==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 11-OCT-00 1G1E . COMPND 2 MOLECULE: MAD1 PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR K.BRUBAKER,S.M.COWLEY,K.HUANG,R.N.EISENMAN,I.RADHAKRISHNAN . 105 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7255.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 79 75.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 61 58.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 6 A R 0 0 180 0, 0.0 4,-0.3 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 150.0 0.3 11.5 -2.8 2 7 A M > + 0 0 94 3,-0.1 4,-4.3 2,-0.1 5,-0.4 0.936 360.0 87.2 -86.3 -54.7 1.2 8.7 -5.2 3 8 A N H > S+ 0 0 30 1,-0.2 4,-2.0 2,-0.2 5,-0.2 0.593 99.9 23.5 -7.1 -97.4 3.1 6.2 -2.9 4 9 A I H > S+ 0 0 3 1,-0.2 4,-3.6 2,-0.2 3,-0.4 0.916 129.3 44.7 -48.4 -57.0 0.3 4.0 -1.4 5 10 A Q H > S+ 0 0 59 -4,-0.3 4,-2.5 1,-0.2 -1,-0.2 0.869 111.2 56.2 -58.9 -35.6 -2.2 4.5 -4.2 6 11 A M H < S+ 0 0 14 -4,-4.3 4,-0.5 1,-0.2 -1,-0.2 0.866 114.9 38.0 -61.8 -39.2 0.6 4.0 -6.6 7 12 A L H X S+ 0 0 2 -4,-2.0 4,-1.0 -3,-0.4 3,-0.5 0.873 113.5 55.4 -81.1 -41.3 1.3 0.6 -5.0 8 13 A L H >X S+ 0 0 0 -4,-3.6 4,-1.1 1,-0.2 3,-0.8 0.953 102.3 56.0 -56.2 -53.8 -2.4 -0.3 -4.4 9 14 A E H 3X S+ 0 0 124 -4,-2.5 4,-1.3 1,-0.3 -1,-0.2 0.815 98.5 67.4 -48.8 -32.0 -3.4 0.2 -8.0 10 15 A A H >> S+ 0 0 0 -4,-0.5 4,-3.1 -3,-0.5 3,-1.2 0.953 94.9 52.9 -52.9 -57.8 -0.6 -2.4 -8.7 11 16 A A H - 0 0 133 -2,-0.3 3,-1.0 1,-0.1 4,-0.4 0.981 55.0-158.3 57.1 85.7 10.9 7.4 -13.8 24 301 B P T 3> S+ 0 0 95 0, 0.0 4,-3.1 0, 0.0 5,-0.3 0.414 73.6 95.6 -72.7 3.5 8.6 4.3 -13.7 25 302 B V H 3> S+ 0 0 92 2,-0.2 4,-2.2 1,-0.2 5,-0.1 0.881 81.3 51.8 -61.6 -39.5 11.0 2.7 -11.2 26 303 B E H <> S+ 0 0 99 -3,-1.0 4,-1.8 2,-0.2 5,-0.2 0.951 116.5 38.3 -62.2 -51.2 8.8 3.9 -8.2 27 304 B F H > S+ 0 0 83 -4,-0.4 4,-2.8 1,-0.2 -2,-0.2 0.969 119.0 46.9 -63.7 -55.6 5.6 2.5 -9.7 28 305 B N H X S+ 0 0 86 -4,-3.1 4,-2.9 1,-0.2 5,-0.3 0.826 108.1 59.8 -56.0 -34.5 7.2 -0.7 -11.0 29 306 B H H X S+ 0 0 53 -4,-2.2 4,-1.8 -5,-0.3 -1,-0.2 0.970 111.7 36.2 -59.5 -56.7 9.0 -1.1 -7.6 30 307 B A H X S+ 0 0 0 -4,-1.8 4,-2.9 2,-0.2 -2,-0.2 0.904 116.5 57.5 -62.8 -41.5 5.8 -1.3 -5.6 31 308 B I H X S+ 0 0 19 -4,-2.8 4,-1.4 2,-0.2 3,-0.3 0.963 110.9 38.9 -52.2 -63.2 4.2 -3.2 -8.4 32 309 B N H X S+ 0 0 85 -4,-2.9 4,-1.4 1,-0.2 -1,-0.2 0.822 114.0 58.4 -60.2 -29.6 6.7 -6.1 -8.5 33 310 B Y H X S+ 0 0 2 -4,-1.8 4,-1.8 -5,-0.3 -1,-0.2 0.914 100.5 54.7 -65.7 -42.1 6.7 -5.8 -4.6 34 311 B V H X S+ 0 0 2 -4,-2.9 4,-4.1 -3,-0.3 5,-0.2 0.850 102.0 60.0 -59.0 -33.8 3.0 -6.5 -4.6 35 312 B N H X S+ 0 0 68 -4,-1.4 4,-3.6 2,-0.2 5,-0.3 0.937 102.1 51.1 -59.7 -47.2 3.7 -9.7 -6.6 36 313 B K H X S+ 0 0 83 -4,-1.4 4,-3.5 2,-0.2 -1,-0.2 0.928 116.8 41.5 -52.8 -48.9 6.0 -10.9 -3.8 37 314 B I H X S+ 0 0 0 -4,-1.8 4,-3.4 2,-0.2 -2,-0.2 0.958 115.4 47.6 -64.1 -55.6 3.1 -10.3 -1.4 38 315 B K H < S+ 0 0 49 -4,-4.1 6,-0.2 1,-0.2 -2,-0.2 0.905 120.2 40.6 -53.5 -45.4 0.4 -11.6 -3.6 39 316 B N H >< S+ 0 0 82 -4,-3.6 3,-1.7 -5,-0.2 -2,-0.2 0.942 115.2 49.4 -69.3 -50.8 2.5 -14.7 -4.3 40 317 B R H 3< S+ 0 0 158 -4,-3.5 3,-0.3 -5,-0.3 -2,-0.2 0.894 117.8 41.6 -56.5 -41.8 3.7 -15.2 -0.7 41 318 B F T >< S+ 0 0 5 -4,-3.4 3,-2.4 1,-0.2 -1,-0.3 -0.199 77.0 139.9 -98.9 39.9 0.2 -14.8 0.6 42 319 B Q T < S+ 0 0 147 -3,-1.7 -1,-0.2 1,-0.3 -2,-0.1 0.913 81.3 32.6 -47.6 -51.9 -1.2 -17.0 -2.3 43 320 B G T 3 S+ 0 0 65 -3,-0.3 -1,-0.3 -4,-0.2 3,-0.1 -0.090 104.5 87.5 -98.4 33.9 -3.6 -18.8 0.1 44 321 B Q X> + 0 0 86 -3,-2.4 4,-1.9 -6,-0.2 3,-0.9 -0.566 38.0 160.0-132.1 69.6 -4.0 -15.6 2.2 45 322 B P H 3> S+ 0 0 84 0, 0.0 4,-2.2 0, 0.0 5,-0.3 0.769 78.7 62.5 -60.3 -24.1 -6.9 -13.5 0.7 46 323 B D H 3> S+ 0 0 117 2,-0.2 4,-2.1 3,-0.2 5,-0.2 0.850 105.2 44.7 -69.2 -36.3 -7.1 -11.9 4.1 47 324 B I H <> S+ 0 0 15 -3,-0.9 4,-3.5 2,-0.2 5,-0.2 0.944 116.1 43.6 -72.7 -51.8 -3.6 -10.5 3.8 48 325 B Y H X S+ 0 0 17 -4,-1.9 4,-2.1 -7,-0.3 -2,-0.2 0.944 120.5 42.1 -60.5 -49.1 -3.8 -9.3 0.3 49 326 B K H X S+ 0 0 124 -4,-2.2 4,-2.6 -5,-0.2 5,-0.2 0.949 117.9 46.6 -62.0 -50.6 -7.2 -7.7 0.8 50 327 B A H X S+ 0 0 34 -4,-2.1 4,-2.9 -5,-0.3 -2,-0.2 0.941 109.9 53.3 -56.6 -52.3 -6.2 -6.4 4.3 51 328 B F H X S+ 0 0 3 -4,-3.5 4,-2.0 1,-0.2 -1,-0.2 0.913 111.5 45.9 -50.5 -49.7 -2.9 -4.9 3.0 52 329 B L H X S+ 0 0 12 -4,-2.1 4,-3.1 1,-0.2 -1,-0.2 0.939 113.1 49.2 -60.5 -47.4 -4.8 -3.0 0.2 53 330 B E H X S+ 0 0 104 -4,-2.6 4,-2.5 1,-0.2 -1,-0.2 0.849 106.5 59.2 -60.1 -34.2 -7.4 -1.8 2.7 54 331 B I H X S+ 0 0 8 -4,-2.9 4,-1.5 2,-0.2 -1,-0.2 0.958 112.2 37.1 -58.7 -53.3 -4.6 -0.7 5.0 55 332 B L H X S+ 0 0 0 -4,-2.0 4,-2.5 1,-0.2 3,-0.3 0.947 116.4 53.4 -63.0 -50.9 -3.1 1.6 2.3 56 333 B H H X S+ 0 0 52 -4,-3.1 4,-2.9 1,-0.2 -1,-0.2 0.823 102.5 58.6 -55.4 -34.0 -6.6 2.6 1.1 57 334 B T H X S+ 0 0 36 -4,-2.5 4,-2.0 -5,-0.2 -1,-0.2 0.959 109.6 44.8 -60.5 -46.9 -7.6 3.5 4.7 58 335 B Y H X S+ 0 0 19 -4,-1.5 4,-1.1 -3,-0.3 -2,-0.2 0.947 114.9 46.5 -58.5 -55.2 -4.7 6.0 4.6 59 336 B Q H X S+ 0 0 26 -4,-2.5 4,-1.4 1,-0.2 3,-0.3 0.867 110.4 54.3 -58.1 -40.9 -5.5 7.4 1.2 60 337 B K H X S+ 0 0 87 -4,-2.9 4,-2.9 1,-0.2 3,-0.4 0.928 99.8 58.9 -61.4 -48.5 -9.2 7.7 2.0 61 338 B E H X S+ 0 0 23 -4,-2.0 4,-2.3 1,-0.3 -1,-0.2 0.850 103.4 54.0 -51.3 -35.2 -8.6 9.9 5.1 62 339 B Q H X S+ 0 0 35 -4,-1.1 4,-1.3 -3,-0.3 -1,-0.3 0.934 110.7 46.0 -62.9 -43.9 -6.8 12.4 2.8 63 340 B R H X S+ 0 0 98 -4,-1.4 4,-2.4 -3,-0.4 -2,-0.2 0.884 108.1 58.1 -63.2 -41.4 -10.0 12.4 0.7 64 341 B N H X S+ 0 0 60 -4,-2.9 4,-2.1 1,-0.2 -2,-0.2 0.925 102.6 52.3 -55.6 -50.1 -12.1 12.7 3.9 65 342 B A H <>S+ 0 0 22 -4,-2.3 5,-0.7 1,-0.2 4,-0.5 0.874 110.7 49.1 -55.1 -40.3 -10.4 15.9 4.9 66 343 B K H ><5S+ 0 0 162 -4,-1.3 3,-1.2 1,-0.2 -1,-0.2 0.916 109.3 50.8 -66.5 -45.5 -11.1 17.4 1.5 67 344 B E H 3<5S+ 0 0 153 -4,-2.4 -2,-0.2 1,-0.3 -1,-0.2 0.840 104.1 59.1 -61.8 -34.9 -14.8 16.4 1.6 68 345 B A T 3<5S- 0 0 55 -4,-2.1 3,-0.4 -5,-0.2 -1,-0.3 0.664 115.4-116.6 -69.0 -16.6 -15.2 18.0 5.0 69 346 B G T < 5 - 0 0 69 -3,-1.2 -3,-0.1 -4,-0.5 -2,-0.1 0.110 67.5 -54.5 101.8 -21.6 -14.1 21.4 3.5 70 347 B G S > - 0 0 63 -2,-0.3 4,-1.8 -16,-0.0 3,-1.3 -0.885 61.7 -75.6-154.4 178.7 -0.8 8.0 8.8 78 355 B E H 3> S+ 0 0 4 1,-0.3 4,-3.2 -2,-0.3 5,-0.3 0.795 128.8 68.0 -54.9 -23.2 2.0 5.8 7.5 79 356 B Q H 3> S+ 0 0 130 26,-0.2 4,-1.6 2,-0.2 -1,-0.3 0.893 101.1 42.7 -63.0 -42.2 1.9 4.6 11.1 80 357 B E H <> S+ 0 0 78 -3,-1.3 4,-2.3 2,-0.2 5,-0.3 0.884 115.7 51.3 -71.0 -37.9 -1.5 3.0 10.6 81 358 B V H X S+ 0 0 0 -4,-1.8 4,-2.3 2,-0.2 5,-0.2 0.981 114.7 39.0 -61.6 -60.1 -0.4 1.6 7.3 82 359 B Y H X S+ 0 0 82 -4,-3.2 4,-3.0 1,-0.2 -1,-0.2 0.833 113.5 61.3 -59.1 -34.0 2.8 -0.0 8.5 83 360 B A H X S+ 0 0 26 -4,-1.6 4,-1.0 -5,-0.3 -2,-0.2 0.969 110.6 34.5 -58.2 -60.3 1.0 -1.1 11.6 84 361 B Q H X S+ 0 0 62 -4,-2.3 4,-1.2 1,-0.2 3,-0.3 0.864 119.9 52.2 -65.4 -36.8 -1.7 -3.3 10.0 85 362 B V H X S+ 0 0 0 -4,-2.3 4,-2.1 -5,-0.3 3,-0.5 0.924 102.9 57.7 -65.2 -45.0 0.8 -4.4 7.3 86 363 B A H < S+ 0 0 29 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.798 103.9 54.7 -55.0 -30.6 3.4 -5.5 9.9 87 364 B R H >< S+ 0 0 174 -4,-1.0 3,-0.7 -3,-0.3 -1,-0.2 0.876 108.0 48.2 -71.5 -38.9 0.7 -7.8 11.4 88 365 B L H 3< S+ 0 0 33 -4,-1.2 2,-0.5 -3,-0.5 3,-0.2 0.876 108.5 54.1 -66.6 -43.0 0.2 -9.5 8.0 89 366 B F T >< + 0 0 1 -4,-2.1 3,-1.0 1,-0.2 -1,-0.2 -0.221 68.6 136.8 -90.4 44.0 3.9 -10.0 7.4 90 367 B K T < S+ 0 0 159 -3,-0.7 3,-0.4 -2,-0.5 -1,-0.2 0.976 81.5 23.5 -51.7 -74.3 4.7 -11.8 10.7 91 368 B N T 3 S+ 0 0 130 -3,-0.2 -1,-0.2 1,-0.2 -2,-0.1 0.057 119.9 66.0 -85.6 28.8 6.9 -14.6 9.4 92 369 B Q X> + 0 0 19 -3,-1.0 4,-1.3 1,-0.1 3,-0.7 -0.266 50.6 153.7-142.4 49.4 7.9 -12.6 6.3 93 370 B E H 3> + 0 0 143 -3,-0.4 4,-1.8 1,-0.2 -2,-0.1 0.695 69.5 69.0 -51.5 -22.1 9.9 -9.7 7.7 94 371 B D H 3> S+ 0 0 126 2,-0.2 4,-1.5 1,-0.2 3,-0.4 0.973 97.2 47.1 -64.4 -54.9 11.6 -9.5 4.3 95 372 B L H <> S+ 0 0 11 -3,-0.7 4,-1.7 1,-0.2 -1,-0.2 0.868 110.8 55.4 -53.8 -37.2 8.6 -8.3 2.4 96 373 B L H X S+ 0 0 15 -4,-1.3 4,-1.9 1,-0.2 -1,-0.2 0.889 100.5 58.0 -63.5 -40.1 8.1 -5.8 5.2 97 374 B S H X S+ 0 0 87 -4,-1.8 4,-0.5 -3,-0.4 -1,-0.2 0.904 107.2 47.9 -56.2 -42.8 11.6 -4.4 4.7 98 375 B E H >< S+ 0 0 53 -4,-1.5 3,-1.0 1,-0.2 4,-0.3 0.878 106.1 60.0 -64.4 -40.3 10.7 -3.6 1.0 99 376 B F H >X S+ 0 0 0 -4,-1.7 3,-2.5 1,-0.2 4,-1.0 0.920 95.2 59.7 -53.9 -53.6 7.4 -2.0 2.2 100 377 B G H 3< S+ 0 0 24 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.715 90.5 72.0 -51.6 -24.4 9.1 0.7 4.3 101 378 B Q T << S+ 0 0 126 -3,-1.0 -1,-0.3 -4,-0.5 -2,-0.2 0.748 101.4 43.9 -65.3 -22.9 11.0 2.0 1.2 102 379 B F T <4 S+ 0 0 29 -3,-2.5 -1,-0.2 -4,-0.3 -2,-0.2 0.769 129.6 21.7 -90.0 -30.8 7.7 3.4 -0.1 103 380 B L < + 0 0 3 -4,-1.0 -1,-0.3 -100,-0.1 3,-0.1 -0.951 56.6 173.2-143.9 115.3 6.6 4.9 3.3 104 381 B P + 0 0 105 0, 0.0 2,-1.0 0, 0.0 -4,-0.1 0.348 57.1 97.9-102.8 2.5 9.1 5.7 6.1 105 382 B D 0 0 108 -5,-0.0 -26,-0.2 1,-0.0 -23,-0.1 -0.274 360.0 360.0 -87.7 48.6 6.7 7.4 8.5 106 383 B A 0 0 84 -2,-1.0 -3,-0.1 -28,-0.1 -27,-0.0 -0.815 360.0 360.0-162.4 360.0 6.2 4.3 10.6