==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ENDOCYTOSIS/EXOCYTOSIS 24-DEC-00 1HS7 . COMPND 2 MOLECULE: SYNTAXIN VAM3; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR I.DULUBOVA,T.YAMAGUCHI,Y.WANG,T.C.SUDHOF,J.RIZO . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6398.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 89 91.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 70 72.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 23 A T 0 0 160 0, 0.0 2,-0.1 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0 -56.0 -20.6 9.2 -10.2 2 24 A N > - 0 0 99 1,-0.1 4,-2.5 4,-0.0 5,-0.1 -0.423 360.0-127.5 -72.5 145.7 -22.6 7.0 -7.9 3 25 A Q H > S+ 0 0 147 2,-0.2 4,-2.2 1,-0.2 5,-0.2 0.898 110.1 52.3 -58.7 -42.3 -22.2 7.5 -4.1 4 26 A K H > S+ 0 0 141 1,-0.2 4,-1.1 2,-0.2 3,-0.2 0.960 114.5 39.8 -59.4 -53.5 -21.4 3.8 -3.7 5 27 A T H > S+ 0 0 6 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.820 111.5 60.5 -66.1 -29.2 -18.7 3.8 -6.3 6 28 A K H X S+ 0 0 119 -4,-2.5 4,-1.1 1,-0.2 -1,-0.2 0.898 99.9 54.5 -64.1 -39.6 -17.6 7.2 -4.9 7 29 A E H X S+ 0 0 104 -4,-2.2 4,-1.2 1,-0.2 -1,-0.2 0.840 103.8 57.2 -62.4 -32.8 -17.0 5.6 -1.6 8 30 A L H >X S+ 0 0 1 -4,-1.1 4,-2.8 1,-0.2 3,-0.9 0.943 100.7 54.3 -63.6 -48.5 -14.7 3.2 -3.3 9 31 A S H 3X S+ 0 0 34 -4,-1.7 4,-3.6 1,-0.3 -1,-0.2 0.795 102.8 60.3 -56.3 -27.3 -12.5 5.9 -4.8 10 32 A N H 3X S+ 0 0 86 -4,-1.1 4,-1.0 2,-0.2 -1,-0.3 0.888 108.5 42.1 -68.3 -37.6 -12.2 7.1 -1.1 11 33 A L H < S+ 0 0 32 -4,-1.1 3,-2.8 5,-0.1 6,-0.6 0.693 84.6 119.2 -85.6 -19.8 14.1 4.3 3.9 29 51 A I T 3< S+ 0 0 1 -4,-1.0 4,-0.1 1,-0.3 -3,-0.0 -0.206 92.6 0.5 -48.9 126.4 14.3 0.6 4.8 30 52 A G T 3 S+ 0 0 10 64,-0.2 -1,-0.3 1,-0.1 2,-0.3 0.753 113.8 105.7 62.8 23.2 17.9 -0.3 5.6 31 53 A S S < S- 0 0 69 -3,-2.8 2,-3.1 63,-0.1 -1,-0.1 -0.715 102.9 -72.0-138.2 86.6 18.8 3.3 4.9 32 54 A K S S+ 0 0 175 -2,-0.3 -2,-0.1 1,-0.3 -4,-0.1 -0.341 136.2 58.7 65.8 -70.5 19.5 5.4 8.0 33 55 A R S S+ 0 0 142 -2,-3.1 -1,-0.3 -5,-0.1 5,-0.2 0.658 74.3 133.6 -62.2 -15.1 15.9 5.5 9.1 34 56 A D + 0 0 49 -6,-0.6 2,-0.3 4,-0.1 -2,-0.1 -0.138 30.0 152.0 -42.4 101.7 16.1 1.7 9.2 35 57 A S >> - 0 0 50 -2,-0.1 4,-1.8 1,-0.1 3,-1.6 -0.998 57.9-122.6-141.4 143.4 14.5 1.0 12.5 36 58 A K H 3> S+ 0 0 132 -2,-0.3 4,-2.7 1,-0.3 5,-0.2 0.870 115.6 58.4 -49.2 -40.6 12.5 -2.0 13.9 37 59 A E H 3> S+ 0 0 164 2,-0.2 4,-3.2 1,-0.2 -1,-0.3 0.837 105.7 50.8 -60.0 -32.4 9.7 0.4 14.6 38 60 A L H <> S+ 0 0 5 -3,-1.6 4,-3.2 2,-0.2 -2,-0.2 0.984 112.5 41.7 -69.5 -59.3 9.6 1.2 10.9 39 61 A R H X S+ 0 0 43 -4,-1.8 4,-2.6 2,-0.2 5,-0.3 0.852 119.5 48.8 -57.4 -32.3 9.5 -2.4 9.6 40 62 A Y H X S+ 0 0 143 -4,-2.7 4,-4.0 -5,-0.3 5,-0.4 0.966 112.1 45.5 -70.7 -52.2 7.0 -3.0 12.4 41 63 A K H X>S+ 0 0 47 -4,-3.2 5,-2.7 -5,-0.2 4,-1.1 0.848 114.9 52.3 -57.3 -34.4 4.9 0.0 11.5 42 64 A I H <>S+ 0 0 0 -4,-3.2 5,-1.9 3,-0.3 -2,-0.2 0.959 121.9 26.6 -67.0 -55.0 5.2 -1.1 7.9 43 65 A E H <5S+ 0 0 94 -4,-2.6 -2,-0.2 3,-0.2 -3,-0.2 0.722 131.4 41.1 -82.1 -24.4 4.0 -4.7 8.4 44 66 A T H <5S+ 0 0 87 -4,-4.0 -3,-0.2 -5,-0.3 -2,-0.2 0.512 137.9 8.6-100.5 -8.2 1.9 -3.9 11.4 45 67 A E T X5S+ 0 0 91 -4,-1.1 4,-0.8 -5,-0.4 -3,-0.3 0.566 128.4 40.9-136.5 -48.7 0.4 -0.6 10.2 46 68 A L H >>XS+ 0 0 28 -5,-1.9 4,-3.6 1,-0.3 5,-0.6 0.862 120.2 55.0 -36.6 -54.8 1.0 -3.1 4.4 48 70 A P H 3>5S+ 0 0 32 0, 0.0 4,-1.3 0, 0.0 -1,-0.3 0.854 116.9 37.7 -50.6 -37.4 -1.8 -4.4 6.8 49 71 A N H X5S+ 0 0 47 -4,-3.6 4,-2.1 1,-0.2 3,-1.1 0.924 114.2 56.2 -66.0 -43.0 -3.8 -4.5 1.6 52 74 A S H 3X< S- 0 0 41 -4,-1.1 3,-3.5 -3,-0.3 4,-0.3 -0.612 72.9-157.5 -76.5 96.4 -17.0 -3.3 -3.5 61 83 A I T >> S+ 0 0 102 -2,-1.2 3,-2.4 1,-0.3 4,-1.6 0.767 86.0 79.6 -45.1 -29.4 -18.2 -5.2 -6.6 62 84 A L H 3> S+ 0 0 29 1,-0.3 4,-3.4 2,-0.2 -1,-0.3 0.754 81.6 66.9 -53.1 -22.6 -18.3 -1.8 -8.3 63 85 A I H <4 S+ 0 0 3 -3,-3.5 -1,-0.3 -6,-0.4 -2,-0.2 0.834 105.2 40.6 -67.7 -31.6 -14.6 -2.3 -8.7 64 86 A H H <4 S+ 0 0 126 -3,-2.4 -2,-0.2 -4,-0.3 -1,-0.2 0.749 118.8 47.0 -85.9 -27.1 -15.3 -5.1 -11.1 65 87 A Q H < S+ 0 0 152 -4,-1.6 2,-0.9 1,-0.1 -2,-0.2 0.906 101.2 68.5 -80.0 -45.7 -18.2 -3.3 -12.8 66 88 A N X - 0 0 65 -4,-3.4 4,-2.8 -5,-0.2 5,-0.2 -0.670 66.0-165.3 -80.6 106.9 -16.4 0.0 -13.2 67 89 A G H > S+ 0 0 55 -2,-0.9 4,-1.3 2,-0.2 -1,-0.2 0.920 86.7 48.3 -56.6 -47.6 -13.7 -0.5 -15.8 68 90 A K H >> S+ 0 0 171 2,-0.2 3,-1.4 1,-0.2 4,-1.4 0.987 116.8 39.0 -57.0 -66.2 -11.9 2.7 -15.0 69 91 A L H 3> S+ 0 0 15 1,-0.3 4,-1.4 2,-0.2 5,-0.4 0.873 105.4 69.4 -53.2 -39.9 -11.8 2.3 -11.2 70 92 A S H 3X S+ 0 0 25 -4,-2.8 4,-1.3 1,-0.3 -1,-0.3 0.876 105.2 41.7 -46.0 -41.0 -11.1 -1.4 -11.7 71 93 A A H X S+ 0 0 54 -4,-1.4 4,-1.5 2,-0.2 3,-0.5 0.962 110.2 28.4 -47.3 -71.4 -7.4 2.4 -10.2 73 95 A F H 3X>S+ 0 0 7 -4,-1.4 4,-3.6 1,-0.2 5,-0.5 0.894 116.1 63.2 -59.4 -42.3 -6.9 -0.1 -7.3 74 96 A K H 3X5S+ 0 0 102 -4,-1.3 4,-1.7 -5,-0.4 -1,-0.2 0.876 105.6 46.2 -50.8 -40.8 -5.3 -2.6 -9.7 75 97 A N H X S+ 0 0 104 -4,-2.1 3,-1.9 2,-0.2 4,-1.6 0.986 113.2 48.8 -65.4 -58.1 14.6 -7.8 -0.0 90 112 A R H 3X S+ 0 0 70 -4,-1.4 4,-3.4 1,-0.3 3,-0.2 0.862 107.5 56.9 -48.4 -41.7 16.4 -4.7 1.2 91 113 A K H 3< S+ 0 0 41 -4,-3.6 -1,-0.3 1,-0.2 -2,-0.2 0.795 108.7 47.1 -62.6 -27.6 15.1 -5.5 4.7 92 114 A S H << S+ 0 0 93 -3,-1.9 -1,-0.2 -4,-0.9 -2,-0.2 0.728 118.1 40.7 -85.1 -24.6 16.9 -8.9 4.3 93 115 A L H < S+ 0 0 105 -4,-1.6 -2,-0.2 -3,-0.2 -3,-0.2 0.731 115.2 51.9 -93.0 -27.7 20.1 -7.3 3.0 94 116 A F S < S+ 0 0 100 -4,-3.4 -1,-0.2 -5,-0.3 -64,-0.2 -0.549 77.9 179.9-109.8 65.9 20.1 -4.4 5.4 95 117 A P - 0 0 90 0, 0.0 2,-0.2 0, 0.0 -3,-0.1 -0.365 28.1-116.6 -67.3 143.4 19.7 -6.0 8.8 96 118 A L 0 0 44 1,-0.2 -61,-0.1 -5,-0.1 -2,-0.0 -0.561 360.0 360.0 -82.6 145.1 19.6 -3.7 11.9 97 119 A K 0 0 282 -2,-0.2 -1,-0.2 0, 0.0 0, 0.0 0.307 360.0 360.0-173.7 360.0 22.3 -4.0 14.5