 0 161 -3,-0.2 3,-0.4 1,-0.2 -1,-0.3 0.744 100.2 47.3 -86.2 -28.5 -14.7 -2.2 9.4 26 468 A Y S <> S+ 0 0 68 -3,-2.6 4,-1.9 1,-0.2 3,-0.4 0.202 79.4 112.7 -92.0 12.3 -17.2 -4.7 8.0 27 469 A S H > S+ 0 0 20 1,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.843 79.7 46.3 -57.8 -32.0 -15.2 -7.7 9.5 28 470 A D H 4 S+ 0 0 142 -3,-0.4 -1,-0.2 2,-0.2 -2,-0.1 0.776 110.8 52.7 -79.9 -25.9 -18.1 -8.4 11.9 29 471 A A H 4 S+ 0 0 27 -3,-0.4 -2,-0.2 1,-0.2 -1,-0.2 0.787 117.1 38.7 -74.8 -28.0 -20.6 -8.2 9.1 30 472 A L H < S+ 0 0 0 -4,-1.9 3,-0.5 20,-0.1 -2,-0.2 0.587 101.7 91.0-101.1 -13.1 -18.6 -10.7 7.1 31 473 A S < + 0 0 58 -4,-1.1 -3,-0.1 -5,-0.3 0, 0.0 -0.122 66.0 56.0 -69.9 175.0 -17.7 -12.9 10.1 32 474 A G S S+ 0 0 79 1,-0.1 -1,-0.2 0, 0.0 -4,-0.1 0.575 99.0 85.3 67.1 8.4 -20.0 -15.8 11.1 33 475 A T S S- 0 0 29 -3,-0.5 -1,-0.1 4,-0.0 -19,-0.1 -0.976 79.0-131.4-139.3 121.1 -19.3 -16.9 7.4 34 476 A P >> - 0 0 77 0, 0.0 4,-2.9 0, 0.0 3,-1.5 -0.345 24.1-113.8 -71.9 160.8 -16.2 -19.0 6.5 35 477 A W H 3> S+ 0 0 10 -24,-0.6 4,-2.2 1,-0.3 5,-0.3 0.933 112.1 64.4 -61.2 -56.5 -14.1 -18.0 3.5 36 478 A I H 34 S+ 0 0 44 1,-0.2 -1,-0.3 2,-0.2 4,-0.1 0.608 118.5 27.7 -34.2 -26.8 -15.0 -21.1 1.4 37 479 A E H X4 S+ 0 0 105 -3,-1.5 3,-0.9 2,-0.1 4,-0.3 0.723 110.4 66.0-113.0 -38.8 -18.6 -19.9 1.4 38 480 A L H >< S+ 0 0 1 -4,-2.9 3,-2.8 1,-0.2 -2,-0.2 0.925 97.0 58.6 -45.5 -60.1 -18.2 -16.1 1.7 39 481 A I T 3< S+ 0 0 4 -4,-2.2 -1,-0.2 1,-0.3 -3,-0.1 0.844 98.8 60.1 -41.1 -36.4 -16.5 -16.0 -1.7 40 482 A Y T < S+ 0 0 91 -3,-0.9 -1,-0.3 -5,-0.3 -2,-0.2 0.547 84.2 122.8 -74.8 -6.1 -19.7 -17.5 -3.2 41 483 A L < - 0 0 26 -3,-2.8 2,-0.2 -4,-0.3 -3,-0.0 -0.066 52.2-140.6 -50.1 155.3 -21.7 -14.5 -2.0 42 484 A D > - 0 0 107 1,-0.1 4,-2.8 0, 0.0 5,-0.1 -0.694 29.0-101.9-113.3 166.7 -23.8 -12.3 -4.2 43 485 A D H > S+ 0 0 66 -2,-0.2 4,-1.9 1,-0.2 5,-0.2 0.892 126.2 48.7 -55.4 -41.1 -24.3 -8.5 -4.3 44 486 A E H > S+ 0 0 139 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.892 108.8 52.9 -66.5 -40.9 -27.7 -9.1 -2.6 45 487 A T H > S+ 0 0 50 2,-0.2 4,-1.5 1,-0.2 -2,-0.2 0.941 106.9 54.4 -58.2 -45.0 -26.1 -11.3 0.0 46 488 A L H >X>S+ 0 0 0 -4,-2.8 5,-2.9 2,-0.2 4,-1.6 0.926 106.7 47.9 -59.5 -48.5 -23.6 -8.5 0.7 47 489 A E H 3<5S+ 0 0 77 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.870 114.1 48.9 -64.4 -27.9 -26.2 -5.8 1.4 48 490 A K H 3<5S+ 0 0 168 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.723 108.3 54.5 -78.6 -19.5 -28.0 -8.3 3.7 49 491 A K H <<5S- 0 0 51 -4,-1.5 -2,-0.2 -3,-0.5 -1,-0.2 0.811 130.8 -93.2 -74.4 -31.7 -24.6 -9.0 5.4 50 492 A G T <5S+ 0 0 26 -4,-1.6 2,-1.0 -5,-0.2 -3,-0.2 0.452 88.9 127.1 122.3 14.6 -24.1 -5.3 6.2 51 493 A V < + 0 0 0 -5,-2.9 6,-0.3 1,-0.2 -3,-0.1 -0.572 22.5 153.9-102.4 63.9 -22.1 -4.3 3.0 52 494 A L + 0 0 106 -2,-1.0 -1,-0.2 -5,-0.1 -5,-0.1 0.813 39.4 93.2 -72.2 -29.6 -24.4 -1.4 2.0 53 495 A A S > S- 0 0 41 -3,-0.2 4,-2.0 1,-0.1 5,-0.2 -0.357 71.3-140.0 -63.7 139.7 -21.8 0.7 0.1 54 496 A L H > S+ 0 0 135 2,-0.2 4,-2.3 1,-0.1 5,-0.2 0.909 102.6 49.2 -63.6 -44.1 -21.6 0.0 -3.7 55 497 A G H > S+ 0 0 42 2,-0.2 4,-2.1 1,-0.2 5,-0.2 0.969 110.6 49.5 -63.1 -59.5 -17.8 0.2 -3.7 56 498 A A H >> S+ 0 0 16 2,-0.2 4,-1.7 1,-0.2 3,-0.5 0.945 113.4 45.2 -33.2 -69.5 -17.3 -2.1 -0.8 57 499 A R H 3X S+ 0 0 28 -4,-2.0 4,-2.1 -6,-0.3 3,-0.4 0.886 111.3 51.6 -56.0 -45.7 -19.7 -4.8 -2.2 58 500 A R H 3X S+ 0 0 164 -4,-2.3 4,-1.6 1,-0.2 -1,-0.3 0.872 109.7 51.2 -57.5 -39.0 -18.2 -4.7 -5.7 59 501 A K H S+ 0 0 91 -4,-1.9 5,-1.5 1,-0.2 4,-1.3 0.777 112.8 54.6 -60.0 -28.6 -7.4 -20.6 -6.8 71 513 A K H <5S+ 0 0 44 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.922 107.4 49.0 -67.1 -45.5 -9.9 -22.9 -5.0 72 514 A E H <5S+ 0 0 146 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.620 116.6 43.8 -71.0 -12.1 -11.0 -24.3 -8.3 73 515 A R H <5S- 0 0 155 -4,-0.9 -1,-0.2 -5,-0.2 -2,-0.2 0.612 104.2-131.7-102.7 -19.9 -7.3 -24.8 -9.2 74 516 A D T <5 + 0 0 80 -4,-1.3 -3,-0.2 -3,-0.2 -4,-0.1 0.625 65.3 131.8 77.6 18.7 -6.4 -26.3 -5.8 75 517 A L < + 0 0 111 -5,-1.5 -4,-0.1 2,-0.1 2,-0.1 0.587 45.4 101.0 -76.1 -10.0 -3.3 -24.0 -5.4 76 518 A I S S- 0 0 5 -6,-0.7 2,-0.2 1,-0.1 -69,-0.1 -0.407 79.9-106.1 -79.7 152.9 -4.4 -23.1 -1.8 77 519 A D > - 0 0 86 -71,-0.3 3,-2.0 -2,-0.1 4,-0.5 -0.494 19.9-123.1 -79.4 147.5 -2.9 -24.7 1.3 78 520 A R T 3 S+ 0 0 147 1,-0.3 3,-0.4 -2,-0.2 -1,-0.1 0.678 108.3 70.6 -63.0 -15.4 -4.8 -27.3 3.3 79 521 A S T 3 S+ 0 0 58 1,-0.2 -1,-0.3 0, 0.0 -67,-0.0 0.645 85.5 66.3 -76.7 -16.7 -4.4 -25.0 6.3 80 522 A A < 0 0 0 -3,-2.0 -1,-0.2 -69,-0.1 -45,-0.2 0.840 360.0 360.0 -68.1 -34.9 -6.9 -22.5 4.8 81 523 A Y 0 0 129 -4,-0.5 -69,-0.1 -3,-0.4 -70,-0.0 -0.440 360.0 360.0 -68.7 360.0 -9.7 -25.0 5.2