==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 01-JUN-01 1JB6 . COMPND 2 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 1-ALPHA; . SOURCE 2 SYNTHETIC: YES; . AUTHOR N.NARAYANA,Q.-X.HUA,M.A.WEISS . 61 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5914.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 72.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 60.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A X 0 0 228 0, 0.0 2,-0.1 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 -69.9 20.1 -8.1 -7.4 2 2 A V - 0 0 97 1,-0.1 0, 0.0 2,-0.1 0, 0.0 -0.444 360.0-107.6 -66.8 136.5 16.9 -6.7 -5.9 3 3 A S > - 0 0 67 1,-0.1 4,-2.2 -2,-0.1 5,-0.2 -0.300 16.1-125.3 -66.8 150.6 13.9 -8.6 -7.2 4 4 A K H > S+ 0 0 172 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.866 112.4 55.8 -61.8 -37.2 11.6 -6.9 -9.7 5 5 A L H > S+ 0 0 107 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.907 107.1 48.5 -62.7 -42.9 8.7 -7.6 -7.4 6 6 A S H > S+ 0 0 43 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.934 112.6 47.4 -63.1 -47.1 10.4 -5.9 -4.4 7 7 A Q H X S+ 0 0 111 -4,-2.2 4,-2.5 1,-0.2 -2,-0.2 0.915 112.7 49.8 -60.4 -44.0 11.2 -2.8 -6.4 8 8 A L H X S+ 0 0 95 -4,-2.5 4,-2.5 1,-0.2 -1,-0.2 0.887 110.4 49.8 -63.4 -40.0 7.6 -2.7 -7.8 9 9 A Q H X S+ 0 0 111 -4,-2.3 4,-2.6 2,-0.2 5,-0.2 0.914 112.4 47.1 -65.3 -42.6 6.1 -3.0 -4.3 10 10 A T H X S+ 0 0 95 -4,-2.4 4,-2.2 1,-0.2 -2,-0.2 0.915 114.3 47.5 -64.7 -42.2 8.4 -0.2 -3.0 11 11 A E H X S+ 0 0 118 -4,-2.5 4,-2.3 -5,-0.2 -2,-0.2 0.887 113.1 48.8 -65.1 -42.2 7.5 2.0 -5.9 12 12 A L H X S+ 0 0 98 -4,-2.5 4,-2.8 2,-0.2 -2,-0.2 0.928 111.0 48.3 -65.8 -48.6 3.8 1.3 -5.6 13 13 A X H X S+ 0 0 83 -4,-2.6 4,-2.6 2,-0.2 5,-0.2 0.948 112.5 49.8 -57.9 -49.5 3.6 2.0 -1.9 14 14 A A H X S+ 0 0 50 -4,-2.2 4,-2.2 1,-0.2 -1,-0.2 0.933 113.1 45.8 -54.8 -48.5 5.5 5.2 -2.4 15 15 A A H X S+ 0 0 62 -4,-2.3 4,-1.4 1,-0.2 -1,-0.2 0.887 111.3 52.9 -63.6 -39.0 3.2 6.3 -5.1 16 16 A L H <>S+ 0 0 80 -4,-2.8 5,-1.6 2,-0.2 3,-0.2 0.918 108.6 49.4 -63.6 -43.9 0.1 5.4 -3.1 17 17 A L H ><5S+ 0 0 85 -4,-2.6 3,-1.8 1,-0.2 4,-0.2 0.941 110.0 50.6 -61.3 -45.3 1.2 7.4 -0.2 18 18 A E H 3<5S+ 0 0 174 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.767 101.5 62.9 -64.6 -24.7 1.9 10.4 -2.3 19 19 A S T 3<5S- 0 0 93 -4,-1.4 -1,-0.3 -3,-0.2 -2,-0.2 0.472 129.4 -93.9 -78.7 -0.5 -1.6 10.1 -3.9 20 20 A G T < 5 - 0 0 61 -3,-1.8 -3,-0.2 -4,-0.2 -2,-0.2 0.713 55.5-176.5 97.0 23.7 -3.0 10.7 -0.4 21 21 A L < - 0 0 56 -5,-1.6 -1,-0.2 -4,-0.2 2,-0.1 -0.253 26.6-120.6 -52.7 136.4 -3.5 7.2 0.9 22 22 A S > - 0 0 55 1,-0.1 4,-1.3 4,-0.0 3,-0.2 -0.455 5.5-126.7 -85.5 156.3 -5.2 7.3 4.3 23 23 A K H > S+ 0 0 86 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.806 111.6 61.0 -67.3 -29.8 -3.8 6.0 7.6 24 24 A E H > S+ 0 0 83 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.897 101.3 51.9 -65.1 -37.4 -7.1 4.1 8.0 25 25 A A H > S+ 0 0 38 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.873 112.5 46.3 -65.4 -35.3 -6.4 2.2 4.8 26 26 A L H X S+ 0 0 69 -4,-1.3 4,-3.0 2,-0.2 -2,-0.2 0.893 111.1 51.1 -72.9 -40.6 -2.9 1.3 6.2 27 27 A I H X S+ 0 0 67 -4,-2.6 4,-1.4 2,-0.2 -2,-0.2 0.907 109.9 50.2 -63.2 -42.4 -4.3 0.3 9.6 28 28 A Q H < S+ 0 0 162 -4,-2.4 4,-0.3 2,-0.2 -1,-0.2 0.916 112.7 46.5 -62.8 -43.5 -6.9 -2.0 7.9 29 29 A A H >< S+ 0 0 48 -4,-1.7 3,-1.9 1,-0.2 -2,-0.2 0.928 109.8 53.1 -64.3 -44.6 -4.2 -3.6 5.8 30 30 A L H >< S+ 0 0 93 -4,-3.0 3,-2.0 1,-0.3 -1,-0.2 0.793 93.7 76.2 -60.4 -26.5 -1.9 -4.0 8.8 31 31 A G T 3< S+ 0 0 53 -4,-1.4 -1,-0.3 1,-0.3 -2,-0.2 0.713 71.9 79.9 -58.6 -22.1 -4.9 -5.7 10.5 32 32 A E T < 0 0 164 -3,-1.9 -1,-0.3 -4,-0.3 -2,-0.1 0.641 360.0 360.0 -62.2 -11.5 -4.3 -8.9 8.4 33 33 A W < 0 0 256 -3,-2.0 0, 0.0 -4,-0.1 0, 0.0 -0.468 360.0 360.0-107.1 360.0 -1.6 -9.7 11.0 34 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 35 36 B S > 0 0 116 0, 0.0 4,-1.2 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 168.7 4.5 -15.8 32.3 36 37 B K H > + 0 0 194 2,-0.2 4,-1.9 1,-0.2 5,-0.1 0.745 360.0 59.1 -74.9 -20.4 3.4 -13.1 34.6 37 38 B L H > S+ 0 0 109 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.958 104.9 45.5 -71.4 -51.6 5.1 -10.6 32.4 38 39 B S H > S+ 0 0 52 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.839 113.8 52.2 -61.3 -30.7 3.1 -11.4 29.2 39 40 B Q H X S+ 0 0 106 -4,-1.2 4,-2.4 2,-0.2 -1,-0.2 0.914 109.9 46.7 -70.7 -43.8 -0.1 -11.4 31.3 40 41 B L H X S+ 0 0 96 -4,-1.9 4,-2.5 2,-0.2 -2,-0.2 0.864 111.6 53.2 -65.5 -36.1 0.6 -8.0 32.7 41 42 B Q H X S+ 0 0 112 -4,-2.4 4,-2.4 2,-0.2 -2,-0.2 0.947 110.6 45.1 -64.0 -48.4 1.4 -6.7 29.3 42 43 B T H X S+ 0 0 93 -4,-2.1 4,-2.2 1,-0.2 -2,-0.2 0.902 114.3 50.0 -61.9 -43.1 -1.9 -8.0 27.8 43 44 B E H X S+ 0 0 108 -4,-2.4 4,-2.3 1,-0.2 -1,-0.2 0.903 111.0 48.8 -62.6 -43.2 -3.8 -6.6 30.8 44 45 B L H X S+ 0 0 94 -4,-2.5 4,-2.5 2,-0.2 -2,-0.2 0.908 110.2 50.9 -65.4 -41.3 -2.1 -3.2 30.4 45 46 B X H X S+ 0 0 96 -4,-2.4 4,-2.3 2,-0.2 5,-0.2 0.939 111.7 47.0 -62.3 -46.6 -2.8 -2.9 26.7 46 47 B A H X S+ 0 0 38 -4,-2.2 4,-2.4 1,-0.2 -2,-0.2 0.935 112.1 50.7 -59.7 -46.8 -6.5 -3.7 27.2 47 48 B A H X S+ 0 0 60 -4,-2.3 4,-0.8 1,-0.2 -1,-0.2 0.896 109.5 51.6 -58.5 -42.8 -6.7 -1.2 30.0 48 49 B L H ><>S+ 0 0 82 -4,-2.5 5,-1.9 2,-0.2 3,-0.9 0.939 110.0 47.1 -61.0 -49.5 -5.1 1.5 27.9 49 50 B L H ><5S+ 0 0 84 -4,-2.3 3,-1.6 1,-0.3 -2,-0.2 0.923 111.5 51.1 -59.5 -44.4 -7.4 1.0 24.9 50 51 B E H 3<5S+ 0 0 168 -4,-2.4 -1,-0.3 1,-0.3 -2,-0.2 0.648 104.1 59.8 -68.5 -14.5 -10.5 1.0 27.2 51 52 B S T <<5S- 0 0 93 -3,-0.9 -1,-0.3 -4,-0.8 -2,-0.2 0.482 131.9 -88.6 -90.7 -5.0 -9.2 4.3 28.7 52 53 B G T < 5 + 0 0 62 -3,-1.6 2,-0.3 -4,-0.4 -3,-0.2 0.612 57.7 178.4 109.0 16.5 -9.3 6.0 25.4 53 54 B L < - 0 0 49 -5,-1.9 -1,-0.2 -6,-0.1 5,-0.0 -0.344 27.8-133.6 -55.2 112.1 -5.9 5.3 23.9 54 55 B S > - 0 0 57 -2,-0.3 4,-1.1 1,-0.1 3,-0.5 -0.192 12.3-118.4 -67.3 159.9 -6.0 6.9 20.5 55 56 B K H > S+ 0 0 98 1,-0.2 4,-2.2 2,-0.2 5,-0.1 0.818 112.8 64.6 -67.8 -30.3 -4.9 5.3 17.3 56 57 B E H > S+ 0 0 88 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.846 100.4 50.5 -61.9 -34.9 -2.3 8.0 16.9 57 58 B A H > S+ 0 0 41 -3,-0.5 4,-1.1 2,-0.2 -1,-0.2 0.851 109.4 50.3 -72.2 -35.0 -0.5 6.9 20.1 58 59 B L H X S+ 0 0 67 -4,-1.1 4,-1.5 2,-0.2 -2,-0.2 0.888 109.2 52.5 -69.1 -38.9 -0.4 3.3 18.9 59 60 B I H < S+ 0 0 69 -4,-2.2 3,-0.4 1,-0.2 -2,-0.2 0.930 107.3 49.8 -62.7 -47.9 1.1 4.4 15.5 60 61 B Q H < S+ 0 0 174 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.786 111.4 51.4 -62.0 -27.5 3.9 6.4 17.1 61 62 B A H < 0 0 86 -4,-1.1 -1,-0.2 -5,-0.1 -2,-0.2 0.779 360.0 360.0 -79.2 -28.8 4.6 3.3 19.3 62 63 B L < 0 0 162 -4,-1.5 -2,-0.2 -3,-0.4 -3,-0.2 0.952 360.0 360.0 -80.5 360.0 4.7 1.0 16.2