==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 30-AUG-02 1IYM . COMPND 2 MOLECULE: EL5; . SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; . AUTHOR E.KATOH,S.KATOH,E.MINAMI,T.YAMAZAKI . 55 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4278.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 24 43.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 5.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 20.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 5 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 127 A A 0 0 118 0, 0.0 2,-1.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 174.5 20.4 2.4 -3.0 2 128 A M - 0 0 160 1,-0.1 2,-1.0 2,-0.0 0, 0.0 -0.577 360.0-178.8 -78.0 92.8 17.7 4.1 -5.0 3 129 A D + 0 0 111 -2,-1.5 2,-0.2 1,-0.1 -1,-0.1 -0.160 55.5 94.7 -85.3 45.6 15.3 5.1 -2.1 4 130 A D + 0 0 158 -2,-1.0 2,-0.2 2,-0.1 -1,-0.1 -0.601 63.0 71.0-136.2 76.9 12.8 6.6 -4.6 5 131 A G S S- 0 0 59 -2,-0.2 2,-1.0 0, 0.0 -2,-0.1 -0.459 96.9 -23.4-152.1-133.3 10.1 4.1 -5.6 6 132 A V - 0 0 72 -2,-0.2 9,-0.8 9,-0.1 2,-0.4 -0.777 61.8-169.9 -97.3 100.1 7.1 2.5 -4.0 7 133 A E - 0 0 87 -2,-1.0 2,-0.7 7,-0.1 7,-0.1 -0.735 26.4-119.8 -92.2 135.1 7.6 2.5 -0.2 8 134 A C > - 0 0 0 -2,-0.4 4,-1.1 5,-0.3 23,-0.1 -0.571 16.1-156.9 -72.2 111.7 5.3 0.5 2.0 9 135 A A T 4 S+ 0 0 37 -2,-0.7 -1,-0.2 2,-0.1 22,-0.1 0.641 91.4 46.0 -66.0 -8.7 3.6 3.1 4.2 10 136 A V T 4 S+ 0 0 52 3,-0.1 -1,-0.1 -3,-0.0 -2,-0.1 0.879 134.0 5.5 -98.9 -66.4 3.0 0.2 6.6 11 137 A C T 4 S- 0 0 59 2,-0.1 -2,-0.1 0, 0.0 3,-0.1 0.661 84.5-140.0 -94.0 -15.1 6.2 -1.9 7.0 12 138 A L < + 0 0 125 -4,-1.1 2,-0.5 1,-0.2 -3,-0.1 0.917 48.3 151.5 59.8 39.9 8.4 0.4 4.9 13 139 A A - 0 0 39 3,-0.0 -5,-0.3 1,-0.0 -1,-0.2 -0.896 58.0-104.5-107.3 126.0 10.0 -2.6 3.3 14 140 A E - 0 0 92 -2,-0.5 2,-0.6 1,-0.1 -7,-0.1 -0.205 42.2-115.4 -46.6 115.7 11.4 -2.2 -0.3 15 141 A L + 0 0 46 -9,-0.8 2,-0.2 15,-0.1 -1,-0.1 -0.381 50.6 172.5 -58.7 107.3 8.8 -4.1 -2.3 16 142 A E > - 0 0 129 -2,-0.6 3,-0.9 1,-0.1 5,-0.2 -0.642 39.3 -78.7-113.0 173.6 10.8 -7.0 -3.7 17 143 A D T 3 S+ 0 0 169 1,-0.2 -1,-0.1 -2,-0.2 3,-0.1 -0.407 108.2 53.8 -70.4 147.5 9.8 -10.1 -5.7 18 144 A G T 3 S+ 0 0 86 1,-0.5 -1,-0.2 -2,-0.1 2,-0.2 0.232 92.7 86.5 112.4 -13.3 8.3 -13.0 -3.6 19 145 A E S < S- 0 0 74 -3,-0.9 -1,-0.5 14,-0.0 2,-0.4 -0.586 76.7-123.1-111.2 177.1 5.5 -10.8 -2.0 20 146 A E - 0 0 130 -2,-0.2 2,-0.1 -3,-0.1 11,-0.1 -0.596 32.1-176.6-121.0 72.1 2.0 -9.9 -3.1 21 147 A A - 0 0 21 -2,-0.4 2,-0.5 11,-0.3 11,-0.3 -0.429 15.3-145.1 -68.9 140.8 1.9 -6.1 -3.1 22 148 A R E -A 31 0A 119 9,-0.9 9,-1.8 -2,-0.1 2,-0.3 -0.922 10.0-160.8-112.3 122.6 -1.5 -4.7 -4.0 23 149 A F E -A 30 0A 134 -2,-0.5 7,-0.2 7,-0.2 6,-0.1 -0.746 14.8-132.0 -98.7 147.1 -1.8 -1.4 -6.0 24 150 A L - 0 0 18 5,-0.9 29,-0.1 -2,-0.3 28,-0.1 -0.647 5.4-136.0 -99.0 158.7 -5.0 0.7 -6.1 25 151 A P S S+ 0 0 94 0, 0.0 -1,-0.1 0, 0.0 28,-0.1 0.873 98.1 61.1 -78.8 -43.3 -6.7 2.1 -9.1 26 152 A R S S- 0 0 140 26,-0.3 26,-0.1 25,-0.3 27,-0.1 0.921 136.3 -8.2 -52.3 -45.5 -7.5 5.7 -7.8 27 153 A C S S- 0 0 50 24,-0.2 -1,-0.1 2,-0.1 3,-0.1 0.704 82.1-126.5-121.0 -50.6 -3.8 6.3 -7.3 28 154 A G + 0 0 34 1,-0.3 2,-0.1 -6,-0.0 -2,-0.0 0.405 44.5 162.6 110.5 -0.0 -1.7 3.2 -7.9 29 155 A H - 0 0 67 -6,-0.1 -5,-0.9 1,-0.1 2,-0.5 -0.319 32.7-142.0 -53.2 120.1 0.2 3.4 -4.6 30 156 A G E +A 23 0A 1 -7,-0.2 -7,-0.2 -3,-0.1 2,-0.2 -0.775 30.2 164.4 -93.9 127.2 1.6 -0.2 -4.3 31 157 A F E -A 22 0A 2 -9,-1.8 -9,-0.9 -2,-0.5 2,-0.2 -0.554 41.3 -79.0-123.5-170.8 1.6 -1.7 -0.8 32 158 A H > - 0 0 0 -11,-0.3 4,-1.7 -2,-0.2 -11,-0.3 -0.584 25.9-129.5 -92.0 159.3 2.0 -5.3 0.5 33 159 A A T 4 S+ 0 0 7 -2,-0.2 4,-0.4 3,-0.2 -1,-0.1 0.841 113.8 40.1 -74.4 -28.2 -0.8 -7.9 0.5 34 160 A E T > S+ 0 0 123 2,-0.2 4,-2.4 3,-0.1 5,-0.3 0.933 121.1 39.3 -84.1 -52.0 -0.0 -8.5 4.1 35 161 A C H > S+ 0 0 18 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.924 114.9 54.3 -65.9 -40.4 0.6 -4.9 5.3 36 162 A V H < S+ 0 0 11 -4,-1.7 4,-0.5 1,-0.2 -1,-0.2 0.828 110.7 48.2 -63.3 -27.0 -2.3 -3.6 3.1 37 163 A D H >> S+ 0 0 79 -4,-0.4 4,-1.1 2,-0.2 3,-1.0 0.943 112.5 44.7 -78.8 -48.6 -4.5 -6.2 4.9 38 164 A M H 3< S+ 0 0 175 -4,-2.4 -2,-0.2 1,-0.3 -1,-0.2 0.797 110.9 58.2 -65.4 -23.3 -3.4 -5.3 8.5 39 165 A W T 3< S+ 0 0 100 -4,-1.9 4,-0.4 -5,-0.3 -1,-0.3 0.736 100.9 58.1 -77.9 -20.5 -3.8 -1.7 7.4 40 166 A L T X4 + 0 0 56 -3,-1.0 3,-2.1 -4,-0.5 -2,-0.2 0.982 56.1 130.3 -70.8 -73.4 -7.4 -2.3 6.6 41 167 A G T 3< S- 0 0 65 -4,-1.1 -1,-0.1 1,-0.3 3,-0.1 0.741 106.8 -16.3 25.1 35.7 -8.7 -3.5 9.9 42 168 A S T 3 S+ 0 0 112 1,-0.2 2,-0.8 3,-0.0 -1,-0.3 -0.447 123.1 86.2 141.0 -62.6 -11.5 -0.8 9.3 43 169 A H < - 0 0 121 -3,-2.1 2,-0.7 -4,-0.4 -1,-0.2 -0.568 53.3-170.3 -72.8 111.4 -10.1 1.5 6.6 44 170 A S + 0 0 78 -2,-0.8 9,-0.8 -3,-0.1 10,-0.4 -0.285 60.1 77.9 -95.0 49.3 -11.1 -0.1 3.2 45 171 A T S S- 0 0 27 -2,-0.7 7,-0.2 7,-0.2 -2,-0.0 -0.816 94.8 -57.0-142.9-176.6 -8.9 2.4 1.3 46 172 A C - 0 0 0 -2,-0.2 6,-0.1 5,-0.2 -16,-0.0 -0.481 40.7-144.2 -69.7 135.2 -5.3 3.2 0.4 47 173 A P S S+ 0 0 11 0, 0.0 -1,-0.1 0, 0.0 -3,-0.0 0.703 93.3 43.7 -75.0 -24.4 -3.1 3.6 3.4 48 174 A L S S+ 0 0 97 -19,-0.1 -2,-0.0 3,-0.1 -40,-0.0 0.890 137.1 5.1 -93.0 -40.6 -0.9 6.4 2.0 49 175 A C S S- 0 0 42 2,-0.1 -4,-0.0 -20,-0.0 0, 0.0 0.809 91.5-125.2-107.4 -44.8 -3.5 8.7 0.3 50 176 A R + 0 0 197 1,-0.2 2,-1.1 -7,-0.0 -6,-0.1 0.721 48.2 157.2 102.3 35.5 -6.8 7.1 1.3 51 177 A L - 0 0 61 -6,-0.0 -25,-0.3 2,-0.0 -24,-0.2 -0.747 42.3-130.0 -91.5 97.7 -8.3 6.7 -2.1 52 178 A T - 0 0 47 -2,-1.1 -26,-0.3 -7,-0.2 -7,-0.2 0.023 8.3-147.4 -42.0 154.9 -10.9 3.9 -1.6 53 179 A V S S+ 0 0 58 -9,-0.8 2,-0.2 -28,-0.1 -1,-0.1 0.731 74.3 79.1-100.8 -27.9 -10.6 1.1 -4.2 54 180 A V 0 0 103 -10,-0.4 -10,-0.0 1,-0.1 -2,-0.0 -0.502 360.0 360.0 -79.6 150.5 -14.3 0.1 -4.4 55 181 A V 0 0 207 -2,-0.2 -1,-0.1 0, 0.0 -2,-0.1 -0.126 360.0 360.0-104.6 360.0 -16.6 2.3 -6.5