==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 08-JUN-01 1JC8 . COMPND 2 MOLECULE: DDAP: (ACE)IWGDSGKLI(DNP)TTA ANALOGUE OF HIV . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.PHAN CHAN DU,D.LIMAL,V.SEMETEY,H.DALI,M.JOLIVET, . 12 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1551.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 1 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A I 0 0 240 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -57.8 5.2 10.9 -1.0 2 3 A W + 0 0 140 1,-0.2 2,-1.1 11,-0.0 0, 0.0 0.939 360.0 178.7 -77.5 -52.9 4.0 7.2 -1.4 3 4 A G - 0 0 75 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 -0.699 54.3 -23.2 88.8 -93.6 0.5 7.3 0.4 4 5 A D - 0 0 99 -2,-1.1 5,-0.0 1,-0.1 0, 0.0 -0.906 53.8-116.1-146.3 171.5 -0.9 3.7 0.1 5 6 A S - 0 0 51 -2,-0.2 -1,-0.1 4,-0.0 4,-0.0 0.970 35.1-143.0 -79.1 -58.9 -0.6 0.5 -2.1 6 7 A G S S+ 0 0 67 2,-0.0 3,-0.1 0, 0.0 -2,-0.0 0.942 70.3 77.5 89.8 66.0 -4.1 0.0 -3.7 7 8 A K S S- 0 0 203 1,-0.0 0, 0.0 0, 0.0 0, 0.0 0.125 110.4 -40.9-157.9 -72.0 -4.9 -3.7 -3.9 8 9 A L 0 0 177 1,-0.4 -2,-0.0 4,-0.0 4,-0.0 0.388 360.0 360.0-135.2 -77.6 -6.1 -5.3 -0.5 9 10 A I 0 0 132 -3,-0.1 -1,-0.4 2,-0.1 -4,-0.0 -0.836 360.0 360.0 -97.0 360.0 -4.0 -4.1 2.6 10 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 11 12 A T 0 0 146 0, 0.0 2,-0.3 0, 0.0 -7,-0.1 0.000 360.0 360.0 360.0 71.5 0.8 -1.1 4.1 12 13 A T 0 0 70 -4,-0.0 -8,-0.0 0, 0.0 -4,-0.0 -0.752 360.0 360.0-139.1 86.3 2.4 -3.2 1.2 13 14 A A 0 0 151 -2,-0.3 -8,-0.0 -8,-0.0 -11,-0.0 -0.692 360.0 360.0 -95.2 360.0 5.6 -1.3 -0.1