==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-MAR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 22-JAN-09 3FYM . COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS . AUTHOR L.XU,S.E.SEDELNIKOVA,P.J.BAKER,D.W.RICE . 82 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5274.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 68.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 13.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 43.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1002 A K 0 0 187 0, 0.0 2,-0.1 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 154.1 13.2 -3.2 17.9 2 1003 A T > - 0 0 40 34,-0.1 4,-2.3 1,-0.1 5,-0.2 -0.429 360.0-106.2 -80.0 167.4 13.1 -0.6 15.2 3 1004 A V H > S+ 0 0 0 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.916 122.2 53.1 -61.5 -39.3 14.8 2.8 15.7 4 1005 A G H > S+ 0 0 0 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.902 109.5 47.8 -66.8 -36.3 11.4 4.4 16.2 5 1006 A E H > S+ 0 0 111 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.889 110.1 52.9 -68.0 -39.2 10.5 1.9 18.9 6 1007 A A H X S+ 0 0 11 -4,-2.3 4,-1.8 2,-0.2 -2,-0.2 0.933 113.9 42.8 -60.9 -47.8 13.8 2.4 20.6 7 1008 A L H X S+ 0 0 0 -4,-2.4 4,-2.5 2,-0.2 -2,-0.2 0.955 116.3 46.5 -63.1 -50.3 13.3 6.1 20.7 8 1009 A K H X S+ 0 0 68 -4,-2.8 4,-2.7 1,-0.2 -2,-0.2 0.889 109.6 55.1 -60.1 -43.6 9.6 5.9 21.8 9 1010 A G H X S+ 0 0 16 -4,-2.5 4,-2.7 -5,-0.2 -1,-0.2 0.922 110.1 45.9 -56.7 -47.3 10.4 3.4 24.4 10 1011 A R H X S+ 0 0 71 -4,-1.8 4,-1.9 -5,-0.2 -2,-0.2 0.934 111.0 52.2 -61.9 -44.8 13.0 5.7 26.0 11 1012 A R H <>S+ 0 0 25 -4,-2.5 5,-2.2 1,-0.2 4,-0.3 0.921 111.7 47.3 -55.6 -43.9 10.6 8.7 25.8 12 1013 A E H ><5S+ 0 0 116 -4,-2.7 3,-1.6 1,-0.2 -2,-0.2 0.899 108.6 53.8 -70.5 -40.8 8.0 6.6 27.6 13 1014 A R H 3<5S+ 0 0 175 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.825 108.4 50.9 -61.6 -28.8 10.5 5.4 30.3 14 1015 A L T 3<5S- 0 0 77 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.508 111.7-124.7 -80.3 -9.2 11.3 9.1 30.9 15 1016 A G T < 5 + 0 0 63 -3,-1.6 2,-0.4 -4,-0.3 -3,-0.2 0.699 58.1 155.5 68.2 21.8 7.6 9.8 31.3 16 1017 A M < - 0 0 39 -5,-2.2 -1,-0.2 -6,-0.2 2,-0.1 -0.646 34.5-141.8 -88.1 131.0 8.0 12.4 28.5 17 1018 A T > - 0 0 80 -2,-0.4 4,-2.3 -3,-0.1 5,-0.1 -0.430 24.1-113.2 -84.2 162.7 5.0 13.5 26.4 18 1019 A L H > S+ 0 0 24 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.867 118.6 59.1 -57.3 -37.5 5.2 14.2 22.7 19 1020 A T H > S+ 0 0 65 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.938 107.1 44.6 -59.4 -46.8 4.3 17.8 23.6 20 1021 A E H > S+ 0 0 29 2,-0.2 4,-2.2 1,-0.2 -2,-0.2 0.931 112.1 52.8 -58.1 -47.9 7.5 18.1 25.7 21 1022 A L H X S+ 0 0 0 -4,-2.3 4,-2.4 2,-0.2 6,-0.3 0.890 107.2 51.7 -66.1 -36.4 9.6 16.4 23.1 22 1023 A E H X S+ 0 0 64 -4,-2.6 4,-2.2 1,-0.2 5,-0.2 0.923 110.8 49.4 -62.2 -41.7 8.4 18.8 20.4 23 1024 A Q H < S+ 0 0 148 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.888 115.8 41.9 -59.2 -46.3 9.3 21.7 22.8 24 1025 A R H < S+ 0 0 150 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.764 125.5 32.4 -75.4 -31.5 12.8 20.2 23.4 25 1026 A T H < S- 0 0 15 -4,-2.4 -2,-0.2 2,-0.2 -3,-0.2 0.651 91.5-133.2 -98.3 -25.5 13.6 19.2 19.8 26 1027 A G < + 0 0 66 -4,-2.2 2,-0.5 -5,-0.3 -4,-0.1 0.557 65.8 127.3 73.7 6.6 11.8 21.8 17.8 27 1028 A I - 0 0 13 -6,-0.3 -1,-0.3 -5,-0.2 -2,-0.2 -0.809 67.5-109.2 -90.9 126.4 10.4 19.0 15.6 28 1029 A K >> - 0 0 150 -2,-0.5 4,-2.1 1,-0.1 3,-1.0 -0.267 23.9-117.1 -66.0 146.5 6.7 19.0 15.2 29 1030 A R H 3> S+ 0 0 106 1,-0.3 4,-2.6 2,-0.2 5,-0.2 0.825 112.8 60.9 -55.0 -39.2 4.7 16.2 16.9 30 1031 A E H 3> S+ 0 0 109 1,-0.2 4,-2.1 2,-0.2 -1,-0.3 0.905 109.0 42.9 -53.3 -45.5 3.4 14.9 13.6 31 1032 A M H <> S+ 0 0 23 -3,-1.0 4,-2.6 2,-0.2 -2,-0.2 0.874 110.1 55.3 -73.1 -36.9 7.0 14.2 12.5 32 1033 A L H X S+ 0 0 0 -4,-2.1 4,-2.5 2,-0.2 -2,-0.2 0.915 109.6 48.1 -59.0 -44.4 8.0 12.8 15.9 33 1034 A V H X S+ 0 0 49 -4,-2.6 4,-1.5 2,-0.2 6,-0.2 0.906 108.6 54.0 -63.9 -41.3 5.2 10.3 15.6 34 1035 A H H <>S+ 0 0 17 -4,-2.1 5,-2.9 -5,-0.2 3,-0.5 0.955 110.4 46.9 -57.2 -44.6 6.3 9.5 12.0 35 1036 A I H ><5S+ 0 0 0 -4,-2.6 3,-1.9 1,-0.2 -2,-0.2 0.928 108.7 53.8 -62.3 -42.2 9.8 8.7 13.4 36 1037 A E H 3<5S+ 0 0 7 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.786 114.4 43.3 -61.3 -27.7 8.5 6.6 16.2 37 1038 A N T 3<5S- 0 0 79 -4,-1.5 -1,-0.3 -3,-0.5 -2,-0.2 0.236 112.7-116.8-100.7 10.2 6.6 4.6 13.7 38 1039 A N T < 5 + 0 0 41 -3,-1.9 2,-1.4 1,-0.2 3,-0.3 0.770 65.7 147.3 57.6 29.2 9.4 4.3 11.1 39 1040 A E > < + 0 0 60 -5,-2.9 3,-2.0 -6,-0.2 4,-0.2 -0.354 6.1 149.8 -90.0 55.9 7.2 6.3 8.7 40 1041 A F G > + 0 0 12 -2,-1.4 3,-1.6 1,-0.3 -1,-0.2 0.830 64.1 62.9 -66.5 -28.3 10.1 8.1 7.1 41 1042 A D G 3 S+ 0 0 122 -3,-0.3 -1,-0.3 1,-0.3 5,-0.1 0.596 95.5 62.9 -71.9 -7.0 8.4 8.4 3.7 42 1043 A Q G < S+ 0 0 97 -3,-2.0 -1,-0.3 -11,-0.1 -2,-0.2 0.417 79.7 100.7 -94.9 0.3 5.8 10.5 5.4 43 1044 A L S < S- 0 0 8 -3,-1.6 3,-0.4 -4,-0.2 4,-0.1 -0.692 78.3-132.6 -77.9 136.1 8.4 13.2 6.3 44 1045 A P S S+ 0 0 116 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 0.882 104.2 28.6 -56.1 -39.9 8.2 16.1 3.8 45 1046 A N S > S- 0 0 56 1,-0.1 3,-2.0 -3,-0.0 4,-0.1 -0.905 71.7-172.4-122.3 97.9 12.0 15.9 3.4 46 1047 A K G > S+ 0 0 95 -2,-0.5 3,-2.0 -3,-0.4 4,-0.3 0.724 79.4 75.6 -63.1 -22.2 13.1 12.3 4.0 47 1048 A N G 3 S+ 0 0 53 1,-0.3 3,-0.4 2,-0.1 4,-0.3 0.743 88.1 61.5 -59.8 -22.4 16.7 13.5 3.8 48 1049 A Y G <> S+ 0 0 133 -3,-2.0 4,-2.7 1,-0.2 -1,-0.3 0.387 73.3 102.3 -81.7 -1.2 16.2 14.9 7.3 49 1050 A S H <> S+ 0 0 0 -3,-2.0 4,-2.5 1,-0.2 -1,-0.2 0.918 83.8 42.6 -51.7 -52.5 15.4 11.5 8.8 50 1051 A E H > S+ 0 0 56 26,-0.5 4,-2.8 -3,-0.4 -1,-0.2 0.926 113.5 51.7 -61.4 -45.1 18.8 11.1 10.4 51 1052 A G H > S+ 0 0 40 -4,-0.3 4,-2.1 1,-0.2 -1,-0.2 0.877 110.6 48.5 -62.0 -36.7 18.9 14.6 11.7 52 1053 A F H X S+ 0 0 45 -4,-2.7 4,-2.5 2,-0.2 -1,-0.2 0.915 112.2 48.5 -64.8 -47.3 15.5 14.2 13.3 53 1054 A I H X S+ 0 0 0 -4,-2.5 4,-3.0 -5,-0.3 5,-0.2 0.910 110.9 52.6 -56.8 -44.1 16.6 10.9 14.9 54 1055 A R H X S+ 0 0 84 -4,-2.8 4,-2.5 2,-0.2 -2,-0.2 0.912 110.4 45.4 -60.2 -45.1 19.8 12.6 16.1 55 1056 A K H X S+ 0 0 93 -4,-2.1 4,-2.1 2,-0.2 -1,-0.2 0.920 114.8 48.3 -68.0 -43.4 18.0 15.5 17.8 56 1057 A Y H X S+ 0 0 0 -4,-2.5 4,-1.8 2,-0.2 -2,-0.2 0.968 112.9 48.6 -54.4 -56.9 15.4 13.1 19.4 57 1058 A A H <>S+ 0 0 0 -4,-3.0 5,-2.7 1,-0.2 4,-0.3 0.913 109.7 51.6 -52.5 -47.4 18.1 10.8 20.6 58 1059 A S H ><5S+ 0 0 55 -4,-2.5 3,-1.3 1,-0.2 -1,-0.2 0.938 108.4 51.1 -62.8 -40.4 20.2 13.7 22.1 59 1060 A V H 3<5S+ 0 0 4 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.868 115.7 41.7 -62.6 -34.8 17.2 15.1 24.0 60 1061 A V T 3<5S- 0 0 0 -4,-1.8 -1,-0.3 -5,-0.2 -2,-0.2 0.221 118.1-109.6 -99.6 13.2 16.5 11.7 25.5 61 1062 A N T < 5 + 0 0 138 -3,-1.3 2,-0.5 -4,-0.3 -3,-0.2 0.918 69.2 140.5 53.7 53.1 20.2 10.8 26.2 62 1063 A I < - 0 0 36 -5,-2.7 -1,-0.2 -6,-0.1 -2,-0.1 -0.988 61.0-117.0-111.7 126.5 20.6 8.2 23.7 63 1064 A E > - 0 0 84 -2,-0.5 4,-1.4 1,-0.2 5,-0.1 -0.474 30.0-153.1 -62.0 121.1 24.0 8.4 22.0 64 1065 A P H > S+ 0 0 22 0, 0.0 4,-2.7 0, 0.0 5,-0.2 0.875 79.4 55.2 -74.5 -43.4 23.0 9.1 18.4 65 1066 A N H > S+ 0 0 92 1,-0.2 4,-2.5 2,-0.2 5,-0.1 0.915 112.0 43.2 -59.8 -42.1 25.8 7.8 16.2 66 1067 A Q H > S+ 0 0 123 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.845 113.0 53.0 -78.1 -26.8 25.7 4.3 17.6 67 1068 A L H X S+ 0 0 18 -4,-1.4 4,-0.8 2,-0.2 -2,-0.2 0.950 112.2 45.7 -62.0 -49.9 21.8 4.2 17.5 68 1069 A I H >< S+ 0 0 15 -4,-2.7 3,-0.9 1,-0.2 -2,-0.2 0.928 112.5 50.9 -58.5 -45.7 21.9 5.2 13.9 69 1070 A Q H >< S+ 0 0 129 -4,-2.5 3,-0.9 1,-0.3 -1,-0.2 0.889 108.1 52.2 -59.7 -40.0 24.6 2.6 13.1 70 1071 A A H 3< S+ 0 0 75 -4,-2.0 -1,-0.3 1,-0.2 -2,-0.2 0.653 123.1 30.1 -70.5 -18.6 22.6 -0.1 14.8 71 1072 A H T XX S+ 0 0 20 -3,-0.9 3,-2.1 -4,-0.8 4,-0.9 0.104 79.6 127.3-124.4 20.1 19.5 0.7 12.7 72 1073 A Q T <4 + 0 0 114 -3,-0.9 3,-0.5 1,-0.3 5,-0.1 0.784 68.5 59.2 -60.4 -33.3 21.2 2.0 9.5 73 1074 A D T 34 S+ 0 0 163 1,-0.2 -1,-0.3 -4,-0.2 -2,-0.1 0.715 108.4 47.4 -70.2 -17.4 19.3 -0.3 7.2 74 1075 A E T <4 S+ 0 0 66 -3,-2.1 -1,-0.2 -6,-0.2 -2,-0.2 0.697 100.2 78.3 -83.3 -29.1 16.0 1.2 8.4 75 1076 A I S < S- 0 0 16 -4,-0.9 2,-0.6 -3,-0.5 -1,-0.0 -0.764 78.7-129.4 -97.7 124.0 17.0 4.8 8.2 76 1077 A P - 0 0 32 0, 0.0 -26,-0.5 0, 0.0 -27,-0.1 -0.581 28.8-138.8 -67.8 118.0 17.1 6.7 4.9 77 1078 A S - 0 0 72 -2,-0.6 2,-0.4 1,-0.1 -28,-0.1 -0.347 35.1 -81.0 -70.5 159.9 20.5 8.4 4.7 78 1079 A N - 0 0 94 1,-0.1 2,-1.3 -31,-0.1 -1,-0.1 -0.456 37.6-151.8 -67.2 113.6 20.8 11.9 3.4 79 1080 A Q + 0 0 137 -2,-0.4 2,-2.2 1,-0.1 3,-0.3 -0.253 36.6 153.0 -88.8 55.7 20.7 11.7 -0.5 80 1081 A A + 0 0 79 -2,-1.3 -1,-0.1 1,-0.2 -2,-0.1 -0.386 15.6 139.6 -87.7 68.5 22.7 14.9 -1.0 81 1082 A E 0 0 119 -2,-2.2 -1,-0.2 1,-0.2 -2,-0.0 0.907 360.0 360.0 -84.4 -44.7 24.1 13.8 -4.3 82 1083 A W 0 0 267 -3,-0.3 -1,-0.2 0, 0.0 -3,-0.0 -0.975 360.0 360.0-120.4 360.0 24.0 16.9 -6.5