==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 23-MAR-06 2GG1 . COMPND 2 MOLECULE: GENOME POLYPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: LANGAT VIRUS; . AUTHOR M.MUKHERJEE,K.DUTTA,M.A.WHITE,D.COWBURN,R.O.FOX . 93 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5532.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 30 32.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 18 19.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 303 A T 0 0 118 0, 0.0 2,-0.6 0, 0.0 32,-0.1 0.000 360.0 360.0 360.0 68.4 17.0 -4.9 -3.8 2 304 A Y + 0 0 156 31,-0.1 2,-0.3 34,-0.1 34,-0.2 -0.595 360.0 80.2 -70.1 117.0 15.1 -2.3 -5.8 3 305 A T S S- 0 0 60 -2,-0.6 34,-2.4 31,-0.5 2,-0.8 -0.925 96.5 -16.3 172.2-166.8 12.5 -4.4 -7.5 4 306 A V B S-a 37 0A 103 -2,-0.3 34,-0.1 32,-0.2 2,-0.1 -0.608 79.5-132.1 -64.5 109.6 9.2 -6.1 -6.7 5 307 A a - 0 0 4 -2,-0.8 2,-0.3 32,-0.6 -3,-0.1 -0.373 22.3 -98.3 -72.6 144.6 9.4 -5.8 -2.9 6 308 A D > - 0 0 90 1,-0.1 3,-2.6 -2,-0.1 4,-0.4 -0.474 31.0-123.8 -70.9 127.2 8.7 -8.9 -0.9 7 309 A K T 3 S+ 0 0 94 1,-0.3 78,-3.1 -2,-0.3 79,-0.6 0.549 105.6 50.7 -44.9 -18.5 5.1 -8.8 0.4 8 310 A T T 3 S+ 0 0 80 76,-0.2 -1,-0.3 77,-0.1 -2,-0.1 0.386 87.2 83.3-108.3 5.7 6.1 -9.2 4.1 9 311 A K S < S+ 0 0 61 -3,-2.6 22,-0.2 2,-0.1 -1,-0.1 0.743 77.8 72.9 -86.3 -25.8 8.7 -6.5 4.3 10 312 A F - 0 0 6 -4,-0.4 2,-0.3 20,-0.2 20,-0.2 -0.285 67.9-145.3 -83.1 174.7 6.5 -3.5 4.9 11 313 A T E -B 29 0B 79 18,-0.9 2,-1.5 -2,-0.1 18,-1.4 -0.945 28.3 -94.4-139.3 156.9 4.6 -2.7 8.1 12 314 A W E +B 28 0B 137 -2,-0.3 3,-0.2 1,-0.2 16,-0.2 -0.597 51.5 154.1 -76.4 92.3 1.2 -1.1 8.9 13 315 A K E S- 0 0 139 -2,-1.5 2,-0.3 14,-1.3 15,-0.2 0.914 82.1 -4.5 -77.7 -52.0 2.1 2.5 9.5 14 316 A R E S-B 27 0B 97 13,-3.0 13,-3.1 -3,-0.3 -1,-0.3 -0.937 77.2-138.7-143.7 121.2 -1.4 3.5 8.6 15 317 A A E - 0 0 23 -2,-0.3 10,-0.1 11,-0.2 73,-0.1 -0.267 57.3 -52.0 -72.5 162.5 -4.1 1.1 7.4 16 318 A P E S+ 0 0 11 0, 0.0 2,-0.4 0, 0.0 10,-0.2 -0.085 71.9 175.7 -42.3 115.5 -6.5 2.0 4.5 17 319 A T E -B 25 0B 56 8,-3.8 8,-4.0 -3,-0.2 2,-0.3 -0.979 41.6-100.0-131.1 136.9 -7.9 5.4 5.5 18 320 A D E -B 24 0B 51 -2,-0.4 6,-0.3 6,-0.3 55,-0.1 -0.436 36.2-141.0 -60.1 116.9 -10.3 7.7 3.7 19 321 A S - 0 0 39 4,-1.7 -1,-0.2 -2,-0.3 5,-0.1 0.890 30.7-113.1 -52.3 -53.6 -7.8 10.3 2.3 20 322 A G S S+ 0 0 71 3,-0.4 -1,-0.1 -3,-0.0 -2,-0.1 -0.021 105.8 73.9 141.9 -26.4 -10.0 13.3 2.8 21 323 A H S S- 0 0 173 2,-0.0 3,-0.1 0, 0.0 -2,-0.0 0.187 125.9 -82.0 -99.2 12.2 -10.6 14.3 -0.8 22 324 A D S S+ 0 0 125 1,-0.3 2,-0.2 71,-0.0 -4,-0.0 0.919 105.5 81.1 86.9 53.7 -13.1 11.4 -1.2 23 325 A T S S- 0 0 22 50,-0.1 -4,-1.7 -6,-0.0 -3,-0.4 -0.819 78.5 -88.7-158.6-167.5 -10.7 8.5 -1.9 24 326 A V E -BC 18 72B 0 48,-2.4 48,-2.3 -6,-0.3 2,-0.3 -0.937 27.5-169.7-125.7 145.9 -8.4 6.3 0.2 25 327 A V E -BC 17 71B 14 -8,-4.0 -8,-3.8 -2,-0.4 2,-0.3 -0.932 1.9-174.8-123.6 152.6 -4.9 6.5 1.5 26 328 A M E - C 0 70B 1 44,-1.6 44,-2.4 -2,-0.3 2,-0.5 -0.983 11.8-149.4-142.4 149.7 -2.7 3.9 3.2 27 329 A E E +BC 14 69B 33 -13,-3.1 -13,-3.0 -2,-0.3 -14,-1.3 -0.981 16.6 179.3-129.4 125.1 0.8 4.3 4.6 28 330 A V E -BC 12 68B 3 40,-1.8 40,-2.6 -2,-0.5 2,-0.4 -0.937 14.6-146.5-130.0 146.8 3.4 1.6 4.7 29 331 A G E -B 11 0B 11 -18,-1.4 -18,-0.9 -2,-0.3 37,-0.2 -0.912 13.1-137.0-118.0 138.0 7.0 1.4 6.0 30 332 A F - 0 0 55 -2,-0.4 -20,-0.2 33,-0.2 4,-0.0 -0.516 7.3-153.0 -89.4 156.3 10.0 -0.7 4.6 31 333 A S S S- 0 0 79 -22,-0.2 -1,-0.1 -2,-0.2 -21,-0.1 0.596 82.0 -41.9 -94.8 -19.6 12.6 -2.7 6.5 32 334 A G S S+ 0 0 47 1,-0.2 -2,-0.1 31,-0.1 34,-0.1 0.297 93.9 119.0-176.2 -37.2 15.3 -2.3 3.8 33 335 A T - 0 0 3 -27,-0.1 3,-0.2 -32,-0.1 -1,-0.2 -0.281 52.1-145.3 -53.4 127.2 14.2 -2.7 0.2 34 336 A R - 0 0 148 1,-0.2 -31,-0.5 30,-0.0 28,-0.2 -0.345 63.2 -12.7 -91.7 179.7 15.0 0.6 -1.7 35 337 A P S S+ 0 0 29 0, 0.0 -1,-0.2 0, 0.0 28,-0.2 0.372 89.3 166.2 -24.0 97.0 12.8 2.1 -4.5 36 338 A a - 0 0 0 26,-0.7 2,-0.7 -3,-0.2 -32,-0.2 -0.411 47.3-101.4-111.2-177.6 10.6 -1.0 -5.1 37 339 A R B -a 4 0A 144 -34,-2.4 -32,-0.6 24,-0.2 24,-0.2 -0.903 42.0-141.0-109.9 99.8 7.4 -1.8 -6.9 38 340 A I - 0 0 12 22,-1.5 2,-1.9 -2,-0.7 -34,-0.1 -0.469 1.4-141.5 -74.4 118.8 4.9 -1.9 -4.1 39 341 A P + 0 0 47 0, 0.0 45,-1.6 0, 0.0 2,-0.7 -0.550 36.0 166.5 -76.9 80.5 2.3 -4.7 -4.6 40 342 A V E +D 83 0C 15 -2,-1.9 2,-0.3 43,-0.2 43,-0.2 -0.878 5.1 152.7-102.2 111.8 -0.7 -2.8 -3.3 41 343 A R E -D 82 0C 125 41,-1.8 41,-2.4 -2,-0.7 2,-0.3 -0.761 26.7-147.2-127.1 174.6 -3.9 -4.5 -4.1 42 344 A A E -D 81 0C 0 39,-0.3 10,-2.1 -2,-0.3 11,-0.8 -0.997 1.3-153.1-146.5 145.6 -7.3 -4.4 -2.5 43 345 A V E > -F 51 0D 4 37,-2.1 3,-0.6 -2,-0.3 2,-0.5 -0.898 32.7-102.8-117.7 145.5 -10.1 -6.9 -2.1 44 346 A A E > S-F 47 0D 29 6,-1.0 3,-1.2 3,-0.8 35,-0.3 -0.617 92.4 -26.8 -66.5 119.2 -13.8 -6.2 -1.7 45 347 A H T 3 S- 0 0 97 33,-0.6 -1,-0.2 -2,-0.5 35,-0.1 0.884 124.1 -48.6 40.7 66.6 -14.9 -6.6 1.9 46 348 A G T < S+ 0 0 45 -3,-0.6 -1,-0.3 1,-0.1 -2,-0.1 0.786 115.7 116.2 47.3 34.2 -12.2 -9.2 2.9 47 349 A V E X -F 44 0D 72 -3,-1.2 2,-2.5 3,-0.1 -3,-0.8 -0.896 56.6-153.8-135.7 102.8 -13.0 -11.2 -0.2 48 350 A P E 3 + 0 0 93 0, 0.0 3,-0.2 0, 0.0 -5,-0.1 -0.354 64.5 107.3 -74.5 62.4 -10.2 -11.6 -2.9 49 351 A E E 3 S+ 0 0 174 -2,-2.5 2,-0.4 1,-0.4 -6,-0.0 0.820 86.4 16.5-100.1 -56.3 -12.6 -12.1 -5.8 50 352 A V E < S- 0 0 81 -3,-0.6 -6,-1.0 -6,-0.1 -1,-0.4 -0.981 83.2-120.3-120.6 128.9 -12.3 -8.8 -7.6 51 353 A N E -F 43 0D 97 -2,-0.4 -8,-0.3 -8,-0.2 28,-0.0 -0.536 23.9-173.9 -64.5 119.6 -9.4 -6.4 -6.9 52 354 A V + 0 0 6 -10,-2.1 2,-1.9 -2,-0.4 21,-0.3 0.305 46.3 119.7 -98.3 6.2 -10.9 -3.1 -5.7 53 355 A A + 0 0 16 -11,-0.8 2,-0.9 19,-0.1 21,-0.1 -0.553 28.4 163.2 -77.5 85.0 -7.5 -1.4 -5.7 54 356 A M - 0 0 124 19,-2.0 19,-0.5 -2,-1.9 2,-0.4 -0.895 35.7-141.6 -99.3 100.1 -8.2 1.4 -8.2 55 357 A L - 0 0 35 -2,-0.9 17,-0.3 17,-0.2 -2,-0.1 -0.511 27.5-165.8 -86.2 122.0 -5.3 3.5 -7.2 56 358 A I S S+ 0 0 72 -2,-0.4 16,-0.2 1,-0.3 -1,-0.2 0.796 105.6 34.6 -64.4 -29.0 -5.5 7.2 -7.0 57 359 A T S S+ 0 0 42 14,-2.1 14,-0.5 1,-0.0 -1,-0.3 -0.797 80.4 178.3-123.5 84.5 -1.8 6.9 -6.9 58 360 A P + 0 0 85 0, 0.0 -3,-0.1 0, 0.0 -2,-0.1 0.063 67.3 61.0 -85.3 27.7 -1.2 3.9 -9.2 59 361 A N + 0 0 141 -2,-0.1 2,-0.2 2,-0.0 -3,-0.0 -0.420 66.8 171.1-149.2 66.3 2.6 3.9 -8.9 60 362 A P - 0 0 17 0, 0.0 -22,-1.5 0, 0.0 2,-0.3 -0.547 7.1-175.7 -81.4 149.1 3.7 3.5 -5.3 61 363 A T - 0 0 70 6,-0.4 2,-0.5 -2,-0.2 -24,-0.2 -0.973 24.2-125.5-143.8 147.6 7.4 3.0 -4.4 62 364 A M + 0 0 1 -2,-0.3 -26,-0.7 -26,-0.2 5,-0.3 -0.884 37.7 172.6-102.6 129.7 9.3 2.3 -1.2 63 365 A E B > -G 66 0E 84 3,-2.2 3,-2.1 -2,-0.5 -33,-0.2 -0.374 53.0 -56.4-120.4-166.1 12.1 4.7 -0.5 64 366 A N T 3 S+ 0 0 121 1,-0.3 3,-0.1 -2,-0.1 -30,-0.0 0.600 139.9 34.5 -56.7 -13.0 14.6 5.6 2.2 65 367 A N T 3 S- 0 0 134 1,-0.5 -1,-0.3 2,-0.0 3,-0.2 0.336 125.1 -96.3-120.2 3.1 11.6 6.0 4.7 66 368 A G B < -G 63 0E 4 -3,-2.1 -3,-2.2 -37,-0.2 -1,-0.5 -0.592 60.8 -45.0 112.7-179.8 9.4 3.3 3.2 67 369 A G S S- 0 0 14 -5,-0.3 -6,-0.4 1,-0.2 2,-0.4 0.882 75.4-173.4 -50.4 -42.0 6.5 3.2 0.8 68 370 A G E +C 28 0B 20 -40,-2.6 -40,-1.8 -3,-0.2 2,-0.4 -0.664 46.0 0.6 82.3-130.4 5.1 6.2 2.5 69 371 A F E +C 27 0B 143 -2,-0.4 2,-0.3 -42,-0.2 -42,-0.2 -0.757 62.6 176.2-103.3 138.2 1.7 7.3 1.4 70 372 A I E -C 26 0B 0 -44,-2.4 -44,-1.6 -2,-0.4 2,-0.4 -0.888 19.2-137.1-130.5 165.2 -0.4 5.7 -1.3 71 373 A E E +C 25 0B 51 -14,-0.5 -14,-2.1 -2,-0.3 -15,-0.3 -0.990 27.0 159.9-133.0 128.7 -3.9 6.3 -2.7 72 374 A M E +C 24 0B 0 -48,-2.3 -48,-2.4 -2,-0.4 2,-0.3 -0.837 3.1 156.1-134.0 165.7 -6.5 3.7 -3.5 73 375 A Q - 0 0 25 -19,-0.5 -19,-2.0 -21,-0.3 -50,-0.1 -0.930 19.1-164.4-177.7 172.8 -10.3 3.6 -4.0 74 376 A L - 0 0 51 -2,-0.3 3,-0.2 -21,-0.1 18,-0.1 -0.867 58.0 -64.3-165.8 133.9 -13.2 1.9 -5.6 75 377 A P S S- 0 0 87 0, 0.0 17,-0.1 0, 0.0 3,-0.0 0.047 87.4 -66.5 -28.1 126.5 -16.8 3.2 -6.0 76 378 A P S S+ 0 0 97 0, 0.0 2,-0.3 0, 0.0 17,-0.2 0.249 100.4 86.5 -35.1 134.0 -18.2 3.6 -2.5 77 379 A G E S- E 0 92C 22 15,-1.2 15,-2.0 -3,-0.2 2,-0.6 -0.962 85.4 -30.4 157.1-170.6 -18.5 0.2 -0.9 78 380 A D E + E 0 91C 64 13,-0.3 -33,-0.6 -2,-0.3 13,-0.3 -0.738 63.4 162.6 -89.9 120.0 -16.4 -2.2 1.1 79 381 A N E - E 0 90C 1 11,-1.4 11,-2.8 -2,-0.6 2,-0.3 -0.789 15.7-176.5-125.3 166.8 -12.8 -2.2 0.3 80 382 A I E - E 0 89C 3 -37,-0.3 -37,-2.1 -2,-0.3 2,-0.5 -0.854 22.9-128.7-160.6 139.8 -9.6 -3.4 2.0 81 383 A I E -DE 42 88C 1 7,-1.4 2,-0.8 -2,-0.3 7,-0.6 -0.781 11.0-164.6 -99.6 125.1 -6.0 -3.1 1.0 82 384 A Y E -D 41 0C 70 -41,-2.4 -41,-1.8 -2,-0.5 2,-1.6 -0.868 6.8-171.0-101.1 92.4 -3.8 -6.1 0.8 83 385 A V E > -D 40 0C 4 -2,-0.8 3,-2.7 -43,-0.2 2,-0.6 -0.669 63.8 -71.5 -84.9 85.6 -0.3 -4.5 0.7 84 386 A G T 3 S- 0 0 12 -45,-1.6 -76,-0.2 -2,-1.6 -77,-0.1 -0.507 121.8 -6.5 60.6-112.6 1.4 -7.7 -0.1 85 387 A D T 3 S+ 0 0 71 -78,-3.1 -1,-0.3 -2,-0.6 -77,-0.1 0.658 124.7 92.0 -83.2 -18.1 1.2 -9.6 3.2 86 388 A L < + 0 0 6 -3,-2.7 2,-0.3 -79,-0.6 -3,-0.1 -0.353 52.9 161.5 -72.1 156.6 -0.3 -6.5 4.8 87 389 A N + 0 0 61 -5,-0.3 -5,-0.2 -4,-0.1 2,-0.2 -0.965 17.8 173.2-169.0 158.2 -4.1 -6.0 4.9 88 390 A H E -E 81 0C 92 -7,-0.6 -7,-1.4 -2,-0.3 2,-0.1 -0.646 23.5-136.5-174.8 116.9 -6.9 -4.1 6.5 89 391 A Q E +E 80 0C 83 -9,-0.2 -9,-0.3 -2,-0.2 2,-0.2 -0.436 31.8 152.2 -77.6 153.3 -10.7 -4.0 5.7 90 392 A W E -E 79 0C 80 -11,-2.8 -11,-1.4 -2,-0.1 2,-0.5 -0.640 41.8-127.5-179.5 115.3 -12.7 -0.8 5.7 91 393 A F E -E 78 0C 102 -13,-0.3 2,-0.5 -2,-0.2 -13,-0.3 -0.629 35.1-129.5 -68.2 121.1 -15.9 0.1 3.7 92 394 A Q E E 77 0C 3 -15,-2.0 -15,-1.2 -2,-0.5 -68,-0.1 -0.625 360.0 360.0 -84.3 119.1 -15.0 3.4 2.1 93 395 A K 0 0 164 -2,-0.5 -1,-0.2 -17,-0.2 -15,-0.0 0.140 360.0 360.0-150.2 360.0 -17.6 6.1 2.7