==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-MAY-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 09-MAY-12 4F42 . COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR Q.QU,T.JIANG . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5111.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 75.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 17 20.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 47.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A G 0 0 92 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -55.3 13.7 2.2 16.8 2 3 A N - 0 0 85 1,-0.1 61,-2.9 2,-0.0 62,-0.3 -0.615 360.0-125.9 -82.7 126.6 11.5 4.1 19.3 3 4 A L B > -A 62 0A 49 -2,-0.4 3,-1.0 59,-0.3 4,-0.4 -0.447 15.1-131.8 -60.8 137.7 7.8 4.6 18.4 4 5 A Y G > S+ 0 0 6 57,-2.6 3,-2.0 1,-0.2 58,-0.1 0.935 105.9 60.1 -54.6 -48.1 6.8 8.3 18.5 5 6 A S G 3 S+ 0 0 64 56,-0.5 -1,-0.2 51,-0.3 57,-0.1 0.629 97.7 60.4 -58.4 -17.7 3.7 7.4 20.7 6 7 A S G < S+ 0 0 88 -3,-1.0 -1,-0.3 2,-0.1 -2,-0.2 0.578 78.6 108.7 -88.4 -14.7 6.0 5.9 23.4 7 8 A L S < S- 0 0 15 -3,-2.0 2,-0.0 -4,-0.4 -3,-0.0 -0.270 83.4 -95.8 -58.7 147.2 7.8 9.2 24.0 8 9 A P >> - 0 0 64 0, 0.0 4,-2.2 0, 0.0 3,-1.1 -0.398 31.9-113.1 -64.9 147.4 7.0 10.9 27.4 9 10 A L H 3> S+ 0 0 94 1,-0.3 4,-2.6 2,-0.2 5,-0.2 0.847 117.1 62.3 -43.9 -39.5 4.3 13.6 27.2 10 11 A T H 3> S+ 0 0 91 1,-0.2 4,-0.7 2,-0.2 -1,-0.3 0.872 107.4 40.8 -60.4 -41.3 7.0 16.1 28.1 11 12 A K H X> S+ 0 0 110 -3,-1.1 4,-2.2 2,-0.2 3,-0.6 0.906 113.3 54.5 -69.9 -45.0 9.0 15.3 24.9 12 13 A R H 3X S+ 0 0 57 -4,-2.2 4,-2.8 1,-0.2 -2,-0.2 0.855 104.1 54.5 -61.4 -35.3 5.9 15.2 22.7 13 14 A E H 3X S+ 0 0 91 -4,-2.6 4,-1.7 -5,-0.2 -1,-0.2 0.777 106.7 51.9 -70.3 -24.9 4.8 18.6 23.9 14 15 A E H < S+ 0 0 155 -4,-1.7 3,-1.2 1,-0.2 -1,-0.2 0.891 108.1 49.4 -61.3 -41.1 5.3 23.3 20.1 18 19 A L H 3< S+ 0 0 53 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.692 105.3 58.2 -74.9 -20.0 7.8 23.4 17.3 19 20 A L T 3<>S+ 0 0 1 -4,-1.1 5,-1.5 -3,-0.4 -1,-0.3 0.212 82.7 128.2 -94.9 14.0 5.2 22.2 14.8 20 21 A N T X 5 + 0 0 97 -3,-1.2 3,-1.4 3,-0.2 2,-0.3 -0.011 55.7 25.3 -61.1 170.4 2.9 25.2 15.5 21 22 A G T 3 5S- 0 0 53 1,-0.2 3,-0.2 2,-0.1 4,-0.1 -0.585 134.3 -33.3 72.3-129.9 1.5 27.6 12.9 22 23 A D T >>5S+ 0 0 99 -2,-0.3 4,-1.8 1,-0.1 3,-0.7 0.383 111.8 100.9-102.7 1.3 1.3 25.7 9.6 23 24 A T H <>5S+ 0 0 14 -3,-1.4 4,-2.7 1,-0.3 5,-0.2 0.865 78.8 57.3 -56.8 -37.5 4.4 23.5 10.1 24 25 A W H 3> S+ 0 0 68 -3,-0.7 4,-2.2 2,-0.2 -1,-0.2 0.925 110.0 47.7 -62.9 -46.0 0.3 20.9 7.7 26 27 A H H X S+ 0 0 106 -4,-1.8 4,-1.7 1,-0.2 -2,-0.2 0.933 115.1 46.6 -61.1 -45.5 3.6 20.8 5.8 27 28 A L H X S+ 0 0 0 -4,-2.7 4,-2.2 2,-0.2 -2,-0.2 0.911 108.4 54.1 -62.4 -46.6 4.7 17.8 7.8 28 29 A A H X>S+ 0 0 0 -4,-2.8 5,-2.2 1,-0.2 4,-0.6 0.911 105.3 55.0 -56.8 -43.1 1.4 16.0 7.4 29 30 A G H ><5S+ 0 0 39 -4,-2.2 3,-1.2 1,-0.2 -1,-0.2 0.928 109.3 47.4 -51.2 -49.3 1.8 16.4 3.6 30 31 A E H 3<5S+ 0 0 77 -4,-1.7 -1,-0.2 1,-0.3 -2,-0.2 0.821 106.0 57.8 -62.9 -35.2 5.2 14.7 3.8 31 32 A L H 3<5S- 0 0 39 -4,-2.2 -1,-0.3 -5,-0.1 -2,-0.2 0.531 126.9-100.6 -76.8 -4.7 3.7 11.9 6.0 32 33 A G T <<5S+ 0 0 58 -3,-1.2 2,-0.4 -4,-0.6 -3,-0.2 0.615 71.7 145.4 100.7 16.2 1.3 11.2 3.1 33 34 A Y < - 0 0 24 -5,-2.2 -1,-0.3 -6,-0.1 -2,-0.1 -0.706 45.7-126.1 -85.9 132.7 -1.9 12.9 4.2 34 35 A Q > - 0 0 131 -2,-0.4 4,-2.6 1,-0.1 3,-0.2 -0.322 28.4-104.5 -72.5 159.7 -4.1 14.5 1.5 35 36 A P H > S+ 0 0 65 0, 0.0 4,-2.7 0, 0.0 5,-0.1 0.860 120.5 45.9 -53.9 -43.1 -5.2 18.2 1.9 36 37 A E H > S+ 0 0 136 2,-0.2 4,-1.3 1,-0.2 5,-0.1 0.816 110.6 53.4 -73.1 -33.2 -8.8 17.4 3.0 37 38 A H H > S+ 0 0 89 -3,-0.2 4,-0.5 2,-0.2 3,-0.3 0.931 111.6 46.7 -61.4 -48.6 -7.6 14.8 5.4 38 39 A I H >< S+ 0 0 11 -4,-2.6 3,-2.1 1,-0.2 4,-0.5 0.943 109.0 54.2 -56.6 -51.3 -5.3 17.5 6.9 39 40 A D H >< S+ 0 0 67 -4,-2.7 3,-1.1 1,-0.3 4,-0.3 0.803 97.7 66.6 -53.6 -31.1 -8.2 19.9 7.0 40 41 A S H >< S+ 0 0 56 -4,-1.3 3,-0.7 -3,-0.3 -1,-0.3 0.743 95.4 56.3 -62.6 -24.0 -10.2 17.3 9.0 41 42 A F G X< S+ 0 0 18 -3,-2.1 3,-1.7 -4,-0.5 -1,-0.2 0.622 86.2 77.8 -85.1 -13.6 -7.7 17.8 11.9 42 43 A T G < S+ 0 0 67 -3,-1.1 -1,-0.2 -4,-0.5 -2,-0.2 0.661 83.3 67.8 -68.6 -15.2 -8.4 21.5 12.1 43 44 A H G < S+ 0 0 157 -3,-0.7 -1,-0.3 -4,-0.3 -2,-0.2 0.572 86.5 89.0 -77.6 -12.0 -11.7 20.5 13.9 44 45 A E S < S- 0 0 105 -3,-1.7 4,-0.1 1,-0.1 -3,-0.0 -0.479 84.9-125.5 -84.8 157.1 -9.7 19.3 16.8 45 46 A A S S+ 0 0 102 1,-0.3 -1,-0.1 -2,-0.1 -4,-0.0 0.892 111.5 29.4 -64.0 -41.7 -8.6 21.5 19.8 46 47 A C S > S+ 0 0 58 1,-0.2 4,-2.7 2,-0.1 -1,-0.3 -0.833 70.9 179.1-121.0 91.1 -5.0 20.4 19.1 47 48 A P H > S+ 0 0 31 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.895 82.9 49.6 -60.5 -42.3 -4.6 19.6 15.4 48 49 A V H > S+ 0 0 17 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.959 113.8 44.9 -59.6 -53.6 -0.9 18.7 15.7 49 50 A R H > S+ 0 0 88 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.895 113.9 50.6 -57.3 -43.6 -1.5 16.4 18.6 50 51 A A H X S+ 0 0 23 -4,-2.7 4,-1.7 2,-0.2 -1,-0.2 0.889 111.3 48.7 -60.7 -41.8 -4.5 14.8 16.8 51 52 A L H X S+ 0 0 0 -4,-2.4 4,-3.3 1,-0.2 5,-0.2 0.945 113.6 44.7 -63.6 -51.7 -2.4 14.3 13.6 52 53 A L H X S+ 0 0 2 -4,-2.5 4,-2.8 1,-0.2 -1,-0.2 0.773 110.8 54.1 -67.5 -30.3 0.5 12.7 15.4 53 54 A A H < S+ 0 0 71 -4,-2.0 4,-0.3 -5,-0.2 -1,-0.2 0.866 114.1 42.8 -68.0 -39.9 -1.8 10.5 17.5 54 55 A S H >< S+ 0 0 48 -4,-1.7 3,-1.5 2,-0.2 4,-0.4 0.974 119.7 41.5 -67.0 -58.7 -3.4 9.3 14.2 55 56 A W H >< S+ 0 0 12 -4,-3.3 3,-1.8 1,-0.3 -2,-0.2 0.921 109.3 61.0 -51.0 -49.5 -0.1 8.9 12.4 56 57 A G T 3< S+ 0 0 6 -4,-2.8 -51,-0.3 1,-0.3 -1,-0.3 0.563 84.5 80.0 -59.4 -12.6 1.5 7.4 15.5 57 58 A A T < S+ 0 0 86 -3,-1.5 -1,-0.3 -4,-0.3 -2,-0.2 0.826 78.4 82.6 -64.9 -34.2 -1.0 4.5 15.4 58 59 A Q S X S- 0 0 92 -3,-1.8 3,-0.7 -4,-0.4 -3,-0.0 -0.216 85.1-124.5 -68.6 162.6 1.0 2.7 12.7 59 60 A D T 3 S+ 0 0 142 1,-0.2 -1,-0.1 -56,-0.1 -3,-0.1 0.664 109.1 57.8 -83.8 -16.8 4.0 0.5 13.6 60 61 A S T 3 S+ 0 0 84 1,-0.1 2,-1.6 2,-0.1 -1,-0.2 0.241 74.6 108.7 -94.7 10.7 6.4 2.5 11.3 61 62 A A < + 0 0 0 -3,-0.7 -57,-2.6 -5,-0.2 -56,-0.5 -0.553 48.6 155.3 -87.7 70.7 5.6 5.7 13.1 62 63 A T B > -A 3 0A 21 -2,-1.6 4,-1.9 -59,-0.3 -59,-0.3 -0.533 58.5-112.1 -91.5 161.4 9.0 6.0 14.8 63 64 A L H > S+ 0 0 37 -61,-2.9 4,-3.1 1,-0.2 5,-0.2 0.916 120.3 52.4 -53.9 -44.7 10.8 9.2 16.1 64 65 A D H > S+ 0 0 81 -62,-0.3 4,-3.2 1,-0.2 -1,-0.2 0.856 105.6 53.2 -64.8 -36.9 13.4 8.7 13.3 65 66 A A H > S+ 0 0 31 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.879 112.1 46.7 -61.2 -39.7 10.7 8.5 10.7 66 67 A L H X S+ 0 0 0 -4,-1.9 4,-1.9 2,-0.2 -2,-0.2 0.953 112.6 47.8 -65.8 -50.8 9.3 11.7 12.0 67 68 A L H X S+ 0 0 31 -4,-3.1 4,-2.1 1,-0.2 -2,-0.2 0.909 111.1 52.2 -56.2 -44.6 12.8 13.3 12.1 68 69 A A H X S+ 0 0 18 -4,-3.2 4,-1.8 1,-0.2 -1,-0.2 0.914 107.1 52.8 -55.7 -47.2 13.4 12.1 8.5 69 70 A A H X S+ 0 0 3 -4,-2.1 4,-1.2 1,-0.2 -1,-0.2 0.856 108.3 51.7 -56.3 -38.0 10.1 13.7 7.4 70 71 A L H <>S+ 0 0 0 -4,-1.9 5,-2.8 1,-0.2 3,-0.3 0.893 106.3 51.3 -71.2 -43.6 11.2 17.0 8.9 71 72 A R H ><5S+ 0 0 138 -4,-2.1 3,-1.6 3,-0.2 5,-0.3 0.891 107.4 57.1 -54.0 -40.1 14.6 17.0 7.1 72 73 A R H 3<5S+ 0 0 149 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.786 103.5 49.4 -70.0 -31.0 12.6 16.4 3.9 73 74 A I T 3<5S- 0 0 39 -4,-1.2 -1,-0.3 -3,-0.3 -2,-0.2 0.131 123.9-106.4 -87.2 19.4 10.4 19.5 4.2 74 75 A Q T < 5S+ 0 0 166 -3,-1.6 -3,-0.2 1,-0.1 3,-0.2 0.849 85.6 126.3 57.3 38.7 13.7 21.4 4.9 75 76 A R >>< + 0 0 70 -5,-2.8 4,-1.1 1,-0.1 3,-1.0 -0.318 12.1 136.1-117.4 48.5 13.0 21.8 8.6 76 77 A A H 3> + 0 0 40 -5,-0.3 4,-3.3 1,-0.2 5,-0.2 0.779 64.1 73.8 -61.2 -26.0 16.3 20.3 9.9 77 78 A D H 3> S+ 0 0 86 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.871 96.5 48.0 -54.5 -38.7 16.3 23.3 12.3 78 79 A I H <> S+ 0 0 2 -3,-1.0 4,-2.0 2,-0.2 -1,-0.2 0.896 111.5 49.7 -68.2 -40.1 13.5 21.5 14.2 79 80 A V H X S+ 0 0 20 -4,-1.1 4,-1.6 2,-0.2 -2,-0.2 0.936 112.9 46.9 -63.1 -45.7 15.5 18.3 14.2 80 81 A E H X S+ 0 0 137 -4,-3.3 4,-0.5 1,-0.2 -2,-0.2 0.925 112.4 50.6 -58.8 -46.6 18.6 20.2 15.5 81 82 A S H < S+ 0 0 66 -4,-2.4 3,-0.3 1,-0.2 -1,-0.2 0.821 111.8 46.2 -64.0 -35.2 16.5 21.9 18.2 82 83 A L H < S+ 0 0 40 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.758 111.4 51.5 -79.1 -27.8 15.0 18.6 19.4 83 84 A C H < 0 0 91 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.488 360.0 360.0 -86.1 -4.4 18.3 16.8 19.5 84 85 A S < 0 0 145 -4,-0.5 -3,-0.0 -3,-0.3 -4,-0.0 -0.408 360.0 360.0 -67.2 360.0 19.9 19.7 21.5