==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 23-APR-12 4ESF . COMPND 2 MOLECULE: PADR-LIKE TRANSCRIPTIONAL REGULATOR; . SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; . AUTHOR G.FIBRIANSAH,A.T.KOVACS,O.P.KUIPERS,A.M.W.H.THUNNISSEN . 100 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7260.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 83 83.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 9.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 58 58.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A N 0 0 154 0, 0.0 4,-0.2 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 87.5 12.5 5.6 -11.8 2 4 A L > + 0 0 89 1,-0.1 4,-3.0 2,-0.1 5,-0.3 0.297 360.0 113.1-103.4 5.4 12.1 8.1 -8.9 3 5 A T H > S+ 0 0 76 1,-0.2 4,-2.4 2,-0.2 -1,-0.1 0.890 76.9 43.4 -52.4 -54.1 8.5 7.2 -8.1 4 6 A E H > S+ 0 0 138 1,-0.2 4,-0.8 2,-0.2 -1,-0.2 0.925 119.2 43.9 -61.2 -43.3 9.0 5.7 -4.6 5 7 A M H 4 S+ 0 0 171 1,-0.2 -1,-0.2 -4,-0.2 -2,-0.2 0.881 120.0 41.5 -67.8 -39.0 11.4 8.4 -3.5 6 8 A L H >X S+ 0 0 25 -4,-3.0 3,-2.0 1,-0.2 4,-1.1 0.725 96.5 80.4 -81.4 -23.3 9.3 11.2 -4.9 7 9 A K H >X S+ 0 0 131 -4,-2.4 3,-1.1 -5,-0.3 4,-0.6 0.917 89.9 51.0 -52.4 -54.8 6.0 9.8 -3.8 8 10 A G H 3< S+ 0 0 77 -4,-0.8 -1,-0.3 1,-0.2 -2,-0.1 0.434 119.6 37.3 -64.9 -0.9 6.3 11.0 -0.2 9 11 A S H <> S+ 0 0 28 -3,-2.0 4,-1.7 2,-0.1 -1,-0.2 0.395 91.8 87.9-123.9 -5.8 7.1 14.6 -1.4 10 12 A L H S+ 0 0 3 2,-0.2 4,-2.8 1,-0.2 -2,-0.2 0.876 107.0 53.5 -63.5 -42.2 3.9 19.1 -1.2 13 15 A C H X S+ 0 0 25 -4,-1.7 4,-2.3 2,-0.2 -1,-0.2 0.931 110.4 49.4 -59.5 -41.4 5.4 20.0 -4.6 14 16 A V H X S+ 0 0 0 -4,-2.3 4,-3.1 2,-0.2 5,-0.3 0.950 109.6 49.7 -62.4 -49.6 1.9 20.2 -5.9 15 17 A L H X S+ 0 0 1 -4,-2.4 4,-1.8 1,-0.2 -1,-0.2 0.912 110.6 51.9 -52.9 -44.7 0.7 22.5 -3.0 16 18 A E H X S+ 0 0 33 -4,-2.8 4,-0.8 2,-0.2 -1,-0.2 0.925 110.9 47.0 -60.3 -43.3 3.8 24.6 -3.7 17 19 A I H >X S+ 0 0 17 -4,-2.3 3,-1.1 1,-0.2 4,-0.6 0.946 112.0 49.3 -64.8 -47.3 2.8 24.9 -7.4 18 20 A I H >< S+ 0 0 2 -4,-3.1 3,-0.6 1,-0.3 54,-0.4 0.798 102.4 65.2 -61.9 -28.0 -0.8 25.7 -6.7 19 21 A S H 3< S+ 0 0 49 -4,-1.8 -1,-0.3 -5,-0.3 -2,-0.2 0.800 91.4 62.1 -64.2 -31.2 0.3 28.4 -4.2 20 22 A R H << S- 0 0 165 -3,-1.1 2,-0.2 -4,-0.8 -1,-0.2 0.775 124.2 -37.1 -72.5 -27.5 1.9 30.5 -6.9 21 23 A R S << S- 0 0 148 -3,-0.6 -1,-0.3 -4,-0.6 49,-0.1 -0.883 79.2 -59.7 175.3 158.9 -1.4 31.1 -8.7 22 24 A E + 0 0 54 -2,-0.2 2,-0.2 -3,-0.1 49,-0.2 -0.234 69.0 149.6 -47.1 133.1 -4.7 29.5 -9.7 23 25 A T B -A 70 0A 4 47,-2.1 47,-2.6 -5,-0.0 2,-0.3 -0.769 32.9-129.8-153.7-166.8 -4.0 26.5 -11.9 24 26 A Y >> - 0 0 52 -2,-0.2 4,-2.3 45,-0.2 3,-0.5 -0.981 36.6 -86.8-157.9 162.8 -5.2 23.1 -13.0 25 27 A G H 3> S+ 0 0 20 43,-0.3 4,-2.7 -2,-0.3 5,-0.2 0.808 118.8 49.4 -43.4 -50.9 -4.0 19.4 -13.4 26 28 A Y H 3> S+ 0 0 120 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.941 115.1 45.0 -60.2 -44.6 -2.6 19.6 -16.9 27 29 A E H <> S+ 0 0 54 -3,-0.5 4,-2.2 1,-0.2 -1,-0.2 0.861 111.8 51.8 -71.7 -33.5 -0.6 22.7 -16.1 28 30 A I H X S+ 0 0 0 -4,-2.3 4,-2.3 2,-0.2 -1,-0.2 0.944 110.0 50.2 -65.2 -45.9 0.6 21.3 -12.8 29 31 A T H X S+ 0 0 6 -4,-2.7 4,-2.4 -5,-0.2 -2,-0.2 0.942 111.3 47.4 -56.7 -47.3 1.8 18.1 -14.5 30 32 A R H X S+ 0 0 101 -4,-2.4 4,-3.0 1,-0.2 -1,-0.2 0.884 109.3 54.6 -66.5 -35.9 3.7 20.0 -17.2 31 33 A H H X S+ 0 0 77 -4,-2.2 4,-1.6 2,-0.2 -1,-0.2 0.921 109.9 46.5 -62.9 -41.6 5.3 22.2 -14.5 32 34 A L H X>S+ 0 0 0 -4,-2.3 5,-2.5 2,-0.2 4,-1.0 0.880 113.3 49.9 -66.2 -38.5 6.6 19.1 -12.7 33 35 A N H ><5S+ 0 0 31 -4,-2.4 3,-0.7 -5,-0.2 -2,-0.2 0.924 109.4 50.6 -63.7 -46.0 7.8 17.7 -16.0 34 36 A D H 3<5S+ 0 0 123 -4,-3.0 -2,-0.2 1,-0.2 -1,-0.2 0.800 104.7 58.7 -63.1 -31.5 9.6 20.9 -16.8 35 37 A L H 3<5S- 0 0 111 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.799 130.9 -93.5 -65.1 -30.1 11.2 20.8 -13.3 36 38 A G T <<5S+ 0 0 44 -4,-1.0 2,-1.3 -3,-0.7 -3,-0.2 0.392 95.1 117.2 127.3 3.2 12.7 17.4 -14.3 37 39 A F > < + 0 0 54 -5,-2.5 3,-1.8 1,-0.2 -3,-0.1 -0.550 33.0 162.8 -96.2 70.7 10.2 14.9 -13.0 38 40 A T T 3 + 0 0 109 -2,-1.3 -1,-0.2 1,-0.3 -5,-0.1 0.675 63.7 62.9 -68.8 -18.9 9.4 13.7 -16.5 39 41 A E T 3 S+ 0 0 105 -3,-0.2 2,-0.6 2,-0.1 -1,-0.3 0.492 75.9 108.0 -86.9 -3.7 7.7 10.5 -15.3 40 42 A V < - 0 0 10 -3,-1.8 2,-0.2 -11,-0.1 -7,-0.1 -0.663 53.0-170.4 -76.5 121.2 4.9 12.4 -13.6 41 43 A V >> - 0 0 86 -2,-0.6 3,-1.6 1,-0.0 4,-1.5 -0.693 36.4-101.4-110.0 164.3 1.7 12.0 -15.6 42 44 A E H 3> S+ 0 0 107 1,-0.3 4,-3.3 -2,-0.2 5,-0.1 0.774 117.6 60.1 -51.2 -39.0 -1.6 13.7 -15.3 43 45 A G H 3> S+ 0 0 43 2,-0.2 4,-1.9 1,-0.2 -1,-0.3 0.760 103.5 52.3 -66.4 -25.1 -3.3 10.8 -13.5 44 46 A T H <> S+ 0 0 54 -3,-1.6 4,-1.8 2,-0.2 -1,-0.2 0.919 113.2 43.0 -75.4 -45.1 -0.7 11.1 -10.7 45 47 A V H X S+ 0 0 0 -4,-1.5 4,-2.9 2,-0.2 -2,-0.2 0.920 111.4 55.5 -65.6 -43.9 -1.5 14.8 -10.3 46 48 A Y H X S+ 0 0 153 -4,-3.3 4,-2.2 1,-0.2 -2,-0.2 0.956 107.7 48.8 -50.0 -53.7 -5.2 14.1 -10.6 47 49 A T H X S+ 0 0 83 -4,-1.9 4,-2.0 1,-0.2 -1,-0.2 0.884 112.3 48.9 -57.9 -41.1 -5.1 11.6 -7.7 48 50 A I H X S+ 0 0 14 -4,-1.8 4,-2.3 2,-0.2 -1,-0.2 0.920 107.8 53.6 -63.2 -45.6 -3.1 14.2 -5.6 49 51 A L H X S+ 0 0 4 -4,-2.9 4,-1.7 1,-0.2 -2,-0.2 0.874 107.8 51.7 -58.7 -39.6 -5.6 17.0 -6.4 50 52 A V H X S+ 0 0 63 -4,-2.2 4,-2.2 -5,-0.2 5,-0.2 0.941 109.0 49.9 -60.7 -48.9 -8.4 14.7 -5.1 51 53 A R H X S+ 0 0 93 -4,-2.0 4,-1.5 1,-0.2 -2,-0.2 0.883 110.3 50.8 -56.5 -39.6 -6.5 14.0 -1.9 52 54 A L H <>S+ 0 0 0 -4,-2.3 5,-2.5 1,-0.2 6,-0.5 0.843 108.9 52.1 -69.7 -32.6 -6.0 17.8 -1.4 53 55 A E H ><5S+ 0 0 85 -4,-1.7 3,-1.0 -5,-0.2 -2,-0.2 0.904 108.5 48.3 -70.6 -41.3 -9.7 18.4 -2.0 54 56 A K H 3<5S+ 0 0 138 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.816 110.5 52.5 -69.4 -28.9 -10.9 15.9 0.7 55 57 A K T 3<5S- 0 0 81 -4,-1.5 -1,-0.3 -5,-0.2 -2,-0.2 0.460 112.4-125.6 -82.2 -2.8 -8.4 17.4 3.2 56 58 A K T < 5 + 0 0 158 -3,-1.0 19,-0.3 -4,-0.1 20,-0.2 0.850 69.5 131.8 62.9 40.2 -9.9 20.8 2.4 57 59 A L < + 0 0 10 -5,-2.5 16,-1.5 18,-0.2 2,-0.4 0.488 58.6 51.7 -97.3 -7.2 -6.6 22.4 1.4 58 60 A V E S-B 72 0A 12 -6,-0.5 2,-0.4 14,-0.2 14,-0.3 -0.985 70.3-131.6-137.5 140.3 -7.7 24.0 -1.9 59 61 A N E -B 71 0A 87 12,-2.5 12,-1.8 -2,-0.4 2,-0.3 -0.759 30.3-151.8 -85.2 138.0 -10.5 26.3 -3.2 60 62 A I E +B 70 0A 51 -2,-0.4 2,-0.3 10,-0.2 10,-0.2 -0.863 16.3 178.9-115.0 147.9 -12.1 25.0 -6.4 61 63 A E E -B 69 0A 104 8,-1.4 8,-3.3 -2,-0.3 2,-0.8 -0.956 25.3-139.8-149.7 122.0 -13.8 26.8 -9.2 62 64 A K E +B 68 0A 151 -2,-0.3 6,-0.2 6,-0.2 -2,-0.0 -0.779 42.0 170.2 -80.0 109.9 -15.3 25.6 -12.4 63 65 A K E B 67 0A 80 4,-1.9 4,-1.0 -2,-0.8 -2,-0.0 -0.697 360.0 360.0-119.3 167.1 -14.2 28.2 -15.0 64 66 A P 0 0 159 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.219 360.0 360.0 -90.1 360.0 -14.2 28.7 -18.8 65 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 66 72 A P 0 0 169 0, 0.0 2,-0.4 0, 0.0 -4,-0.0 0.000 360.0 360.0 360.0 102.5 -15.5 22.0 -17.8 67 73 A R E - B 0 63A 126 -4,-1.0 -4,-1.9 -43,-0.0 2,-0.5 -0.820 360.0-135.1-111.1 141.7 -12.3 22.5 -15.8 68 74 A K E - B 0 62A 67 -2,-0.4 2,-0.5 -6,-0.2 -43,-0.3 -0.759 18.9-152.2 -87.9 125.2 -11.7 22.8 -12.1 69 75 A F E - B 0 61A 25 -8,-3.3 -8,-1.4 -2,-0.5 2,-0.4 -0.894 11.9-154.9-100.1 131.6 -9.4 25.6 -11.1 70 76 A Y E +AB 23 60A 10 -47,-2.6 -47,-2.1 -2,-0.5 2,-0.3 -0.861 21.3 160.2-109.8 134.9 -7.4 25.1 -7.9 71 77 A S E - B 0 59A 35 -12,-1.8 -12,-2.5 -2,-0.4 2,-0.3 -0.937 43.0 -92.5-138.6 167.2 -5.9 27.7 -5.6 72 78 A L E - B 0 58A 11 -54,-0.4 -14,-0.2 -2,-0.3 2,-0.2 -0.591 30.4-159.3 -81.8 136.2 -4.8 27.4 -1.9 73 79 A N > - 0 0 30 -16,-1.5 4,-2.1 -2,-0.3 5,-0.2 -0.401 45.1 -85.3 -91.9-173.5 -7.1 28.2 1.0 74 80 A E H > S+ 0 0 108 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.886 130.4 51.7 -66.1 -41.2 -5.8 29.1 4.4 75 81 A A H > S+ 0 0 45 -19,-0.3 4,-3.3 2,-0.2 -1,-0.2 0.926 108.7 54.1 -55.7 -44.0 -5.5 25.4 5.5 76 82 A G H > S+ 0 0 0 -19,-0.2 4,-2.7 -20,-0.2 -2,-0.2 0.916 108.8 45.8 -60.9 -45.8 -3.5 24.8 2.3 77 83 A R H X S+ 0 0 115 -4,-2.1 4,-2.2 2,-0.2 -1,-0.2 0.942 113.7 50.3 -61.1 -46.4 -1.0 27.5 3.0 78 84 A Q H X S+ 0 0 102 -4,-2.6 4,-1.7 1,-0.2 -2,-0.2 0.940 112.8 46.8 -52.9 -48.9 -0.7 26.3 6.6 79 85 A E H X S+ 0 0 61 -4,-3.3 4,-2.2 1,-0.2 -2,-0.2 0.885 108.8 53.7 -66.4 -40.0 -0.1 22.7 5.3 80 86 A L H X S+ 0 0 18 -4,-2.7 4,-2.1 1,-0.2 -1,-0.2 0.871 106.7 53.6 -60.2 -41.9 2.5 23.8 2.7 81 87 A E H X S+ 0 0 127 -4,-2.2 4,-1.8 1,-0.2 -1,-0.2 0.923 109.2 48.2 -59.4 -41.5 4.4 25.6 5.4 82 88 A L H X S+ 0 0 84 -4,-1.7 4,-2.7 1,-0.2 -2,-0.2 0.878 108.2 55.3 -69.3 -35.4 4.5 22.3 7.4 83 89 A F H X S+ 0 0 24 -4,-2.2 4,-3.2 1,-0.2 -1,-0.2 0.927 108.4 46.7 -61.4 -47.2 5.6 20.4 4.4 84 90 A W H X S+ 0 0 86 -4,-2.1 4,-2.9 2,-0.2 -1,-0.2 0.866 111.0 52.0 -66.8 -35.9 8.6 22.6 3.8 85 91 A K H X S+ 0 0 138 -4,-1.8 4,-2.1 2,-0.2 -2,-0.2 0.971 113.3 45.3 -64.6 -48.3 9.6 22.4 7.5 86 92 A K H X S+ 0 0 109 -4,-2.7 4,-2.8 1,-0.2 5,-0.3 0.945 113.2 50.5 -55.0 -48.6 9.4 18.6 7.3 87 93 A W H X S+ 0 0 106 -4,-3.2 4,-3.0 1,-0.2 5,-0.4 0.938 109.4 50.4 -55.6 -49.6 11.3 18.6 4.0 88 94 A D H X S+ 0 0 99 -4,-2.9 4,-1.9 1,-0.2 -1,-0.2 0.885 114.2 44.9 -58.5 -41.6 14.1 20.9 5.4 89 95 A F H X S+ 0 0 124 -4,-2.1 4,-1.7 -5,-0.2 -2,-0.2 0.968 116.5 43.2 -65.8 -55.6 14.5 18.6 8.4 90 96 A V H X S+ 0 0 71 -4,-2.8 4,-2.1 -5,-0.2 -2,-0.2 0.924 117.2 45.7 -60.1 -48.0 14.4 15.3 6.5 91 97 A S H X S+ 0 0 21 -4,-3.0 4,-2.9 -5,-0.3 5,-0.2 0.919 109.8 53.6 -66.4 -43.5 16.7 16.4 3.7 92 98 A S H X S+ 0 0 47 -4,-1.9 4,-1.4 -5,-0.4 -1,-0.2 0.868 111.8 46.6 -55.6 -35.4 19.3 18.1 6.0 93 99 A K H X S+ 0 0 106 -4,-1.7 4,-1.5 2,-0.2 -1,-0.2 0.874 111.4 49.3 -81.4 -36.3 19.6 14.9 8.0 94 100 A I H X S+ 0 0 99 -4,-2.1 4,-2.4 1,-0.2 -2,-0.2 0.918 112.4 49.1 -64.4 -42.1 19.9 12.7 4.9 95 101 A N H X S+ 0 0 71 -4,-2.9 4,-2.2 2,-0.2 -2,-0.2 0.805 105.4 57.3 -64.5 -30.4 22.6 15.1 3.6 96 102 A V H < S+ 0 0 95 -4,-1.4 -1,-0.2 -5,-0.2 -2,-0.2 0.884 110.9 45.7 -64.5 -35.4 24.4 14.9 7.0 97 103 A L H >< S+ 0 0 136 -4,-1.5 3,-1.3 1,-0.2 -2,-0.2 0.906 111.5 49.3 -73.3 -44.8 24.5 11.2 6.4 98 104 A K H >< S+ 0 0 132 -4,-2.4 3,-3.3 1,-0.2 -2,-0.2 0.875 94.5 77.2 -58.9 -37.9 25.6 11.5 2.8 99 105 A S T 3< S+ 0 0 95 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.609 88.1 58.7 -55.6 -11.6 28.4 13.9 3.9 100 106 A S T < 0 0 112 -3,-1.3 -1,-0.3 -4,-0.2 -2,-0.2 0.216 360.0 360.0-110.5 13.8 30.4 10.9 5.1 101 107 A N < 0 0 191 -3,-3.3 -3,-0.1 0, 0.0 -4,-0.0 -0.545 360.0 360.0-169.2 360.0 30.5 9.2 1.8