==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 31-DEC-05 2FJ3 . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; . AUTHOR J.LI,D.H.LIN . 104 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6046.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 63.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 3.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 46 44.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 124 A L 0 0 76 0, 0.0 38,-0.1 0, 0.0 57,-0.0 0.000 360.0 360.0 360.0 24.0 -12.3 6.3 -2.8 2 125 A G - 0 0 92 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.772 360.0 -0.5 -59.2 -25.1 -14.8 6.6 -5.6 3 126 A G S S+ 0 0 55 2,-0.0 3,-0.1 35,-0.0 36,-0.1 0.406 85.1 139.5-121.5 -88.7 -12.1 8.9 -7.0 4 127 A Y - 0 0 111 1,-0.1 2,-0.5 34,-0.1 36,-0.3 -0.006 65.0 -87.0 55.7-177.5 -8.9 9.6 -5.0 5 128 A M E -A 39 0A 50 34,-2.5 34,-0.8 32,-0.0 32,-0.1 -0.949 41.6-118.0-130.3 102.1 -5.7 9.8 -6.8 6 129 A L E -A 38 0A 80 -2,-0.5 2,-2.6 1,-0.2 32,-0.2 -0.281 33.2-117.5 -52.6 115.5 -4.2 6.4 -7.1 7 130 A G E -A 37 0A 0 30,-3.7 30,-0.5 48,-0.1 3,-0.3 -0.341 54.8 -83.6 -65.1 74.6 -1.0 6.8 -5.2 8 131 A S - 0 0 51 -2,-2.6 2,-0.2 1,-0.2 29,-0.2 0.018 48.8 -91.7 59.4-166.4 1.4 6.2 -8.0 9 132 A A - 0 0 50 27,-0.1 27,-0.2 25,-0.0 -1,-0.2 -0.716 38.3-178.0-142.1 90.4 2.4 2.7 -9.0 10 133 A M - 0 0 30 25,-2.4 26,-0.1 -3,-0.3 -2,-0.1 0.520 30.4-138.6 -76.2 -4.3 5.5 1.8 -7.1 11 134 A S - 0 0 92 24,-0.5 -1,-0.1 19,-0.1 25,-0.1 0.657 68.1 -58.4 59.9 18.0 5.7 -1.6 -8.8 12 135 A R - 0 0 11 23,-0.3 23,-0.1 1,-0.1 18,-0.1 0.755 48.7-138.2 72.3 115.9 6.7 -2.9 -5.3 13 136 A P - 0 0 61 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.411 51.6-105.5 -81.4 5.2 9.8 -1.3 -3.8 14 137 A L - 0 0 100 12,-0.1 -2,-0.1 1,-0.0 13,-0.0 0.873 40.2-171.0 60.8 107.7 10.8 -4.7 -2.7 15 138 A I - 0 0 29 8,-0.1 -1,-0.0 66,-0.0 8,-0.0 0.668 22.3-167.5 -98.5 -23.5 10.2 -5.0 1.0 16 139 A H - 0 0 128 1,-0.1 7,-0.1 7,-0.1 8,-0.0 0.863 23.6-172.5 38.2 112.2 12.0 -8.4 1.2 17 140 A F - 0 0 52 2,-0.1 -1,-0.1 3,-0.0 3,-0.1 0.519 42.0-121.8-102.2 -9.9 11.6 -10.5 4.4 18 141 A G S S+ 0 0 72 1,-0.2 2,-0.2 2,-0.1 4,-0.0 0.860 70.5 132.4 68.0 34.9 14.1 -13.0 3.3 19 142 A N - 0 0 59 1,-0.1 -1,-0.2 2,-0.1 -2,-0.1 -0.481 60.0-138.9-109.1 178.7 11.4 -15.6 3.7 20 143 A D S > S+ 0 0 153 -2,-0.2 4,-0.9 3,-0.1 -1,-0.1 0.808 97.5 6.9 -98.1 -61.6 10.0 -18.5 1.6 21 144 A Y H > S+ 0 0 126 2,-0.2 4,-3.1 3,-0.2 5,-0.1 0.886 133.6 45.8 -95.7 -45.7 6.3 -18.3 2.1 22 145 A E H > S+ 0 0 81 2,-0.2 4,-2.0 1,-0.2 5,-0.1 0.837 118.0 47.5 -67.5 -32.7 5.7 -15.0 4.0 23 146 A D H > S+ 0 0 30 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.971 113.8 45.8 -64.2 -57.4 8.2 -13.3 1.6 24 147 A R H X S+ 0 0 113 -4,-0.9 4,-1.9 2,-0.2 5,-0.4 0.876 107.0 60.6 -52.1 -42.4 6.4 -14.9 -1.3 25 148 A Y H >X S+ 0 0 20 -4,-3.1 4,-2.5 1,-0.2 3,-0.6 0.955 110.2 40.1 -51.0 -56.5 3.1 -13.8 0.4 26 149 A Y H 3< S+ 0 0 7 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.870 112.0 58.2 -56.3 -38.6 4.3 -10.2 0.1 27 150 A R H 3< S+ 0 0 151 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.722 115.7 34.6 -70.6 -21.2 5.7 -10.9 -3.4 28 151 A E H XX S+ 0 0 34 -4,-1.9 3,-3.1 -3,-0.6 4,-2.0 0.703 106.8 71.4 -97.0 -28.4 2.3 -12.0 -4.6 29 152 A N T 3< S+ 0 0 0 -4,-2.5 -2,-0.2 -5,-0.4 -3,-0.2 0.381 84.9 70.1 -65.6 -0.7 0.9 -9.3 -2.3 30 153 A M T 34 S+ 0 0 55 -5,-0.1 -1,-0.3 5,-0.1 5,-0.2 0.608 112.0 27.1 -86.1 -14.8 2.3 -7.0 -4.8 31 154 A Y T <4 S+ 0 0 186 -3,-3.1 -2,-0.2 3,-0.2 4,-0.1 0.808 129.8 35.9-108.1 -60.2 -0.4 -8.2 -7.3 32 155 A R S < S+ 0 0 4 -4,-2.0 -3,-0.2 2,-0.1 -2,-0.1 0.942 133.6 35.0 -58.7 -50.1 -3.4 -9.3 -5.1 33 156 A Y S S- 0 0 0 -5,-0.4 27,-0.1 -7,-0.1 2,-0.0 -0.801 107.3-125.2 -96.7 144.6 -2.5 -6.6 -2.9 34 157 A P - 0 0 3 0, 0.0 -3,-0.2 0, 0.0 52,-0.1 -0.245 12.2-129.1 -95.8-178.2 -1.2 -3.7 -4.9 35 158 A N S S+ 0 0 19 -5,-0.2 -25,-2.4 -4,-0.1 -24,-0.5 -0.290 91.2 62.7-115.8 44.8 1.8 -1.5 -5.2 36 159 A Q - 0 0 59 -27,-0.2 2,-0.3 -26,-0.1 -28,-0.2 -0.967 69.8-142.3-164.9 154.6 -0.3 1.6 -5.1 37 160 A V E -A 7 0A 0 -30,-0.5 -30,-3.7 -2,-0.3 2,-0.7 -0.746 18.0-112.1-129.7 168.3 -2.7 3.2 -2.7 38 161 A Y E +A 6 0A 53 17,-1.0 2,-0.3 -2,-0.3 21,-0.2 -0.884 62.7 104.5-107.6 105.3 -5.9 5.1 -2.7 39 162 A Y E -A 5 0A 3 -34,-0.8 -34,-2.5 -2,-0.7 -2,-0.1 -0.969 61.5-108.1-165.5 166.2 -5.7 8.7 -1.6 40 163 A R - 0 0 128 -2,-0.3 2,-0.4 -36,-0.3 15,-0.0 -0.598 58.8 -71.6-100.9 171.2 -5.7 12.3 -3.0 41 164 A P - 0 0 46 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.418 56.6-164.4 -88.5 120.9 -2.6 14.4 -3.2 42 165 A V + 0 0 2 -2,-0.4 59,-0.2 1,-0.1 -3,-0.0 -0.725 40.3 130.3-110.4 142.6 -1.3 15.6 0.1 43 166 A D + 0 0 80 -2,-0.3 -1,-0.1 57,-0.1 3,-0.0 -0.046 63.0 83.2-177.0 51.0 1.1 18.2 1.3 44 167 A Q S S+ 0 0 113 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 0.090 78.9 67.1-147.9 19.3 -0.9 20.0 3.9 45 168 A Y - 0 0 131 1,-0.1 3,-0.0 2,-0.0 -3,-0.0 -0.835 62.5-142.2-136.4 173.9 -0.5 17.8 7.0 46 169 A S S S+ 0 0 114 -2,-0.3 2,-0.1 1,-0.0 -1,-0.1 0.826 78.0 71.0-104.2 -53.8 2.3 16.8 9.4 47 170 A N > - 0 0 78 1,-0.1 4,-0.7 2,-0.1 5,-0.1 -0.425 55.8-171.5 -71.7 138.9 1.7 13.1 10.2 48 171 A Q H > S+ 0 0 82 2,-0.2 4,-3.9 -2,-0.1 3,-0.2 0.919 81.5 46.7 -93.9 -63.7 2.4 10.7 7.4 49 172 A N H > S+ 0 0 87 1,-0.2 4,-0.7 3,-0.2 5,-0.3 0.664 108.3 64.0 -59.3 -15.7 1.2 7.2 8.6 50 173 A S H > S+ 0 0 73 3,-0.2 4,-1.0 2,-0.2 -1,-0.2 0.992 117.5 22.1 -66.0 -65.1 -1.9 9.1 9.7 51 174 A F H X S+ 0 0 42 -4,-0.7 4,-1.8 -3,-0.2 -2,-0.2 0.858 131.1 50.2 -70.0 -34.3 -3.1 10.1 6.3 52 175 A V H >X S+ 0 0 0 -4,-3.9 4,-1.4 2,-0.2 3,-0.6 0.994 110.2 42.4 -71.6 -68.7 -1.0 7.4 4.7 53 176 A H H 3X S+ 0 0 52 -4,-0.7 4,-1.6 1,-0.2 -1,-0.2 0.780 114.2 58.2 -50.0 -25.5 -2.1 4.3 6.7 54 177 A D H 3< S+ 0 0 79 -4,-1.0 -1,-0.2 -5,-0.3 -2,-0.2 0.931 100.2 54.1 -67.7 -42.3 -5.6 5.8 6.3 55 178 A a H S+ 0 0 0 -4,-1.4 4,-2.2 2,-0.3 5,-0.8 0.768 98.1 66.7 -87.0 -28.3 -4.4 2.0 3.0 57 180 A N H <5S+ 0 0 68 -4,-1.6 -2,-0.2 -5,-0.3 -1,-0.2 0.484 113.6 37.6 -64.9 -5.5 -7.4 1.8 5.3 58 181 A I H >5S+ 0 0 21 -4,-0.2 4,-1.9 -20,-0.1 -2,-0.3 0.680 122.6 41.6 -98.7 -47.8 -8.8 2.4 1.9 59 182 A T H X5S+ 0 0 0 -4,-2.0 4,-2.1 1,-0.2 -3,-0.2 0.942 111.9 48.1 -72.1 -56.2 -6.4 0.4 -0.2 60 183 A V H X5S+ 0 0 3 -4,-2.2 4,-0.7 1,-0.2 -1,-0.2 0.787 111.5 59.2 -59.6 -22.0 -5.9 -2.8 1.7 61 184 A K H >>S+ 0 0 63 -4,-1.9 5,-1.2 1,-0.3 4,-0.2 0.787 121.7 48.0 -52.4 -29.4 -10.6 -2.8 -1.6 63 186 A H H 3<5S+ 0 0 31 -4,-2.1 -1,-0.3 -5,-0.2 -2,-0.2 0.485 122.4 27.7 -96.9 -4.9 -7.8 -5.3 -2.1 64 187 A T H <<5S+ 0 0 18 -3,-2.1 -2,-0.2 -4,-0.7 -3,-0.2 0.439 112.2 61.3-132.4 -5.8 -8.4 -7.7 0.7 65 188 A V T <5S- 0 0 80 -4,-2.5 -3,-0.1 -5,-0.2 -2,-0.1 0.433 137.1 -12.7-108.0 -1.5 -12.2 -7.5 1.3 66 189 A T T 5S+ 0 0 95 -5,-0.3 4,-0.2 -4,-0.2 -3,-0.1 0.148 135.0 62.3-159.7 -46.1 -13.1 -8.7 -2.2 67 190 A T S > S+ 0 0 0 1,-0.1 4,-2.7 -6,-0.1 3,-1.0 0.829 108.9 61.0 -96.3 -40.4 -8.5 -11.1 -1.7 69 192 A T T 34 S+ 0 0 89 1,-0.3 -2,-0.2 2,-0.2 -1,-0.1 0.339 78.6 92.7 -73.0 12.3 -11.7 -13.2 -1.2 70 193 A K T 34 S- 0 0 123 -4,-0.2 -1,-0.3 1,-0.1 -3,-0.1 0.295 127.2 -58.0 -86.3 10.4 -11.6 -13.9 -4.9 71 194 A G T <4 S+ 0 0 61 -3,-1.0 2,-0.2 1,-0.3 -2,-0.2 0.618 99.9 130.1 121.6 27.1 -9.7 -17.0 -4.0 72 195 A E < - 0 0 39 -4,-2.7 2,-0.7 -8,-0.1 -1,-0.3 -0.651 56.2-124.2-102.0 162.9 -6.6 -15.7 -2.2 73 196 A N - 0 0 104 -2,-0.2 2,-0.6 -48,-0.0 -4,-0.1 -0.908 31.4-179.9-106.4 103.3 -5.2 -16.9 1.1 74 197 A F + 0 0 98 -2,-0.7 2,-0.2 -10,-0.1 -2,-0.0 -0.927 5.9 168.2-108.8 120.2 -5.0 -13.9 3.5 75 198 A T >> - 0 0 67 -2,-0.6 4,-1.6 1,-0.0 3,-1.5 -0.680 58.3 -83.2-114.6 170.5 -3.6 -14.6 6.9 76 199 A E H 3> S+ 0 0 144 1,-0.3 4,-1.7 -2,-0.2 5,-0.1 0.813 133.1 59.6 -39.6 -35.1 -2.4 -12.2 9.6 77 200 A T H 3> S+ 0 0 25 1,-0.2 4,-2.6 2,-0.2 5,-0.3 0.913 100.5 53.3 -60.9 -42.7 0.8 -12.3 7.7 78 201 A D H <> S+ 0 0 0 -3,-1.5 4,-2.1 1,-0.2 5,-0.3 0.854 104.0 57.1 -62.4 -36.4 -1.0 -10.9 4.6 79 202 A I H X S+ 0 0 37 -4,-1.6 4,-3.2 2,-0.2 5,-0.4 0.950 112.7 38.5 -59.1 -51.1 -2.3 -8.1 6.6 80 203 A K H X S+ 0 0 66 -4,-1.7 4,-3.5 2,-0.2 5,-0.4 0.989 115.7 49.0 -69.4 -58.8 1.1 -6.9 7.6 81 204 A I H X S+ 0 0 0 -4,-2.6 4,-1.3 1,-0.2 5,-0.2 0.844 122.0 38.5 -47.5 -38.5 2.9 -7.5 4.3 82 205 A M H X S+ 0 0 1 -4,-2.1 4,-3.1 -5,-0.3 5,-0.4 0.976 121.2 38.6 -80.6 -59.0 0.2 -5.7 2.5 83 206 A E H X S+ 0 0 40 -4,-3.2 4,-3.2 -5,-0.3 5,-0.3 0.936 117.2 54.6 -56.5 -44.3 -0.7 -2.9 4.9 84 207 A R H X S+ 0 0 113 -4,-3.5 4,-2.4 -5,-0.4 -1,-0.2 0.897 116.9 34.2 -57.6 -47.8 2.9 -2.5 5.7 85 208 A V H X S+ 0 0 0 -4,-1.3 4,-1.9 -5,-0.4 5,-0.3 0.979 120.6 46.9 -72.1 -54.0 4.0 -2.1 2.0 86 209 A V H X S+ 0 0 0 -4,-3.1 4,-1.0 1,-0.2 -2,-0.2 0.843 118.1 46.0 -59.6 -34.6 0.9 -0.3 0.8 87 210 A E H X S+ 0 0 39 -4,-3.2 4,-2.3 -5,-0.4 3,-0.5 0.969 111.9 46.8 -68.6 -52.2 1.2 2.0 3.9 88 211 A Q H X S+ 0 0 62 -4,-2.4 4,-1.4 -5,-0.3 -2,-0.2 0.691 115.2 47.4 -77.7 -13.4 4.9 2.7 3.7 89 212 A M H X S+ 0 0 0 -4,-1.9 4,-3.5 2,-0.3 -1,-0.3 0.688 107.3 54.4 -93.0 -25.6 4.7 3.5 0.0 90 213 A a H < S+ 0 0 0 -4,-1.0 -2,-0.2 -3,-0.5 -3,-0.2 0.827 112.8 46.5 -66.8 -33.6 1.7 5.6 0.6 91 214 A I H >X S+ 0 0 40 -4,-2.3 4,-2.2 2,-0.2 3,-0.7 0.886 111.2 49.2 -69.8 -45.1 4.2 7.2 3.0 92 215 A T H 3X S+ 0 0 45 -4,-1.4 4,-2.3 1,-0.3 -2,-0.2 0.950 114.0 46.1 -58.3 -47.9 6.8 7.2 0.3 93 216 A Q H 3X S+ 0 0 7 -4,-3.5 4,-1.6 2,-0.2 -1,-0.3 0.500 106.1 62.9 -73.7 -3.5 4.3 8.7 -2.0 94 217 A Y H <> S+ 0 0 6 -3,-0.7 4,-2.9 2,-0.2 -2,-0.2 0.905 109.4 37.2 -79.7 -50.2 3.5 11.1 0.8 95 218 A Q H X S+ 0 0 126 -4,-2.2 4,-1.8 2,-0.2 -2,-0.2 0.840 120.8 49.4 -68.7 -32.0 6.9 12.6 0.8 96 219 A Q H X S+ 0 0 79 -4,-2.3 4,-2.8 -5,-0.3 -2,-0.2 0.939 111.1 48.3 -67.3 -48.2 6.8 12.2 -3.0 97 220 A E H X S+ 0 0 24 -4,-1.6 4,-2.2 2,-0.2 -2,-0.2 0.900 108.0 56.7 -57.9 -43.9 3.4 13.9 -3.1 98 221 A S H X S+ 0 0 30 -4,-2.9 4,-0.7 1,-0.2 -1,-0.2 0.939 115.0 35.9 -50.3 -52.4 4.8 16.7 -0.9 99 222 A Q H X S+ 0 0 110 -4,-1.8 4,-1.7 2,-0.2 -1,-0.2 0.767 109.5 63.9 -77.7 -26.0 7.6 17.4 -3.3 100 223 A A H X S+ 0 0 22 -4,-2.8 4,-2.7 2,-0.2 -1,-0.2 0.867 100.6 53.5 -61.5 -34.0 5.2 16.7 -6.2 101 224 A A H < S+ 0 0 25 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.805 106.1 52.8 -66.9 -29.1 3.4 19.7 -4.9 102 225 A Y H < S+ 0 0 185 -4,-0.7 -2,-0.2 -5,-0.2 -1,-0.2 0.821 110.3 47.3 -71.7 -32.7 6.7 21.4 -5.2 103 226 A Q H < 0 0 137 -4,-1.7 -2,-0.2 1,-0.2 -3,-0.2 0.875 360.0 360.0 -78.1 -38.7 6.9 20.3 -8.8 104 227 A R < 0 0 196 -4,-2.7 -1,-0.2 -5,-0.1 -2,-0.2 0.537 360.0 360.0 -80.1 360.0 3.4 21.4 -9.7