==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER REPLICATION, HYDROLASE 02-AUG-06 2HWT . COMPND 2 MOLECULE: PUTATIVE REPLICASE-ASSOCIATED PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: FABA BEAN NECROTIC YELLOWS VIRUS; . AUTHOR S.VEGA-ROCHA,B.GRONENBORN,A.M.GRONENBORN,R.CAMPOS-OLIVAS . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6962.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 58.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 27.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A 0 0 161 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 125.4 -13.1 1.3 18.7 2 3 A R - 0 0 219 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.923 360.0-147.1-115.3 136.8 -10.5 -1.0 17.3 3 4 A Q - 0 0 188 -2,-0.4 2,-0.3 46,-0.0 46,-0.0 -0.686 9.5-145.7-100.4 154.3 -7.6 0.1 15.0 4 5 A V - 0 0 49 -2,-0.3 2,-0.2 43,-0.1 46,-0.1 -0.819 17.8-110.4-118.0 158.4 -6.0 -1.9 12.2 5 6 A I - 0 0 37 -2,-0.3 42,-0.4 44,-0.1 2,-0.1 -0.569 34.1-111.0 -87.0 150.3 -2.5 -2.1 10.9 6 7 A C - 0 0 13 -2,-0.2 2,-0.6 40,-0.1 63,-0.2 -0.390 25.1-122.7 -77.6 156.5 -1.4 -0.8 7.5 7 8 A W E -A 45 0A 13 38,-1.9 38,-1.6 -2,-0.1 2,-0.6 -0.897 20.2-159.0-106.3 115.3 -0.4 -3.1 4.6 8 9 A C E +AB 44 66A 34 58,-1.4 58,-1.0 -2,-0.6 2,-0.3 -0.830 24.8 156.6 -96.8 118.2 3.0 -2.5 3.1 9 10 A F E -AB 43 65A 3 34,-1.2 34,-1.0 -2,-0.6 2,-0.4 -0.908 31.0-141.4-136.6 163.7 3.5 -3.9 -0.4 10 11 A T E -AB 42 64A 53 54,-2.2 54,-1.6 -2,-0.3 2,-0.5 -0.978 9.7-164.1-133.1 121.7 5.7 -3.3 -3.4 11 12 A L E -A 41 0A 17 30,-2.7 30,-2.3 -2,-0.4 2,-0.4 -0.912 7.5-161.1-108.6 121.9 4.6 -3.4 -7.0 12 13 A N E S-A 40 0A 86 -2,-0.5 28,-0.2 1,-0.2 23,-0.0 -0.842 70.8 -2.7-103.9 136.3 7.2 -3.7 -9.8 13 14 A N S S- 0 0 94 26,-1.3 -1,-0.2 -2,-0.4 27,-0.2 0.965 85.4-154.3 49.8 63.9 6.4 -2.8 -13.4 14 15 A P - 0 0 26 0, 0.0 25,-0.1 0, 0.0 -1,-0.1 -0.398 17.7-147.9 -69.7 142.6 2.7 -2.0 -12.8 15 16 A L S S- 0 0 181 1,-0.2 -2,-0.0 -2,-0.1 0, 0.0 0.508 79.9 -7.9 -87.4 -5.7 0.3 -2.4 -15.7 16 17 A S S S- 0 0 74 0, 0.0 -1,-0.2 0, 0.0 2,-0.0 -0.944 83.8 -78.0-179.7 160.4 -1.8 0.5 -14.3 17 18 A P - 0 0 87 0, 0.0 2,-0.1 0, 0.0 -2,-0.0 -0.306 48.3-112.0 -69.7 153.4 -2.3 2.8 -11.4 18 19 A L - 0 0 23 42,-0.0 2,-0.3 -2,-0.0 11,-0.1 -0.272 31.1-161.8 -80.5 170.7 -4.1 1.7 -8.2 19 20 A S - 0 0 80 -2,-0.1 73,-0.1 73,-0.0 -1,-0.0 -0.953 29.2 -75.7-149.2 166.0 -7.5 2.8 -6.9 20 21 A L - 0 0 87 -2,-0.3 2,-0.4 7,-0.1 73,-0.1 -0.254 43.8-137.0 -63.3 151.2 -9.6 2.9 -3.8 21 22 A H - 0 0 44 1,-0.1 -1,-0.1 5,-0.0 35,-0.0 -0.932 10.9-139.2-116.4 136.5 -11.3 -0.3 -2.7 22 23 A D S S+ 0 0 166 -2,-0.4 -1,-0.1 1,-0.2 -2,-0.0 0.751 109.3 48.3 -61.0 -23.6 -14.9 -0.6 -1.4 23 24 A S S S+ 0 0 41 32,-0.1 -1,-0.2 26,-0.0 25,-0.1 0.868 106.9 62.7 -84.2 -41.0 -13.5 -3.0 1.2 24 25 A M - 0 0 11 23,-0.2 23,-0.3 1,-0.1 3,-0.1 -0.001 68.2-148.4 -73.5-175.3 -10.6 -0.8 2.4 25 26 A K S S+ 0 0 115 21,-2.2 69,-1.9 1,-0.4 2,-0.3 0.619 74.6 22.2-125.3 -39.0 -10.9 2.6 4.0 26 27 A Y E -CD 46 93A 68 20,-1.2 20,-1.1 67,-0.2 -1,-0.4 -0.973 59.9-154.8-136.1 150.0 -7.8 4.6 2.8 27 28 A L E +CD 45 92A 1 65,-2.7 65,-2.8 -2,-0.3 2,-0.4 -0.987 15.5 170.3-129.6 126.6 -5.4 4.3 -0.0 28 29 A V E + D 0 91A 3 16,-0.9 16,-0.4 -2,-0.4 2,-0.3 -0.969 13.3 141.6-139.5 121.5 -1.8 5.6 -0.1 29 30 A Y E - D 0 90A 14 61,-1.5 61,-0.7 -2,-0.4 2,-0.3 -0.985 21.7-164.4-153.8 159.3 0.8 4.9 -2.7 30 31 A Q E -E 42 0A 3 12,-1.3 12,-2.4 -2,-0.3 2,-0.3 -0.980 23.2-113.7-146.7 156.4 3.7 6.6 -4.5 31 32 A T E -E 41 0A 11 -2,-0.3 56,-2.8 10,-0.2 55,-2.1 -0.733 32.2-175.3 -94.8 140.2 5.9 6.0 -7.6 32 33 A E E -EF 40 85A 3 8,-2.2 8,-1.6 -2,-0.3 2,-0.5 -0.915 24.3-116.8-132.4 159.0 9.6 5.3 -7.4 33 34 A Q E +E 39 0A 110 51,-2.0 2,-0.3 -2,-0.3 6,-0.2 -0.825 58.8 97.0 -99.5 131.3 12.5 4.9 -9.8 34 35 A G + 0 0 20 4,-1.0 -2,-0.1 2,-0.5 50,-0.0 -0.964 46.3 53.6 171.5 175.4 14.3 1.5 -10.0 35 36 A E S S- 0 0 93 -2,-0.3 3,-0.2 2,-0.1 -1,-0.2 0.906 116.3 -31.8 37.8 84.5 14.7 -1.8 -11.7 36 37 A A S S- 0 0 73 1,-0.2 -2,-0.5 -3,-0.1 0, 0.0 0.138 102.8 -53.8 64.6 172.3 15.2 -0.6 -15.3 37 38 A G S S+ 0 0 69 -4,-0.1 -1,-0.2 2,-0.0 -3,-0.1 0.777 113.8 99.0 -52.0 -27.4 13.7 2.5 -16.7 38 39 A N S S- 0 0 75 -3,-0.2 -4,-1.0 1,-0.1 2,-0.3 0.075 70.4-129.2 -53.6 172.5 10.3 1.1 -15.6 39 40 A I E - E 0 33A 65 -6,-0.2 -26,-1.3 -25,-0.1 2,-0.3 -0.816 12.3-149.5-126.0 166.4 8.7 2.2 -12.3 40 41 A H E -AE 12 32A 22 -8,-1.6 -8,-2.2 -2,-0.3 2,-0.4 -0.964 13.9-126.1-137.0 153.3 7.3 0.6 -9.2 41 42 A F E +AE 11 31A 16 -30,-2.3 -30,-2.7 -2,-0.3 2,-0.3 -0.826 27.8 174.4-102.7 137.3 4.6 1.5 -6.7 42 43 A Q E +AE 10 30A 46 -12,-2.4 -12,-1.3 -2,-0.4 2,-0.3 -0.986 22.2 97.6-144.8 130.9 5.2 1.6 -2.9 43 44 A G E -A 9 0A 6 -34,-1.0 -34,-1.2 -2,-0.3 2,-0.4 -0.974 60.1 -75.4 178.6-169.2 3.0 2.6 -0.0 44 45 A Y E -A 8 0A 34 -16,-0.4 -16,-0.9 -2,-0.3 2,-0.4 -0.933 31.0-167.6-119.6 141.0 0.6 1.6 2.7 45 46 A I E -AC 7 27A 4 -38,-1.6 -38,-1.9 -2,-0.4 2,-0.6 -0.990 8.5-153.2-131.1 127.9 -3.0 0.4 2.5 46 47 A E E - C 0 26A 65 -20,-1.1 -21,-2.2 -2,-0.4 -20,-1.2 -0.879 15.1-156.2-103.5 118.3 -5.5 0.0 5.3 47 48 A M - 0 0 4 -2,-0.6 -23,-0.2 -42,-0.4 -43,-0.1 -0.141 37.4 -87.4 -80.6-179.3 -8.3 -2.5 4.7 48 49 A K S S- 0 0 133 -25,-0.1 -24,-0.1 -24,-0.1 -44,-0.1 0.965 72.6 -93.0 -53.3 -60.2 -11.7 -2.6 6.4 49 50 A K S S+ 0 0 129 3,-0.1 2,-0.9 -46,-0.0 -44,-0.1 -0.199 111.4 44.9 179.2 -74.5 -10.5 -4.6 9.4 50 51 A R S S+ 0 0 258 -46,-0.1 2,-0.6 2,-0.0 -2,-0.0 -0.274 81.3 128.8 -89.3 48.6 -10.9 -8.4 9.3 51 52 A T - 0 0 30 -2,-0.9 -4,-0.2 -28,-0.0 5,-0.1 -0.920 44.2-154.9-110.8 115.8 -9.5 -8.5 5.7 52 53 A S >> - 0 0 83 -2,-0.6 3,-2.4 1,-0.1 4,-0.8 -0.100 44.3 -81.1 -76.4 179.8 -6.7 -11.0 5.0 53 54 A L H 3> S+ 0 0 54 1,-0.3 4,-3.4 2,-0.2 5,-0.4 0.800 125.0 74.5 -52.4 -29.8 -4.1 -10.7 2.3 54 55 A A H 3> S+ 0 0 62 1,-0.2 4,-1.0 2,-0.2 -1,-0.3 0.820 93.4 53.4 -53.9 -32.3 -6.7 -12.2 -0.0 55 56 A G H <> S+ 0 0 11 -3,-2.4 4,-0.5 2,-0.2 -1,-0.2 0.927 115.3 36.4 -70.3 -46.1 -8.4 -8.8 0.1 56 57 A M H >X S+ 0 0 1 -4,-0.8 3,-1.7 1,-0.2 4,-1.5 0.935 115.4 53.4 -72.1 -48.3 -5.4 -6.8 -1.0 57 58 A K H 3< S+ 0 0 95 -4,-3.4 -1,-0.2 1,-0.3 -2,-0.2 0.798 98.0 68.4 -57.0 -28.9 -4.1 -9.3 -3.4 58 59 A K H 3< S+ 0 0 172 -4,-1.0 -1,-0.3 -5,-0.4 -2,-0.2 0.829 103.0 44.0 -60.3 -32.4 -7.5 -9.3 -5.0 59 60 A L H << S+ 0 0 48 -3,-1.7 -1,-0.2 -4,-0.5 -2,-0.2 0.861 133.7 17.1 -80.4 -38.5 -6.8 -5.8 -6.2 60 61 A I S >< S- 0 0 26 -4,-1.5 2,-0.8 3,-0.0 3,-0.5 -0.612 75.7-169.3-137.6 75.7 -3.3 -6.5 -7.4 61 62 A P T 3 S+ 0 0 103 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.534 73.7 40.7 -69.7 105.6 -2.7 -10.3 -7.8 62 63 A G T 3 S+ 0 0 65 -2,-0.8 2,-0.3 1,-0.3 -5,-0.0 0.617 87.5 110.4 126.3 32.9 1.0 -10.7 -8.2 63 64 A A S < S- 0 0 22 -3,-0.5 2,-0.7 -52,-0.1 -1,-0.3 -0.818 70.5 -99.3-129.2 169.3 2.7 -8.3 -5.8 64 65 A H E +B 10 0A 129 -54,-1.6 -54,-2.2 -2,-0.3 2,-0.3 -0.813 45.1 177.1 -95.0 111.5 4.8 -8.5 -2.7 65 66 A F E -B 9 0A 19 -2,-0.7 2,-0.3 -56,-0.2 -56,-0.2 -0.769 13.6-168.9-112.6 158.6 2.7 -7.8 0.4 66 67 A E E +B 8 0A 94 -58,-1.0 -58,-1.4 -2,-0.3 3,-0.3 -0.864 17.2 169.4-151.9 112.1 3.6 -7.9 4.1 67 68 A K + 0 0 113 -2,-0.3 -62,-0.1 -60,-0.2 -1,-0.1 0.111 54.1 106.9-106.9 19.2 1.1 -7.7 7.0 68 69 A R S S- 0 0 219 -60,-0.1 -1,-0.2 1,-0.0 4,-0.1 0.486 94.5-114.5 -75.1 -1.9 3.8 -8.6 9.7 69 70 A R > + 0 0 130 -3,-0.3 3,-0.6 -63,-0.2 -2,-0.1 0.941 55.1 163.8 68.3 49.0 3.5 -4.9 10.7 70 71 A G T 3 S+ 0 0 54 1,-0.2 -1,-0.1 -4,-0.2 -3,-0.1 0.525 84.3 17.3 -75.1 -4.3 7.1 -4.1 9.7 71 72 A T T 3> S+ 0 0 35 -65,-0.2 4,-2.6 3,-0.0 2,-0.7 0.039 78.3 167.4-155.3 30.5 6.1 -0.4 9.8 72 73 A Q T <4 S- 0 0 102 -3,-0.6 -67,-0.1 1,-0.3 -65,-0.0 -0.349 87.3 -13.3 -56.1 100.3 2.9 -0.2 11.9 73 74 A G T >4 S+ 0 0 43 -2,-0.7 3,-0.5 1,-0.0 -1,-0.3 0.025 126.6 82.5 93.6 -28.2 2.7 3.5 12.6 74 75 A E G >> S+ 0 0 147 -3,-0.3 4,-1.7 1,-0.2 3,-1.5 0.774 79.7 64.7 -78.4 -27.8 6.3 4.1 11.4 75 76 A A G 3< S+ 0 0 7 -4,-2.6 -1,-0.2 1,-0.3 -3,-0.1 0.597 85.7 75.8 -70.3 -10.1 5.2 4.2 7.8 76 77 A R G <4 S+ 0 0 204 -3,-0.5 -1,-0.3 -5,-0.3 -2,-0.2 0.686 111.2 22.8 -74.1 -18.5 3.2 7.3 8.6 77 78 A A T <4 S+ 0 0 93 -3,-1.5 3,-0.2 -4,-0.1 -2,-0.2 0.780 135.2 29.2-110.1 -62.2 6.5 9.3 8.7 78 79 A Y S < S+ 0 0 133 -4,-1.7 2,-1.6 1,-0.2 -3,-0.2 0.960 73.4 153.8 -66.7 -53.1 9.1 7.5 6.6 79 80 A S - 0 0 34 -5,-0.5 2,-0.2 -8,-0.1 -1,-0.2 -0.394 66.1 -5.3 61.7 -88.4 6.7 5.9 4.2 80 81 A M S S- 0 0 18 -2,-1.6 2,-0.7 -3,-0.2 3,-0.1 -0.737 86.4 -81.5-128.4 177.2 9.1 5.5 1.3 81 82 A K > - 0 0 115 -2,-0.2 3,-0.6 1,-0.2 4,-0.4 -0.740 28.5-164.1 -86.9 114.2 12.6 6.5 0.4 82 83 A E G > S+ 0 0 153 -2,-0.7 3,-0.6 1,-0.2 -1,-0.2 0.845 88.7 64.4 -63.7 -34.5 12.8 10.1 -0.8 83 84 A D G 3 S+ 0 0 159 1,-0.3 -1,-0.2 -3,-0.1 -2,-0.0 0.856 118.1 26.0 -57.3 -36.4 16.2 9.5 -2.3 84 85 A T G < S+ 0 0 69 -3,-0.6 -51,-2.0 -52,-0.0 2,-0.3 0.268 95.4 125.6-109.8 7.9 14.6 7.0 -4.7 85 86 A R B < +F 32 0A 96 -3,-0.6 -53,-0.2 -4,-0.4 3,-0.1 -0.536 28.0 171.0 -72.6 127.9 11.2 8.7 -4.7 86 87 A L + 0 0 76 -55,-2.1 -54,-0.2 1,-0.3 2,-0.2 0.853 61.7 1.6-100.9 -57.3 9.9 9.6 -8.1 87 88 A E S S- 0 0 103 -56,-2.8 -1,-0.3 3,-0.0 3,-0.1 -0.755 89.5 -9.9-127.6 174.4 6.3 10.6 -7.7 88 89 A G - 0 0 19 1,-0.3 2,-0.2 -2,-0.2 -58,-0.1 -0.383 24.0-143.4 89.5-170.0 3.8 11.1 -4.8 89 90 A P - 0 0 78 0, 0.0 2,-0.4 0, 0.0 -1,-0.3 0.592 49.1-174.8 -69.7 172.1 2.9 10.8 -2.2 90 91 A W E -D 29 0A 82 -61,-0.7 -61,-1.5 -2,-0.2 2,-0.4 -0.994 11.6-164.4-140.8 131.2 -0.7 10.2 -3.1 91 92 A E E +D 28 0A 124 -2,-0.4 2,-0.3 -63,-0.2 -63,-0.2 -0.940 14.2 168.3-118.3 136.9 -3.8 9.8 -0.9 92 93 A Y E +D 27 0A 104 -65,-2.8 -65,-2.7 -2,-0.4 2,-0.2 -0.949 38.9 29.0-142.2 161.2 -7.2 8.3 -2.0 93 94 A G E D 26 0A 41 -2,-0.3 -67,-0.2 1,-0.2 -68,-0.1 -0.636 360.0 360.0 93.1-150.8 -10.4 7.2 -0.4 94 95 A E 0 0 170 -69,-1.9 -1,-0.2 -2,-0.2 -68,-0.2 0.730 360.0 360.0 -51.9 360.0 -11.9 8.5 2.8