==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 13-JUL-00 1FAF . COMPND 2 MOLECULE: LARGE T ANTIGEN; . SOURCE 2 ORGANISM_SCIENTIFIC: MURINE POLYOMAVIRUS; . AUTHOR M.V.BERJANSKII,M.I.RILEY,A.XIE,V.SEMENCHENKO,W.R.FOLK, . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6649.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 69.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 50.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 214 0, 0.0 2,-0.9 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 171.2 -17.5 3.0 -2.5 2 2 A D - 0 0 133 1,-0.1 2,-0.9 2,-0.0 0, 0.0 -0.641 360.0-174.7 -78.3 104.3 -15.5 4.9 0.1 3 3 A R + 0 0 186 -2,-0.9 2,-0.4 58,-0.0 -1,-0.1 -0.810 22.5 143.4-104.3 94.0 -12.0 3.4 -0.0 4 4 A V - 0 0 98 -2,-0.9 2,-0.3 57,-0.0 54,-0.0 -0.979 35.4-146.9-137.3 124.3 -9.9 4.9 2.8 5 5 A L - 0 0 38 -2,-0.4 2,-0.1 53,-0.1 -2,-0.0 -0.619 14.1-140.0 -89.5 145.9 -7.3 3.2 4.9 6 6 A S > - 0 0 66 -2,-0.3 4,-3.1 1,-0.0 5,-0.4 -0.176 40.1 -82.1 -90.2-172.9 -6.6 4.1 8.5 7 7 A R H > S+ 0 0 204 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.890 130.8 53.1 -58.8 -40.9 -3.4 4.4 10.4 8 8 A A H > S+ 0 0 73 2,-0.2 4,-1.1 3,-0.2 -1,-0.2 0.872 115.0 40.3 -63.1 -39.2 -3.3 0.6 10.9 9 9 A D H > S+ 0 0 67 2,-0.2 4,-1.5 1,-0.1 3,-0.2 0.956 118.3 43.9 -75.8 -52.9 -3.7 0.0 7.1 10 10 A K H X S+ 0 0 67 -4,-3.1 4,-1.1 1,-0.2 -2,-0.2 0.862 113.7 53.6 -60.4 -34.5 -1.4 2.8 5.8 11 11 A E H X S+ 0 0 56 -4,-2.3 4,-1.7 -5,-0.4 -1,-0.2 0.856 103.3 56.4 -67.7 -34.2 1.1 1.8 8.5 12 12 A R H X S+ 0 0 116 -4,-1.1 4,-1.5 1,-0.2 -1,-0.2 0.842 101.5 57.4 -65.3 -32.8 0.9 -1.8 7.2 13 13 A L H X S+ 0 0 0 -4,-1.5 4,-0.8 1,-0.2 -1,-0.2 0.841 104.9 51.8 -65.7 -33.9 1.9 -0.5 3.7 14 14 A L H X>S+ 0 0 8 -4,-1.1 5,-1.3 -3,-0.2 4,-0.6 0.890 103.0 57.2 -70.0 -41.4 5.0 1.0 5.3 15 15 A E H ><5S+ 0 0 101 -4,-1.7 3,-0.7 1,-0.3 -1,-0.2 0.888 111.4 42.7 -57.3 -41.3 6.1 -2.3 6.9 16 16 A L H 3<5S+ 0 0 26 -4,-1.5 -1,-0.3 1,-0.2 -2,-0.2 0.680 110.5 58.0 -79.1 -18.4 6.1 -4.0 3.5 17 17 A L H 3<5S- 0 0 0 -4,-0.8 -1,-0.2 -3,-0.3 -2,-0.2 0.472 97.8-136.2 -88.5 -4.3 7.8 -1.0 1.9 18 18 A K T <<5 + 0 0 147 -3,-0.7 -3,-0.2 -4,-0.6 -4,-0.1 0.747 66.3 130.2 54.3 19.3 10.8 -1.2 4.3 19 19 A L < - 0 0 14 -5,-1.3 -1,-0.2 -6,-0.2 -2,-0.2 -0.923 59.4-125.6-109.9 110.3 10.2 2.5 4.4 20 20 A P - 0 0 82 0, 0.0 3,-0.2 0, 0.0 -1,-0.0 0.129 15.0-120.1 -46.8 167.2 10.1 4.0 8.0 21 21 A R S S+ 0 0 173 1,-0.2 3,-0.2 2,-0.1 -6,-0.0 0.451 104.5 73.8 -90.4 -3.8 7.2 6.1 9.2 22 22 A Q S S+ 0 0 191 1,-0.2 -1,-0.2 3,-0.0 -3,-0.0 0.805 102.4 38.4 -79.1 -31.4 9.5 9.1 9.9 23 23 A L S > S+ 0 0 54 -3,-0.2 3,-1.8 2,-0.0 2,-0.4 0.266 82.5 142.6-101.4 10.1 9.9 9.9 6.2 24 24 A W T 3 + 0 0 77 1,-0.2 3,-0.1 -3,-0.2 -3,-0.1 -0.342 58.8 48.0 -55.7 108.3 6.3 9.1 5.4 25 25 A G T 3 S+ 0 0 36 -2,-0.4 2,-1.4 1,-0.1 -1,-0.2 0.058 70.8 110.5 148.8 -29.7 5.3 11.7 2.8 26 26 A D X> - 0 0 90 -3,-1.8 4,-2.3 1,-0.2 3,-1.1 -0.612 48.1-165.2 -78.7 92.7 8.1 11.7 0.2 27 27 A F H 3> S+ 0 0 49 -2,-1.4 4,-2.7 1,-0.3 5,-0.3 0.853 88.0 57.3 -43.9 -43.3 6.4 10.1 -2.9 28 28 A G H 3> S+ 0 0 37 1,-0.2 4,-1.3 2,-0.2 -1,-0.3 0.892 111.2 41.1 -57.9 -42.5 9.8 9.6 -4.4 29 29 A R H <> S+ 0 0 161 -3,-1.1 4,-2.1 2,-0.2 5,-0.2 0.954 116.4 46.6 -71.5 -52.9 11.0 7.5 -1.5 30 30 A M H X S+ 0 0 0 -4,-2.3 4,-2.4 1,-0.2 -2,-0.2 0.923 114.7 47.2 -56.7 -47.2 7.8 5.5 -0.9 31 31 A Q H X S+ 0 0 76 -4,-2.7 4,-2.3 -5,-0.3 -1,-0.2 0.876 109.8 54.5 -63.0 -35.9 7.4 4.7 -4.6 32 32 A Q H X S+ 0 0 142 -4,-1.3 4,-1.5 -5,-0.3 -1,-0.2 0.872 113.1 42.2 -63.9 -37.1 11.1 3.7 -4.7 33 33 A A H X S+ 0 0 7 -4,-2.1 4,-1.4 2,-0.2 -2,-0.2 0.780 110.9 56.6 -79.4 -29.3 10.4 1.3 -1.9 34 34 A Y H X S+ 0 0 19 -4,-2.4 4,-1.6 -5,-0.2 -2,-0.2 0.895 108.6 46.5 -69.0 -41.1 7.1 0.1 -3.4 35 35 A K H X S+ 0 0 146 -4,-2.3 4,-2.2 2,-0.2 5,-0.2 0.958 112.9 47.1 -66.1 -52.6 8.8 -0.9 -6.7 36 36 A Q H X S+ 0 0 104 -4,-1.5 4,-0.6 1,-0.3 -1,-0.2 0.813 118.6 43.9 -59.6 -29.8 11.7 -2.7 -5.0 37 37 A Q H X S+ 0 0 5 -4,-1.4 4,-0.9 2,-0.2 -1,-0.3 0.721 110.3 55.1 -86.6 -23.7 9.2 -4.4 -2.8 38 38 A S H < S+ 0 0 20 -4,-1.6 4,-0.3 2,-0.2 -2,-0.2 0.801 106.2 51.5 -77.5 -30.8 6.8 -5.1 -5.7 39 39 A L H < S+ 0 0 107 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.751 111.9 46.2 -77.8 -24.8 9.5 -6.9 -7.7 40 40 A L H < S+ 0 0 77 -4,-0.6 -1,-0.2 -5,-0.2 -2,-0.2 0.681 112.4 50.2 -90.0 -18.9 10.4 -9.2 -4.7 41 41 A L S < S+ 0 0 13 -4,-0.9 11,-0.3 6,-0.1 -2,-0.2 0.464 84.4 118.2 -94.8 -3.6 6.7 -9.9 -4.0 42 42 A H S > S- 0 0 81 -4,-0.3 3,-2.7 1,-0.1 7,-0.1 -0.419 74.3-123.4 -66.6 134.6 6.0 -10.8 -7.6 43 43 A P G > S+ 0 0 70 0, 0.0 3,-1.6 0, 0.0 4,-0.5 0.869 113.2 53.4 -43.9 -48.8 4.9 -14.5 -8.1 44 44 A D G 3 S+ 0 0 137 1,-0.3 -2,-0.1 2,-0.1 -5,-0.0 0.637 108.6 52.9 -65.4 -12.8 7.8 -15.2 -10.6 45 45 A K G < S- 0 0 124 -3,-2.7 -1,-0.3 2,-0.0 -3,-0.1 -0.059 129.6 -88.2-112.5 30.9 10.1 -13.9 -7.9 46 46 A G S < S+ 0 0 64 -3,-1.6 2,-0.3 1,-0.2 -2,-0.1 0.966 80.9 122.0 62.4 90.3 8.9 -16.1 -5.1 47 47 A G - 0 0 40 -4,-0.5 2,-0.2 -6,-0.1 -1,-0.2 -0.985 58.4 -93.8-169.7 165.2 6.0 -14.4 -3.3 48 48 A S > - 0 0 70 -2,-0.3 4,-1.2 1,-0.1 0, 0.0 -0.561 18.7-144.2 -89.0 154.1 2.3 -14.7 -2.3 49 49 A H H > S+ 0 0 140 -2,-0.2 4,-2.1 2,-0.2 5,-0.3 0.870 98.6 61.1 -82.7 -40.5 -0.5 -13.2 -4.3 50 50 A A H > S+ 0 0 59 1,-0.2 4,-0.7 2,-0.2 -1,-0.2 0.721 107.6 49.3 -58.7 -21.1 -2.6 -12.1 -1.4 51 51 A L H > S+ 0 0 61 2,-0.2 4,-2.3 3,-0.1 5,-0.2 0.923 108.3 47.7 -84.0 -51.6 0.3 -9.9 -0.4 52 52 A M H X S+ 0 0 24 -4,-1.2 4,-1.8 -11,-0.3 -2,-0.2 0.815 114.1 50.0 -60.1 -31.2 0.9 -8.2 -3.8 53 53 A Q H X S+ 0 0 115 -4,-2.1 4,-1.2 2,-0.2 -1,-0.2 0.832 109.7 49.9 -77.1 -32.7 -2.8 -7.5 -4.1 54 54 A E H X S+ 0 0 92 -4,-0.7 4,-2.5 -5,-0.3 -2,-0.2 0.869 113.2 46.4 -72.5 -36.8 -3.0 -6.0 -0.6 55 55 A L H X S+ 0 0 0 -4,-2.3 4,-2.3 2,-0.2 5,-0.3 0.906 109.1 53.7 -71.1 -43.2 -0.1 -3.7 -1.2 56 56 A N H X S+ 0 0 86 -4,-1.8 4,-1.0 -5,-0.2 -1,-0.2 0.818 115.1 42.5 -60.8 -31.1 -1.4 -2.6 -4.6 57 57 A S H X S+ 0 0 64 -4,-1.2 4,-2.1 2,-0.2 5,-0.5 0.900 113.7 48.7 -81.6 -45.2 -4.6 -1.6 -2.9 58 58 A L H X S+ 0 0 9 -4,-2.5 4,-0.6 1,-0.2 -2,-0.2 0.789 119.6 40.9 -65.1 -27.7 -3.1 -0.0 0.2 59 59 A W H X S+ 0 0 9 -4,-2.3 4,-2.2 3,-0.2 -1,-0.2 0.738 113.2 55.7 -90.6 -27.1 -0.8 1.9 -2.1 60 60 A G H X S+ 0 0 15 -4,-1.0 4,-2.2 -5,-0.3 -2,-0.2 0.994 112.7 36.3 -68.9 -63.9 -3.5 2.6 -4.7 61 61 A T H X S+ 0 0 27 -4,-2.1 4,-1.3 1,-0.3 3,-0.5 0.956 117.8 55.8 -51.9 -49.5 -6.1 4.3 -2.4 62 62 A F H >X S+ 0 0 16 -4,-0.6 4,-1.7 -5,-0.5 3,-1.1 0.909 106.3 49.8 -44.0 -52.2 -3.2 5.8 -0.7 63 63 A K H 3X S+ 0 0 76 -4,-2.2 4,-2.6 1,-0.3 5,-0.3 0.851 96.2 69.9 -58.7 -37.8 -2.1 7.2 -4.0 64 64 A T H 3< S+ 0 0 87 -4,-2.2 4,-0.3 -3,-0.5 -1,-0.3 0.876 110.5 34.9 -49.1 -37.8 -5.6 8.6 -4.6 65 65 A E H XX S+ 0 0 119 -4,-1.3 4,-2.3 -3,-1.1 3,-1.0 0.779 108.1 68.9 -85.1 -30.9 -4.7 11.0 -1.8 66 66 A V H 3X S+ 0 0 4 -4,-1.7 4,-1.1 1,-0.3 -2,-0.2 0.918 94.5 55.1 -54.0 -46.7 -1.1 11.2 -3.0 67 67 A Y H 3< S+ 0 0 193 -4,-2.6 -1,-0.3 1,-0.3 -2,-0.2 0.798 115.2 41.4 -57.3 -27.3 -2.1 13.0 -6.1 68 68 A N H X> S+ 0 0 91 -3,-1.0 3,-2.0 -5,-0.3 4,-0.8 0.728 100.1 70.1 -91.0 -27.1 -3.7 15.5 -3.8 69 69 A L H 3< S+ 0 0 57 -4,-2.3 -2,-0.2 1,-0.3 -1,-0.2 0.744 86.4 70.6 -62.7 -21.6 -0.9 15.5 -1.2 70 70 A R T 3< S+ 0 0 169 -4,-1.1 -1,-0.3 1,-0.2 -2,-0.1 0.451 98.9 49.3 -74.7 1.1 1.1 17.4 -3.9 71 71 A M T <4 S+ 0 0 134 -3,-2.0 2,-0.7 1,-0.1 -1,-0.2 0.677 92.1 82.8-108.1 -30.1 -1.1 20.3 -3.3 72 72 A N < + 0 0 127 -4,-0.8 -1,-0.1 -3,-0.2 -4,-0.0 -0.697 40.1 147.1 -83.0 115.6 -0.9 20.5 0.5 73 73 A L + 0 0 162 -2,-0.7 -1,-0.1 -3,-0.0 -3,-0.0 0.001 68.1 27.8-136.1 27.4 2.2 22.4 1.6 74 74 A G S S- 0 0 79 1,-0.1 3,-0.1 2,-0.1 -2,-0.1 0.018 77.6-123.2-146.1-103.1 1.0 24.0 4.8 75 75 A G S S+ 0 0 74 1,-0.6 -1,-0.1 -2,-0.0 -3,-0.0 -0.053 70.7 90.3 175.1 -58.6 -1.7 23.0 7.3 76 76 A T + 0 0 153 1,-0.1 -1,-0.6 2,-0.0 -2,-0.1 -0.270 35.9 137.0 -62.9 148.8 -4.5 25.6 7.9 77 77 A G + 0 0 65 -3,-0.1 2,-0.8 2,-0.0 -1,-0.1 0.120 16.5 171.3 169.1 59.6 -7.5 25.4 5.6 78 78 A F 0 0 215 1,-0.2 -2,-0.0 0, 0.0 0, 0.0 -0.755 360.0 360.0 -88.6 110.7 -10.9 25.8 7.3 79 79 A Q 0 0 261 -2,-0.8 -1,-0.2 0, 0.0 -2,-0.0 0.365 360.0 360.0-150.3 360.0 -13.6 26.1 4.7