==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CHEMOKINE 27-DEC-05 2FHT . COMPND 2 MOLECULE: VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II; . SOURCE 2 SYNTHETIC: YES; . AUTHOR Y.LI,D.LIU,R.CAO,S.KUMAR,C.Z.DONG,S.R.WILSON,Y.G.GAO,Z.HUANG . 68 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4980.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 57.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 19.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A S 0 0 148 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 160.0 3.6 53.5 2.5 2 5 A W + 0 0 86 1,-0.0 0, 0.0 0, 0.0 0, 0.0 0.361 360.0 67.6 59.5 159.0 6.3 50.8 2.6 3 6 A H - 0 0 191 1,-0.1 3,-0.1 2,-0.0 -1,-0.0 0.986 64.2-178.5 60.3 59.9 8.9 50.5 5.4 4 7 A R - 0 0 78 1,-0.1 -1,-0.1 0, 0.0 2,-0.1 -0.478 34.2 -98.4 -81.4 154.1 6.6 49.5 8.2 5 8 A P - 0 0 128 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.435 38.0-136.0 -71.5 163.5 8.2 48.9 11.6 6 9 A D - 0 0 121 -2,-0.1 2,-0.6 -3,-0.1 22,-0.0 -0.796 14.6-111.5-117.6 156.8 9.0 45.3 12.6 7 10 A K + 0 0 107 -2,-0.3 22,-0.6 25,-0.0 2,-0.3 -0.824 43.0 173.8 -89.6 118.9 8.6 43.5 15.9 8 11 A a - 0 0 52 -2,-0.6 2,-0.8 20,-0.1 40,-0.1 -0.904 34.8-119.0-125.4 154.3 11.9 42.7 17.6 9 12 A b + 0 0 1 25,-0.5 25,-0.3 -2,-0.3 3,-0.1 -0.825 29.0 173.2 -94.8 106.1 12.9 41.3 21.0 10 13 A L S S+ 0 0 153 -2,-0.8 2,-0.3 1,-0.1 -1,-0.1 0.402 73.7 8.4 -92.5 4.4 14.9 43.8 22.9 11 14 A G S S- 0 0 37 23,-0.1 2,-0.3 38,-0.0 -1,-0.1 -0.954 77.1-120.1-170.9 167.1 14.9 41.6 26.0 12 15 A Y - 0 0 68 -2,-0.3 2,-0.6 -3,-0.1 37,-0.2 -0.897 22.9-109.9-128.8 152.2 13.8 38.1 27.0 13 16 A Q - 0 0 47 35,-2.4 37,-0.4 -2,-0.3 4,-0.1 -0.670 35.4-162.7 -71.0 119.2 11.5 36.3 29.4 14 17 A K + 0 0 172 -2,-0.6 -1,-0.2 35,-0.1 3,-0.1 0.950 65.4 65.7 -73.0 -55.4 14.1 34.8 31.9 15 18 A R S S- 0 0 163 1,-0.1 -1,-0.0 0, 0.0 -2,-0.0 -0.598 98.4 -99.0 -74.1 129.0 12.1 32.1 33.6 16 19 A P - 0 0 79 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.026 35.8-125.5 -46.7 139.7 11.0 29.2 31.5 17 20 A L - 0 0 14 -4,-0.1 2,-0.5 -3,-0.1 5,-0.0 -0.788 18.9-120.7 -94.1 136.1 7.3 29.3 30.2 18 21 A P >> - 0 0 80 0, 0.0 3,-2.6 0, 0.0 4,-0.6 -0.633 16.8-136.0 -79.3 124.9 5.0 26.4 30.9 19 22 A Q G >4 S+ 0 0 76 -2,-0.5 3,-1.4 1,-0.3 -2,-0.0 0.791 99.5 67.3 -44.8 -42.6 3.7 25.0 27.6 20 23 A V G 34 S+ 0 0 118 1,-0.3 -1,-0.3 21,-0.0 22,-0.0 0.580 98.6 53.4 -60.7 -10.8 0.2 24.7 28.9 21 24 A L G <4 S+ 0 0 85 -3,-2.6 21,-3.9 21,-0.1 22,-0.6 0.709 102.1 77.6 -93.0 -22.1 0.0 28.5 29.0 22 25 A L E << -A 41 0A 4 -3,-1.4 19,-0.3 -4,-0.6 3,-0.1 -0.647 47.2-177.3 -98.1 146.9 1.1 28.8 25.3 23 26 A S E - 0 0 58 17,-3.0 2,-0.3 1,-0.3 18,-0.2 0.847 65.3 -36.9-105.8 -41.5 -0.6 28.4 22.0 24 27 A S E -A 40 0A 9 16,-1.3 16,-3.5 39,-0.2 -1,-0.3 -0.907 50.6-132.3-165.6-173.2 2.1 28.9 19.3 25 28 A W E -Ab 39 65A 29 39,-1.6 41,-2.7 -2,-0.3 14,-0.2 -0.969 6.7-162.1-152.0 164.8 5.2 30.9 18.4 26 29 A Y E -A 38 0A 28 12,-1.9 12,-3.2 -2,-0.3 2,-0.1 -0.984 25.1-115.4-150.6 144.0 6.7 32.9 15.5 27 30 A P E -A 37 0A 63 0, 0.0 10,-0.2 0, 0.0 2,-0.2 -0.431 27.3-123.8 -77.6 155.1 10.3 34.1 14.8 28 31 A T - 0 0 12 8,-1.7 -20,-0.1 1,-0.2 -22,-0.0 -0.474 49.0 -69.4 -88.2 169.1 11.2 37.7 14.7 29 32 A S > - 0 0 41 -22,-0.6 3,-1.6 -2,-0.2 7,-0.2 -0.348 37.0-130.1 -58.8 142.4 12.8 39.2 11.6 30 33 A Q T 3 S+ 0 0 172 1,-0.3 -1,-0.2 5,-0.1 -2,-0.0 0.635 107.8 67.2 -69.3 -12.5 16.4 38.0 11.0 31 34 A L T 3 S+ 0 0 163 3,-0.0 -1,-0.3 4,-0.0 -2,-0.1 0.584 76.2 105.0 -81.9 -13.4 17.3 41.7 10.6 32 35 A a S < S- 0 0 15 -3,-1.6 -4,-0.0 1,-0.1 -25,-0.0 -0.416 77.3-128.0 -63.4 149.8 16.5 42.3 14.3 33 36 A S S S+ 0 0 121 2,-0.1 -1,-0.1 -2,-0.1 -23,-0.1 0.974 95.1 51.0 -65.3 -56.5 19.6 42.7 16.4 34 37 A K S S- 0 0 56 -25,-0.3 2,-0.7 1,-0.1 -25,-0.5 -0.693 91.2-126.0 -86.2 126.4 18.8 40.2 19.1 35 38 A P + 0 0 80 0, 0.0 16,-0.8 0, 0.0 2,-0.3 -0.669 49.7 155.5 -73.4 116.4 17.8 36.8 17.6 36 39 A G E - C 0 50A 2 -2,-0.7 -8,-1.7 -7,-0.2 2,-0.3 -0.814 39.3-143.8-142.8 170.4 14.4 35.9 19.2 37 40 A V E -AC 27 49A 0 12,-2.0 12,-2.9 -2,-0.3 2,-0.5 -0.977 19.3-138.0-130.3 146.9 11.1 34.1 19.0 38 41 A I E -AC 26 48A 6 -12,-3.2 -12,-1.9 -2,-0.3 2,-0.4 -0.945 12.8-152.8-109.0 121.2 7.7 35.3 20.2 39 42 A F E -AC 25 47A 0 8,-3.5 8,-3.2 -2,-0.5 2,-0.6 -0.753 8.1-145.4 -90.3 136.8 5.5 32.9 22.1 40 43 A L E -AC 24 46A 33 -16,-3.5 -17,-3.0 -2,-0.4 -16,-1.3 -0.931 17.0-145.6-101.9 122.3 1.8 33.5 21.9 41 44 A T E > -A 22 0A 10 4,-2.7 3,-0.8 -2,-0.6 -19,-0.3 -0.461 21.5-118.7 -84.9 161.1 0.0 32.6 25.1 42 45 A K T 3 S+ 0 0 130 -21,-3.9 -20,-0.1 1,-0.2 -1,-0.1 0.844 117.7 61.6 -64.7 -33.2 -3.5 31.1 25.2 43 46 A R T 3 S- 0 0 192 -22,-0.6 -1,-0.2 1,-0.1 -21,-0.1 0.675 126.3-104.2 -64.4 -19.3 -4.4 34.2 27.2 44 47 A G S < S+ 0 0 44 -3,-0.8 -2,-0.1 1,-0.3 -1,-0.1 0.139 73.7 140.7 116.0 -19.1 -3.4 36.2 24.1 45 48 A R - 0 0 120 -5,-0.1 -4,-2.7 1,-0.1 2,-0.5 -0.049 46.5-137.8 -58.6 153.4 -0.1 37.6 25.2 46 49 A Q E -C 40 0A 110 -6,-0.2 2,-0.5 -21,-0.0 -6,-0.2 -0.977 23.7-171.1-114.0 113.5 3.1 37.9 23.1 47 50 A V E -C 39 0A 21 -8,-3.2 -8,-3.5 -2,-0.5 2,-0.3 -0.929 15.5-138.1-116.4 126.0 6.2 36.8 25.0 48 51 A b E -C 38 0A 36 -2,-0.5 -35,-2.4 -10,-0.2 2,-0.3 -0.609 26.0-175.6 -78.5 134.1 9.8 37.3 23.7 49 52 A A E -C 37 0A 0 -12,-2.9 -12,-2.0 -2,-0.3 2,-0.8 -0.955 30.8-115.4-137.8 150.0 12.2 34.5 24.2 50 53 A D E > -C 36 0A 29 -37,-0.4 3,-1.6 -2,-0.3 6,-0.3 -0.754 21.4-155.0 -82.8 109.7 15.9 33.8 23.7 51 54 A K T 3 S+ 0 0 65 -2,-0.8 -1,-0.1 -16,-0.8 -15,-0.1 0.514 87.4 68.4 -65.8 -5.8 16.2 31.0 21.0 52 55 A S T 3 S+ 0 0 70 -17,-0.2 -1,-0.3 4,-0.1 2,-0.1 0.745 80.0 96.4 -82.9 -26.1 19.6 29.9 22.3 53 56 A K S <> S- 0 0 99 -3,-1.6 4,-1.9 1,-0.1 3,-0.2 -0.426 76.8-134.4 -69.1 135.6 18.1 28.7 25.5 54 57 A D H > S+ 0 0 119 1,-0.2 4,-1.6 2,-0.2 5,-0.1 0.850 103.0 55.7 -58.0 -41.1 17.2 25.0 25.7 55 58 A W H > S+ 0 0 38 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.895 109.1 47.5 -63.2 -35.4 13.8 25.4 27.2 56 59 A V H > S+ 0 0 0 -6,-0.3 4,-2.2 -3,-0.2 -1,-0.2 0.888 109.4 51.3 -73.5 -36.7 12.8 27.7 24.3 57 60 A K H X S+ 0 0 101 -4,-1.9 4,-1.3 1,-0.2 -1,-0.2 0.817 109.7 53.8 -66.7 -26.3 14.1 25.4 21.6 58 61 A K H X S+ 0 0 109 -4,-1.6 4,-2.6 2,-0.2 -2,-0.2 0.905 109.2 45.6 -71.5 -48.3 12.0 22.8 23.4 59 62 A L H X S+ 0 0 7 -4,-2.0 4,-2.6 1,-0.2 -2,-0.2 0.851 108.9 57.0 -64.3 -35.0 8.9 24.9 23.2 60 63 A M H < S+ 0 0 40 -4,-2.2 -1,-0.2 2,-0.2 -2,-0.2 0.863 109.6 46.8 -63.0 -34.5 9.8 25.6 19.6 61 64 A Q H < S+ 0 0 161 -4,-1.3 -2,-0.2 1,-0.2 -1,-0.2 0.959 118.6 38.4 -70.0 -57.2 9.7 21.8 19.0 62 65 A Q H < S+ 0 0 93 -4,-2.6 -2,-0.2 -5,-0.1 -3,-0.2 0.743 109.1 66.4 -69.5 -26.3 6.5 21.1 20.8 63 66 A L S < S- 0 0 15 -4,-2.6 2,-0.2 -5,-0.2 -39,-0.2 -0.669 82.9-117.4 -97.7 153.6 4.5 24.2 19.7 64 67 A P - 0 0 83 0, 0.0 -39,-1.6 0, 0.0 2,-0.3 -0.564 29.1-113.3 -85.9 150.8 3.3 25.0 16.2 65 68 A V B -b 25 0A 86 -41,-0.2 2,-0.3 -2,-0.2 -39,-0.2 -0.682 33.5-146.4 -80.6 142.5 4.6 28.1 14.4 66 69 A T - 0 0 48 -41,-2.7 2,-0.3 -2,-0.3 -42,-0.0 -0.787 5.6-125.8-113.0 150.8 1.8 30.7 13.7 67 70 A A 0 0 89 -2,-0.3 -41,-0.0 1,-0.1 0, 0.0 -0.669 360.0 360.0 -92.8 149.4 1.4 33.1 10.8 68 71 A R 0 0 169 -2,-0.3 -1,-0.1 0, 0.0 -42,-0.0 0.807 360.0 360.0 -77.4 360.0 0.9 36.9 11.2