==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 30-JAN-09 3G26 . COMPND 2 MOLECULE: GAG POLYPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ROUS SARCOMA VIRUS; . AUTHOR R.L.KINGSTON . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4809.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 67.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 15.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 46.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 150 A A 0 0 110 0, 0.0 24,-0.1 0, 0.0 25,-0.0 0.000 360.0 360.0 360.0-136.5 17.2 2.9 5.0 2 151 A G - 0 0 35 19,-0.2 2,-1.3 1,-0.1 26,-0.1 -0.484 360.0 -97.0 -82.3 153.2 13.6 1.7 4.5 3 152 A P > - 0 0 85 0, 0.0 3,-1.9 0, 0.0 4,-0.4 -0.554 40.3-163.3 -74.7 106.5 11.6 2.8 1.5 4 153 A W G > S+ 0 0 67 -2,-1.3 3,-1.3 21,-0.3 22,-0.1 0.796 81.7 60.9 -61.4 -31.1 9.8 5.6 3.3 5 154 A A G 3 S+ 0 0 53 1,-0.3 -1,-0.3 20,-0.1 17,-0.0 0.637 101.6 55.1 -77.6 -10.0 7.0 5.9 0.7 6 155 A D G < S+ 0 0 121 -3,-1.9 2,-0.4 2,-0.0 -1,-0.3 0.485 83.3 112.4 -90.3 -9.0 5.9 2.3 1.3 7 156 A I < + 0 0 9 -3,-1.3 2,-0.3 -4,-0.4 -3,-0.0 -0.525 35.5 161.0 -79.8 126.4 5.5 2.8 5.0 8 157 A M - 0 0 110 -2,-0.4 2,-0.6 38,-0.0 40,-0.2 -0.983 48.7 -97.5-138.2 151.6 1.9 2.6 6.4 9 158 A Q - 0 0 17 38,-2.6 6,-0.1 -2,-0.3 -2,-0.0 -0.580 46.1-144.8 -70.8 117.3 0.7 1.9 10.0 10 159 A G > - 0 0 20 -2,-0.6 3,-1.6 4,-0.1 39,-0.1 -0.247 23.8-103.0 -80.7 167.6 -0.1 -1.8 10.1 11 160 A P T 3 S+ 0 0 126 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.721 122.7 44.0 -70.6 -16.8 -3.0 -3.3 12.1 12 161 A S T 3 S+ 0 0 126 2,-0.1 2,-0.4 0, 0.0 -3,-0.0 0.331 100.5 92.2-103.4 8.0 -0.7 -4.5 14.9 13 162 A E < - 0 0 36 -3,-1.6 2,-0.1 4,-0.0 -4,-0.0 -0.797 69.8-134.3-104.6 136.7 1.3 -1.2 15.0 14 163 A S > - 0 0 47 -2,-0.4 4,-2.1 1,-0.1 5,-0.2 -0.430 29.8-108.2 -73.2 166.2 0.6 1.7 17.2 15 164 A F H > S+ 0 0 1 1,-0.2 4,-3.0 2,-0.2 5,-0.2 0.940 120.3 49.5 -57.9 -47.0 0.6 5.2 15.8 16 165 A V H > S+ 0 0 43 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.891 107.8 52.9 -65.1 -36.2 3.9 6.1 17.5 17 166 A D H > S+ 0 0 94 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.931 112.5 46.0 -63.1 -41.7 5.6 2.9 16.3 18 167 A F H X S+ 0 0 0 -4,-2.1 4,-3.1 2,-0.2 5,-0.2 0.907 111.3 52.3 -64.4 -44.9 4.6 3.8 12.7 19 168 A A H X S+ 0 0 0 -4,-3.0 4,-2.7 1,-0.2 -1,-0.2 0.908 111.1 47.2 -58.0 -43.4 5.7 7.5 13.3 20 169 A N H X S+ 0 0 95 -4,-2.6 4,-2.4 2,-0.2 -1,-0.2 0.916 113.8 46.5 -66.4 -43.1 9.1 6.3 14.5 21 170 A R H X S+ 0 0 108 -4,-2.2 4,-2.1 2,-0.2 -2,-0.2 0.929 115.1 47.5 -63.2 -46.3 9.5 3.8 11.5 22 171 A L H X S+ 0 0 0 -4,-3.1 4,-2.7 2,-0.2 -2,-0.2 0.934 112.4 48.2 -59.1 -50.5 8.4 6.5 9.0 23 172 A I H X S+ 0 0 40 -4,-2.7 4,-2.9 -5,-0.2 5,-0.2 0.920 110.2 51.7 -62.9 -44.5 10.7 9.2 10.4 24 173 A K H X S+ 0 0 162 -4,-2.4 4,-1.5 1,-0.2 -1,-0.2 0.913 111.9 47.4 -57.2 -42.7 13.8 6.9 10.5 25 174 A A H < S+ 0 0 4 -4,-2.1 4,-0.3 2,-0.2 -21,-0.3 0.906 112.4 48.5 -66.6 -42.8 13.1 6.0 6.8 26 175 A V H >< S+ 0 0 0 -4,-2.7 3,-1.7 1,-0.2 5,-0.3 0.936 109.8 52.3 -63.0 -41.3 12.7 9.6 5.8 27 176 A E H 3< S+ 0 0 94 -4,-2.9 -1,-0.2 1,-0.3 -2,-0.2 0.824 111.5 47.4 -63.4 -29.0 15.9 10.6 7.7 28 177 A G T 3< S+ 0 0 44 -4,-1.5 -1,-0.3 -5,-0.2 -2,-0.2 0.410 97.4 101.6 -89.7 0.3 17.8 7.9 5.8 29 178 A S S < S- 0 0 26 -3,-1.7 -3,-0.1 -4,-0.3 7,-0.0 -0.177 83.5-114.4 -83.2 173.5 16.3 8.9 2.5 30 179 A D S S+ 0 0 154 2,-0.0 -1,-0.1 -2,-0.0 -3,-0.1 0.296 73.5 128.0 -87.6 6.8 17.9 11.0 -0.4 31 180 A L S S- 0 0 35 -5,-0.3 5,-0.1 1,-0.1 -2,-0.0 -0.318 72.8 -97.1 -63.6 145.4 15.4 13.8 0.2 32 181 A P >> - 0 0 72 0, 0.0 3,-2.3 0, 0.0 4,-0.8 -0.360 36.5-116.7 -57.3 140.1 16.7 17.3 0.7 33 182 A P G >4 S+ 0 0 92 0, 0.0 3,-1.1 0, 0.0 4,-0.5 0.882 113.4 57.1 -48.5 -40.8 16.9 18.1 4.4 34 183 A S G 34 S+ 0 0 103 1,-0.2 3,-0.0 2,-0.1 -3,-0.0 0.627 102.6 55.5 -68.9 -12.8 14.2 20.8 4.2 35 184 A C G <> S+ 0 0 45 -3,-2.3 4,-2.3 1,-0.1 5,-0.3 0.658 84.9 84.5 -92.4 -15.2 11.7 18.4 2.7 36 185 A R H S+ 0 0 44 -4,-0.5 4,-2.5 1,-0.2 -1,-0.2 0.921 114.0 45.7 -62.0 -48.0 9.3 17.6 7.8 38 187 A P H > S+ 0 0 73 0, 0.0 4,-2.3 0, 0.0 -1,-0.2 0.895 114.7 48.9 -65.1 -33.1 6.6 18.3 5.2 39 188 A V H X S+ 0 0 32 -4,-2.3 4,-2.7 2,-0.2 -2,-0.2 0.931 111.3 49.9 -67.0 -44.6 6.9 14.8 3.8 40 189 A I H X S+ 0 0 4 -4,-2.9 4,-2.4 -5,-0.3 -1,-0.2 0.937 111.4 49.4 -55.2 -49.6 6.7 13.3 7.3 41 190 A I H X S+ 0 0 17 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.921 111.7 48.0 -56.3 -48.5 3.5 15.5 8.0 42 191 A D H X S+ 0 0 82 -4,-2.3 4,-1.9 1,-0.2 -1,-0.2 0.916 111.4 50.5 -62.8 -41.1 1.9 14.4 4.8 43 192 A C H X S+ 0 0 11 -4,-2.7 4,-2.8 1,-0.2 5,-0.3 0.860 108.3 52.2 -68.4 -33.9 2.7 10.7 5.5 44 193 A F H X S+ 0 0 2 -4,-2.4 4,-0.8 -5,-0.2 -1,-0.2 0.915 113.1 45.7 -61.7 -42.3 1.2 11.0 9.0 45 194 A R H < S+ 0 0 102 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.830 127.0 27.6 -68.1 -31.1 -2.0 12.4 7.5 46 195 A Q H < S+ 0 0 119 -4,-1.9 -2,-0.2 -5,-0.2 -3,-0.2 0.694 122.6 42.1-107.4 -24.5 -2.2 9.8 4.7 47 196 A K H < S+ 0 0 46 -4,-2.8 -38,-2.6 -5,-0.2 -3,-0.2 0.435 86.1 95.8-116.3 -3.3 -0.5 6.6 5.9 48 197 A S S < S- 0 0 4 -4,-0.8 5,-0.1 -5,-0.3 -33,-0.0 -0.341 93.0 -73.3 -74.4 170.2 -1.7 6.2 9.5 49 198 A Q >> - 0 0 71 -39,-0.1 4,-2.5 1,-0.1 3,-0.7 -0.274 52.5-106.6 -59.4 152.9 -4.7 3.9 10.3 50 199 A P H 3> S+ 0 0 71 0, 0.0 4,-2.3 0, 0.0 5,-0.2 0.855 118.9 54.0 -56.2 -38.9 -8.0 5.5 9.2 51 200 A D H 3> S+ 0 0 130 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.879 111.6 46.9 -61.8 -36.6 -9.1 6.3 12.8 52 201 A I H <> S+ 0 0 19 -3,-0.7 4,-3.2 2,-0.2 5,-0.2 0.892 107.5 55.3 -71.5 -42.0 -5.8 8.1 13.3 53 202 A Q H X S+ 0 0 61 -4,-2.5 4,-1.9 1,-0.2 -2,-0.2 0.927 109.2 49.5 -51.0 -44.5 -6.1 10.0 10.0 54 203 A Q H < S+ 0 0 96 -4,-2.3 4,-0.3 -5,-0.2 -2,-0.2 0.852 111.7 47.3 -68.6 -33.4 -9.4 11.2 11.3 55 204 A L H >< S+ 0 0 46 -4,-1.7 3,-1.7 1,-0.2 4,-0.5 0.930 109.2 53.9 -71.7 -43.0 -8.0 12.3 14.6 56 205 A I H >< S+ 0 0 1 -4,-3.2 3,-1.8 1,-0.3 -2,-0.2 0.894 101.0 60.1 -59.2 -36.2 -5.0 14.1 13.0 57 206 A R T 3< S+ 0 0 176 -4,-1.9 -1,-0.3 1,-0.3 -2,-0.2 0.657 95.9 61.8 -74.3 -6.9 -7.4 16.2 10.8 58 207 A T T < S+ 0 0 88 -3,-1.7 -1,-0.3 -4,-0.3 -2,-0.2 0.583 81.8 112.3 -83.3 -14.1 -9.0 17.7 13.9 59 208 A A S < S- 0 0 19 -3,-1.8 10,-0.0 -4,-0.5 -3,-0.0 -0.266 77.7 -98.8 -58.5 146.5 -5.6 19.2 15.0 60 209 A P > - 0 0 63 0, 0.0 3,-1.8 0, 0.0 -1,-0.1 -0.267 24.8-117.6 -64.4 151.8 -5.3 23.1 14.9 61 210 A S T 3 S+ 0 0 119 1,-0.3 -2,-0.1 3,-0.0 0, 0.0 0.686 111.7 71.5 -60.1 -18.9 -3.6 24.8 11.9 62 211 A T T 3 S+ 0 0 106 1,-0.1 2,-1.0 2,-0.0 -1,-0.3 0.625 74.7 88.7 -74.0 -16.1 -1.0 26.0 14.4 63 212 A L < + 0 0 38 -3,-1.8 -1,-0.1 1,-0.2 -4,-0.0 -0.757 48.3 152.1 -86.9 106.8 0.4 22.5 14.8 64 213 A T + 0 0 100 -2,-1.0 -1,-0.2 5,-0.0 -23,-0.1 0.378 41.9 71.1-120.8 -0.1 3.0 22.5 12.0 65 214 A T S > S- 0 0 55 1,-0.1 4,-2.0 -24,-0.0 3,-0.3 -0.873 79.9-116.9-118.3 158.4 5.8 20.0 13.1 66 215 A P H > S+ 0 0 20 0, 0.0 4,-2.8 0, 0.0 5,-0.2 0.913 115.8 53.1 -55.3 -43.0 5.9 16.2 13.3 67 216 A G H > S+ 0 0 36 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.855 106.6 51.6 -62.4 -38.3 6.5 16.4 17.1 68 217 A E H > S+ 0 0 65 -3,-0.3 4,-2.2 2,-0.2 -1,-0.2 0.896 112.2 46.4 -65.4 -40.8 3.5 18.6 17.6 69 218 A I H X S+ 0 0 1 -4,-2.0 4,-2.6 2,-0.2 -2,-0.2 0.909 111.0 52.6 -68.2 -40.8 1.3 16.1 15.7 70 219 A I H X S+ 0 0 30 -4,-2.8 4,-2.8 1,-0.2 5,-0.3 0.943 111.7 45.3 -58.6 -49.6 2.7 13.2 17.6 71 220 A K H X S+ 0 0 129 -4,-2.4 4,-2.6 1,-0.2 -1,-0.2 0.896 110.5 55.5 -59.6 -41.1 2.0 14.9 21.0 72 221 A Y H X S+ 0 0 24 -4,-2.2 4,-0.5 -5,-0.2 -2,-0.2 0.940 114.1 39.2 -58.1 -49.6 -1.5 15.8 19.7 73 222 A V H >X S+ 0 0 0 -4,-2.6 3,-1.4 2,-0.2 4,-0.5 0.965 117.8 46.2 -65.0 -52.1 -2.3 12.1 18.9 74 223 A L H >< S+ 0 0 62 -4,-2.8 3,-1.3 1,-0.3 -2,-0.2 0.884 108.7 56.6 -63.3 -35.8 -0.7 10.5 21.9 75 224 A D H 3< S+ 0 0 119 -4,-2.6 -1,-0.3 -5,-0.3 -2,-0.2 0.657 109.3 48.0 -69.1 -15.0 -2.2 13.0 24.3 76 225 A R H << 0 0 132 -3,-1.4 -1,-0.3 -4,-0.5 -2,-0.2 0.392 360.0 360.0-106.1 1.2 -5.7 12.0 23.0 77 226 A Q << 0 0 157 -3,-1.3 -2,-0.2 -4,-0.5 -1,-0.1 0.480 360.0 360.0 -86.7 360.0 -5.2 8.2 23.2