==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 19-JUL-06 2HQN . COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTIONAL REGULATOR; . SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; . AUTHOR E.HONG,W.LEE . 109 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7459.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 66.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 19.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 22.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 115 A G 0 0 139 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 116.5 2.1 0.0 -1.2 2 116 A S - 0 0 113 2,-0.1 2,-0.7 0, 0.0 0, 0.0 -0.936 360.0-142.5-125.6 147.9 5.9 0.3 -1.2 3 117 A G + 0 0 76 -2,-0.3 2,-0.3 2,-0.0 0, 0.0 -0.789 55.5 102.9-112.7 90.0 8.4 0.7 -4.0 4 118 A S - 0 0 67 -2,-0.7 2,-0.5 2,-0.0 -2,-0.1 -0.947 66.0 -99.5-155.0 172.3 11.5 -1.3 -3.3 5 119 A N + 0 0 93 -2,-0.3 2,-0.3 2,-0.0 13,-0.3 -0.876 37.2 168.6-105.8 131.3 13.4 -4.5 -4.1 6 120 A V + 0 0 117 -2,-0.5 2,-0.4 9,-0.2 9,-0.2 -0.941 4.3 176.1-145.7 119.7 13.3 -7.5 -1.9 7 121 A I E -A 14 0A 23 7,-2.3 7,-2.9 -2,-0.3 2,-0.4 -0.974 8.4-164.3-126.8 138.3 14.5 -11.1 -2.6 8 122 A E E -A 13 0A 145 -2,-0.4 2,-0.5 5,-0.2 5,-0.3 -0.959 4.0-161.6-123.7 139.5 14.5 -14.1 -0.4 9 123 A I E > -A 12 0A 8 3,-3.0 2,-2.1 -2,-0.4 3,-1.9 -0.921 64.6 -54.0-123.7 106.7 16.5 -17.4 -0.9 10 124 A G T 3 S- 0 0 59 -2,-0.5 94,-0.1 1,-0.3 -2,-0.0 -0.446 128.1 -15.4 68.8 -83.3 15.3 -20.4 1.1 11 125 A D T 3 S+ 0 0 73 -2,-2.1 13,-0.4 91,-0.4 2,-0.4 0.181 119.3 92.3-136.8 12.5 15.4 -18.9 4.5 12 126 A L E < -A 9 0A 3 -3,-1.9 -3,-3.0 90,-0.1 2,-0.5 -0.922 55.8-156.1-115.6 137.7 17.5 -15.7 3.9 13 127 A T E +AB 8 22A 62 9,-2.3 9,-2.6 -2,-0.4 2,-0.4 -0.944 19.8 167.5-116.6 116.5 16.1 -12.3 3.0 14 128 A I E -AB 7 21A 7 -7,-2.9 -7,-2.3 -2,-0.5 7,-0.2 -0.969 22.1-148.7-129.6 144.3 18.4 -9.9 1.1 15 129 A S E > - B 0 20A 16 5,-2.4 5,-1.8 -2,-0.4 -9,-0.2 -0.948 4.4-164.6-116.8 124.4 17.6 -6.6 -0.6 16 130 A P T > 5S+ 0 0 39 0, 0.0 3,-0.8 0, 0.0 -1,-0.1 0.904 89.8 57.9 -69.7 -43.5 19.6 -5.4 -3.7 17 131 A D T 3 5S+ 0 0 94 1,-0.3 -11,-0.1 -12,-0.2 -2,-0.0 0.923 122.3 26.3 -53.2 -48.9 18.4 -1.8 -3.6 18 132 A E T 3 5S- 0 0 103 -13,-0.3 -1,-0.3 2,-0.1 3,-0.1 0.279 101.3-135.3 -98.0 8.8 19.7 -1.4 -0.0 19 133 A E T < 5 + 0 0 68 -3,-0.8 11,-1.6 1,-0.2 2,-0.3 0.852 56.4 145.1 36.7 47.9 22.4 -4.1 -0.6 20 134 A K E < -BC 15 29A 53 -5,-1.8 -5,-2.4 9,-0.2 2,-0.4 -0.828 39.8-149.6-114.8 153.6 21.4 -5.5 2.8 21 135 A I E -BC 14 28A 5 7,-1.7 7,-3.0 -2,-0.3 2,-0.5 -0.980 4.9-164.9-126.4 134.3 21.2 -9.1 4.1 22 136 A I E +BC 13 27A 52 -9,-2.6 -9,-2.3 -2,-0.4 2,-0.4 -0.954 16.5 162.9-122.1 115.3 18.9 -10.5 6.8 23 137 A Y E > S- C 0 26A 8 3,-2.6 3,-1.9 -2,-0.5 -11,-0.1 -0.968 72.9 -16.4-135.9 119.2 19.7 -13.9 8.3 24 138 A K T 3 S- 0 0 93 -13,-0.4 3,-0.1 -2,-0.4 -1,-0.1 0.839 129.0 -52.6 59.2 33.9 18.2 -15.2 11.5 25 139 A G T 3 S+ 0 0 72 1,-0.3 2,-0.5 0, 0.0 -1,-0.3 0.439 112.2 128.0 82.5 -1.2 17.1 -11.7 12.4 26 140 A R E < -C 23 0A 130 -3,-1.9 -3,-2.6 59,-0.0 2,-0.5 -0.796 47.5-152.9 -94.1 124.1 20.6 -10.5 11.8 27 141 A E E +C 22 0A 117 -2,-0.5 2,-0.4 -5,-0.2 -5,-0.2 -0.839 17.3 174.5 -99.8 127.2 21.1 -7.5 9.4 28 142 A V E -C 21 0A 40 -7,-3.0 -7,-1.7 -2,-0.5 2,-0.5 -0.966 19.4-149.0-136.7 119.1 24.3 -7.2 7.6 29 143 A E E -C 20 0A 126 -2,-0.4 2,-0.5 -9,-0.2 -9,-0.2 -0.753 14.3-168.5 -89.7 124.0 25.1 -4.6 4.9 30 144 A V + 0 0 9 -11,-1.6 2,-0.2 -2,-0.5 -2,-0.0 -0.952 14.4 178.2-117.4 120.3 27.5 -5.7 2.2 31 145 A K + 0 0 97 -2,-0.5 2,-0.2 4,-0.0 -11,-0.0 -0.425 36.2 133.5-115.0 55.9 29.0 -3.2 -0.3 32 146 A G - 0 0 18 -2,-0.2 4,-0.2 1,-0.1 -2,-0.1 -0.550 63.3-120.9-102.3 169.3 31.3 -5.4 -2.3 33 147 A K S > S+ 0 0 163 1,-0.2 3,-1.2 -2,-0.2 4,-0.4 0.938 114.6 43.7 -72.1 -49.1 31.8 -5.8 -6.0 34 148 A P T 3> S+ 0 0 14 0, 0.0 4,-2.9 0, 0.0 5,-0.3 0.680 88.6 91.5 -69.8 -17.9 30.9 -9.5 -6.2 35 149 A F H 3> S+ 0 0 7 1,-0.2 4,-2.0 2,-0.2 5,-0.2 0.772 86.8 52.7 -48.3 -27.1 27.9 -8.8 -3.9 36 150 A E H <> S+ 0 0 79 -3,-1.2 4,-3.1 -4,-0.2 5,-0.3 0.963 109.7 42.9 -74.7 -55.8 26.0 -8.3 -7.2 37 151 A V H > S+ 0 0 7 -4,-0.4 4,-1.8 1,-0.2 -2,-0.2 0.885 120.3 44.9 -57.8 -40.6 26.9 -11.6 -8.9 38 152 A L H X S+ 0 0 5 -4,-2.9 4,-1.8 2,-0.2 -1,-0.2 0.962 116.1 44.1 -68.7 -53.5 26.3 -13.4 -5.6 39 153 A T H X S+ 0 0 13 -4,-2.0 4,-1.4 -5,-0.3 3,-0.5 0.956 115.0 48.1 -56.3 -55.2 23.1 -11.7 -4.7 40 154 A H H >X S+ 0 0 74 -4,-3.1 4,-1.8 1,-0.3 3,-0.5 0.902 115.2 45.6 -53.0 -45.0 21.7 -11.9 -8.2 41 155 A L H 3X>S+ 0 0 0 -4,-1.8 5,-2.8 -5,-0.3 4,-1.6 0.744 106.0 62.1 -71.1 -23.5 22.6 -15.6 -8.3 42 156 A A H 3<5S+ 0 0 2 -4,-1.8 -1,-0.2 -3,-0.5 -2,-0.2 0.787 118.4 26.6 -72.1 -28.2 21.2 -16.0 -4.8 43 157 A R H <<5S+ 0 0 116 -4,-1.4 -2,-0.2 -3,-0.5 -1,-0.2 0.535 133.8 37.1-108.6 -13.9 17.7 -15.0 -6.1 44 158 A H H <5S+ 0 0 96 -4,-1.8 -3,-0.2 -5,-0.3 -2,-0.2 0.776 131.9 23.6-104.6 -41.5 18.2 -16.2 -9.7 45 159 A R T <5 + 0 0 75 -4,-1.6 -3,-0.2 -5,-0.3 -4,-0.1 0.887 68.6 164.9 -91.3 -49.7 20.3 -19.3 -9.3 46 160 A D < + 0 0 63 -5,-2.8 2,-0.3 1,-0.1 55,-0.1 0.825 65.8 40.8 29.1 55.8 19.4 -20.3 -5.7 47 161 A Q S S- 0 0 136 -6,-0.2 53,-3.0 51,-0.1 2,-0.4 -0.974 109.1 -23.2 171.5-163.2 20.9 -23.7 -6.4 48 162 A I E +D 99 0B 76 51,-0.3 2,-0.3 -2,-0.3 51,-0.3 -0.612 62.3 174.3 -77.3 123.7 23.7 -25.6 -8.1 49 163 A V E -D 98 0B 7 49,-2.7 49,-2.5 -2,-0.4 2,-0.2 -0.918 27.6-118.0-130.1 156.2 25.4 -23.5 -10.9 50 164 A S E > -D 97 0B 35 -2,-0.3 4,-3.0 47,-0.2 5,-0.3 -0.641 23.6-120.5 -93.5 150.5 28.4 -23.9 -13.1 51 165 A K H > S+ 0 0 71 45,-1.1 4,-2.4 -2,-0.2 5,-0.1 0.928 116.8 41.9 -51.7 -51.0 31.4 -21.6 -13.2 52 166 A E H > S+ 0 0 165 2,-0.2 4,-2.6 1,-0.2 5,-0.3 0.909 112.6 54.8 -64.3 -43.3 30.8 -20.8 -16.9 53 167 A Q H > S+ 0 0 103 1,-0.2 4,-1.5 2,-0.2 -2,-0.2 0.940 111.9 42.9 -55.7 -51.4 27.1 -20.5 -16.4 54 168 A L H X>S+ 0 0 4 -4,-3.0 4,-2.4 2,-0.2 5,-0.5 0.926 111.1 55.6 -61.7 -46.6 27.4 -18.0 -13.6 55 169 A L H X5S+ 0 0 34 -4,-2.4 4,-1.9 -5,-0.3 -2,-0.2 0.925 116.1 36.5 -52.0 -50.0 30.1 -16.0 -15.5 56 170 A D H <5S+ 0 0 124 -4,-2.6 -1,-0.3 1,-0.2 -2,-0.2 0.695 110.8 65.6 -76.7 -19.7 27.8 -15.6 -18.5 57 171 A A H <5S+ 0 0 39 -4,-1.5 -2,-0.2 -5,-0.3 -1,-0.2 0.913 125.0 8.8 -68.3 -44.1 24.8 -15.3 -16.2 58 172 A I H <5S+ 0 0 33 -4,-2.4 -2,-0.2 -5,-0.1 -3,-0.2 0.821 72.5 167.8-102.7 -48.8 26.1 -12.0 -14.7 59 173 A W << + 0 0 146 -4,-1.9 -3,-0.1 -5,-0.5 -4,-0.1 0.828 18.2 153.7 31.1 51.3 29.0 -11.1 -16.9 60 174 A E + 0 0 75 -5,-0.1 -1,-0.1 5,-0.0 -4,-0.0 0.898 49.6 69.7 -72.2 -42.0 29.0 -7.6 -15.3 61 175 A E S S- 0 0 66 1,-0.1 4,-0.1 5,-0.1 5,-0.1 -0.323 89.7-107.1 -75.6 159.8 32.7 -7.0 -15.9 62 176 A P > - 0 0 88 0, 0.0 3,-2.7 0, 0.0 4,-0.2 0.200 58.1 -63.2 -69.7-164.5 34.1 -6.4 -19.3 63 177 A E G > S+ 0 0 182 1,-0.3 3,-0.6 2,-0.2 -2,-0.1 0.707 134.2 67.8 -57.9 -18.9 36.3 -8.7 -21.4 64 178 A M G 3 S+ 0 0 151 1,-0.2 -1,-0.3 2,-0.1 -3,-0.0 0.395 73.0 94.6 -82.0 3.6 38.8 -8.4 -18.5 65 179 A V G < - 0 0 10 -3,-2.7 4,-0.5 -4,-0.1 -1,-0.2 0.916 69.2-173.0 -60.5 -45.1 36.3 -10.2 -16.3 66 180 A T X - 0 0 50 -3,-0.6 3,-1.5 -4,-0.2 4,-0.2 0.390 42.8 -87.7 62.1 154.4 38.0 -13.6 -16.9 67 181 A P T > S+ 0 0 80 0, 0.0 3,-0.7 0, 0.0 4,-0.5 0.602 123.4 71.1 -69.8 -11.0 36.7 -16.9 -15.8 68 182 A N T 3> S+ 0 0 67 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.625 73.5 85.0 -80.2 -13.9 38.5 -16.4 -12.5 69 183 A V H <> S+ 0 0 29 -3,-1.5 4,-1.9 -4,-0.5 -1,-0.2 0.796 85.5 58.0 -57.2 -28.7 36.0 -13.7 -11.6 70 184 A I H <> S+ 0 0 3 -3,-0.7 4,-2.3 2,-0.2 -1,-0.2 0.973 107.3 42.2 -66.3 -56.5 33.8 -16.4 -10.2 71 185 A E H > S+ 0 0 93 -4,-0.5 4,-2.4 1,-0.2 5,-0.2 0.835 114.8 53.9 -59.7 -33.4 36.3 -17.8 -7.7 72 186 A V H X S+ 0 0 65 -4,-2.1 4,-2.3 2,-0.2 5,-0.3 0.880 109.1 47.0 -69.1 -39.2 37.2 -14.3 -6.7 73 187 A A H X S+ 0 0 6 -4,-1.9 4,-2.3 -5,-0.2 5,-0.3 0.874 114.2 47.5 -70.1 -38.5 33.6 -13.3 -6.0 74 188 A I H X S+ 0 0 3 -4,-2.3 4,-3.0 2,-0.2 -2,-0.2 0.932 116.0 43.0 -68.4 -47.5 33.0 -16.5 -4.0 75 189 A N H X S+ 0 0 102 -4,-2.4 4,-2.2 2,-0.2 5,-0.2 0.956 118.3 44.2 -63.5 -52.4 36.2 -16.1 -1.9 76 190 A Q H X S+ 0 0 92 -4,-2.3 4,-1.2 -5,-0.2 -2,-0.2 0.941 119.3 42.7 -58.1 -50.7 35.8 -12.4 -1.4 77 191 A I H >X S+ 0 0 5 -4,-2.3 4,-0.8 -5,-0.3 3,-0.6 0.942 111.3 54.4 -61.8 -49.8 32.0 -12.7 -0.6 78 192 A R H ><>S+ 0 0 80 -4,-3.0 5,-2.1 1,-0.3 3,-0.6 0.883 112.8 43.9 -51.9 -42.0 32.5 -15.8 1.6 79 193 A Q H 3<5S+ 0 0 103 -4,-2.2 -1,-0.3 1,-0.2 -2,-0.2 0.708 117.2 46.7 -76.7 -20.9 35.0 -13.8 3.6 80 194 A K H <<5S+ 0 0 97 -4,-1.2 -2,-0.2 -3,-0.6 -1,-0.2 0.347 136.7 7.5-100.6 3.6 32.7 -10.8 3.6 81 195 A M T