==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 20-JUL-98 1JIC . COMPND 2 MOLECULE: SSO7D; . SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; . AUTHOR R.CONSONNI,L.SANTOMO,L.ZETTA . 62 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5634.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 66.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 33.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 16.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 84 0, 0.0 15,-1.1 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 -71.7 -0.3 1.8 -11.4 2 2 A T E -A 15 0A 62 13,-0.2 2,-0.6 14,-0.1 13,-0.2 -0.608 360.0-142.7 -98.7 146.9 -2.6 -0.5 -9.3 3 3 A V E -A 14 0A 25 11,-2.7 11,-2.0 -2,-0.2 2,-0.8 -0.910 9.1-152.8-107.2 118.0 -1.7 -2.9 -6.3 4 4 A K E +A 13 0A 124 -2,-0.6 2,-0.4 9,-0.2 9,-0.2 -0.812 22.5 179.8 -92.6 104.4 -3.6 -6.3 -6.2 5 5 A F E -A 12 0A 15 7,-2.2 7,-2.5 -2,-0.8 2,-0.1 -0.923 25.9-122.4-113.1 130.9 -3.8 -7.2 -2.4 6 6 A K E +A 11 0A 127 -2,-0.4 5,-0.2 5,-0.2 3,-0.1 -0.435 30.2 171.5 -74.3 140.3 -5.5 -10.5 -1.0 7 7 A Y S S- 0 0 169 3,-1.3 -1,-0.1 -2,-0.1 4,-0.1 0.744 70.2 -45.9-114.0 -81.2 -8.3 -10.1 1.6 8 8 A K S S- 0 0 199 2,-0.3 2,-0.1 0, 0.0 -1,-0.0 0.313 119.8 -28.8-113.1-100.4 -10.0 -13.5 2.3 9 9 A G S S+ 0 0 82 -3,-0.1 2,-0.3 -2,-0.0 -3,-0.0 -0.410 125.2 87.7-102.7 54.1 -10.7 -15.2 -1.2 10 10 A E - 0 0 120 -2,-0.1 -3,-1.3 -5,-0.0 2,-0.6 -0.909 66.3-149.2-154.4 114.5 -11.1 -11.8 -3.0 11 11 A E E -A 6 0A 125 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.815 19.9-150.3 -98.2 113.7 -8.0 -9.9 -4.5 12 12 A K E -A 5 0A 95 -7,-2.5 -7,-2.2 -2,-0.6 2,-0.6 -0.720 3.7-142.6 -98.0 127.4 -8.7 -6.1 -4.3 13 13 A Q E +A 4 0A 123 -2,-0.4 2,-0.4 -9,-0.2 -9,-0.2 -0.775 25.3 176.6 -94.3 115.8 -7.3 -3.5 -6.8 14 14 A V E -A 3 0A 15 -11,-2.0 -11,-2.7 -2,-0.6 2,-0.1 -0.969 26.5-117.5-126.9 135.4 -6.2 -0.2 -5.2 15 15 A D E -A 2 0A 57 -2,-0.4 4,-0.3 -13,-0.2 3,-0.3 -0.379 10.3-133.2 -77.6 146.5 -4.5 2.9 -6.9 16 16 A I S > S+ 0 0 49 -15,-1.1 3,-1.0 1,-0.2 -1,-0.1 0.867 106.4 55.7 -62.6 -41.2 -0.9 4.3 -6.0 17 17 A S T 3 S+ 0 0 108 1,-0.2 -1,-0.2 -16,-0.1 -2,-0.0 0.814 102.2 57.6 -58.5 -34.9 -2.2 8.0 -6.0 18 18 A K T 3 S+ 0 0 114 -3,-0.3 16,-2.0 15,-0.1 2,-0.8 0.500 76.8 105.9 -76.0 -4.9 -5.0 7.1 -3.3 19 19 A I E < -B 33 0B 24 -3,-1.0 14,-0.2 -4,-0.3 3,-0.2 -0.684 48.1-177.1 -81.6 107.9 -2.3 5.7 -0.7 20 20 A K E + 0 0 151 12,-1.4 2,-0.3 -2,-0.8 13,-0.2 0.921 67.0 7.4 -78.6 -48.7 -2.3 8.6 1.9 21 21 A K E -B 32 0B 157 11,-1.4 11,-2.2 2,-0.0 2,-0.4 -0.977 65.8-175.3-136.3 128.3 0.5 7.3 4.4 22 22 A V E +B 31 0B 48 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.965 7.4 176.7-120.1 136.3 2.7 4.1 3.8 23 23 A W E -B 30 0B 110 7,-2.0 7,-1.1 -2,-0.4 2,-0.9 -0.992 28.6-135.8-144.5 131.9 5.2 2.8 6.5 24 24 A R E +B 29 0B 138 -2,-0.3 5,-0.2 5,-0.2 7,-0.0 -0.765 25.5 176.1 -87.3 102.0 7.6 -0.3 6.6 25 25 A V - 0 0 106 3,-1.0 -1,-0.2 -2,-0.9 4,-0.2 0.908 53.9 -84.9 -76.5 -44.9 7.1 -1.8 10.1 26 26 A G S S+ 0 0 47 2,-1.5 -1,-0.0 0, 0.0 21,-0.0 -0.460 110.4 14.6 177.6 -92.1 9.4 -5.0 9.8 27 27 A K S S+ 0 0 198 -2,-0.1 20,-1.2 19,-0.1 2,-0.2 0.717 131.3 39.9 -72.3 -25.6 8.0 -8.2 8.3 28 28 A M E S- C 0 46B 107 18,-0.2 -2,-1.5 19,-0.1 -3,-1.0 -0.742 71.1-137.6-118.9 168.8 4.9 -6.3 6.9 29 29 A I E -BC 24 45B 13 16,-1.5 16,-1.8 -2,-0.2 2,-0.3 -0.926 25.5-161.7-126.7 102.7 4.3 -2.8 5.2 30 30 A S E -BC 23 44B 27 -7,-1.1 -7,-2.0 -2,-0.4 2,-0.3 -0.645 11.2-178.1 -90.1 144.5 1.0 -1.2 6.6 31 31 A F E -BC 22 43B 0 12,-2.1 12,-1.9 -2,-0.3 2,-0.6 -0.999 26.1-143.7-147.7 139.5 -0.8 1.6 4.7 32 32 A T E -BC 21 42B 34 -11,-2.2 -11,-1.4 -2,-0.3 -12,-1.4 -0.912 25.4-173.4-104.2 108.5 -3.8 4.0 5.1 33 33 A Y E -BC 19 41B 44 8,-2.1 8,-1.6 -2,-0.6 -14,-0.2 -0.836 18.3-131.9 -98.4 139.8 -5.6 4.6 1.7 34 34 A D E + C 0 40B 38 -16,-2.0 6,-0.2 -2,-0.4 3,-0.0 -0.616 25.7 173.0 -89.5 151.3 -8.5 7.2 1.2 35 35 A E - 0 0 134 4,-0.8 2,-0.1 -2,-0.2 5,-0.1 0.517 55.3 -29.3-140.2 -12.0 -11.7 6.1 -0.7 36 36 A G S S+ 0 0 59 3,-0.2 2,-1.3 0, 0.0 -2,-0.0 -0.523 109.5 6.3-168.7-120.3 -14.5 8.8 -0.6 37 37 A G S S- 0 0 70 1,-0.2 3,-0.1 -2,-0.1 -3,-0.0 -0.545 122.3 -53.0 -91.1 70.3 -15.9 11.6 1.7 38 38 A G S S+ 0 0 63 -2,-1.3 2,-0.4 1,-0.2 -1,-0.2 0.925 100.9 127.6 62.9 51.1 -13.2 11.6 4.5 39 39 A K - 0 0 153 2,-0.0 -4,-0.8 0, 0.0 2,-0.5 -0.897 43.0-158.4-141.7 99.2 -13.3 7.8 5.3 40 40 A T E -C 34 0B 79 -2,-0.4 2,-0.3 -6,-0.2 -6,-0.2 -0.744 2.0-152.8 -93.8 121.3 -9.8 6.0 5.2 41 41 A G E -C 33 0B 15 -8,-1.6 -8,-2.1 -2,-0.5 2,-0.6 -0.680 13.9-135.9 -86.2 144.3 -9.5 2.2 4.8 42 42 A R E +C 32 0B 206 -2,-0.3 -10,-0.2 -10,-0.2 2,-0.2 -0.892 27.7 173.6-111.7 111.2 -6.4 0.4 6.3 43 43 A G E -C 31 0B 7 -12,-1.9 -12,-2.1 -2,-0.6 2,-0.3 -0.514 14.6-150.4-105.1 176.5 -4.6 -2.3 4.1 44 44 A A E -C 30 0B 49 -14,-0.2 2,-0.3 -2,-0.2 -14,-0.2 -0.995 8.6-174.5-151.1 145.6 -1.4 -4.4 4.5 45 45 A V E -C 29 0B 7 -16,-1.8 -16,-1.5 -2,-0.3 5,-0.1 -0.988 24.1-124.8-144.6 128.8 1.3 -6.0 2.1 46 46 A S E > -C 28 0B 53 -2,-0.3 4,-1.9 -18,-0.2 -18,-0.2 -0.053 28.8-103.5 -70.9 171.4 4.3 -8.3 3.0 47 47 A E T 4 S+ 0 0 66 -20,-1.2 3,-0.1 2,-0.2 -19,-0.1 0.958 122.0 34.4 -66.8 -53.7 8.0 -7.7 2.1 48 48 A K T 4 S+ 0 0 216 1,-0.2 -1,-0.2 0, 0.0 -2,-0.0 0.839 115.8 61.0 -62.5 -35.7 8.3 -10.3 -0.8 49 49 A D T 4 S+ 0 0 54 2,-0.0 -2,-0.2 -44,-0.0 -1,-0.2 0.846 85.8 79.3 -60.9 -40.1 4.6 -9.5 -1.8 50 50 A A S < S- 0 0 7 -4,-1.9 -47,-0.0 1,-0.1 -5,-0.0 -0.624 72.0-159.8 -72.5 119.3 5.3 -5.7 -2.6 51 51 A P - 0 0 112 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.991 43.6 -61.0 -75.7 -68.6 6.9 -5.7 -6.2 52 52 A K S > S+ 0 0 143 3,-0.0 4,-1.7 4,-0.0 -2,-0.1 0.519 108.0 71.5-152.3 -49.9 8.9 -2.5 -7.1 53 53 A E H > S+ 0 0 101 1,-0.2 4,-0.8 2,-0.2 3,-0.1 0.903 105.7 39.4 -58.1 -52.6 7.1 1.0 -7.2 54 54 A L H > S+ 0 0 36 1,-0.2 4,-0.8 2,-0.2 -1,-0.2 0.821 113.8 56.8 -65.2 -33.9 6.6 1.6 -3.4 55 55 A L H > S+ 0 0 70 1,-0.2 4,-0.8 2,-0.1 -2,-0.2 0.848 101.4 55.6 -65.0 -39.0 10.1 0.1 -2.5 56 56 A Q H <>S+ 0 0 107 -4,-1.7 5,-0.7 -3,-0.1 -1,-0.2 0.835 101.7 55.5 -64.8 -38.7 12.2 2.6 -4.8 57 57 A M H >X>S+ 0 0 91 -4,-0.8 3,-0.9 1,-0.2 4,-0.6 0.935 107.0 44.4 -64.8 -53.1 10.8 6.0 -3.2 58 58 A L H 3<5S+ 0 0 111 -4,-0.8 -1,-0.2 1,-0.2 -2,-0.1 0.681 120.8 38.5 -72.4 -21.2 11.7 5.5 0.6 59 59 A E T 3<5S+ 0 0 145 -4,-0.8 -1,-0.2 -3,-0.1 -2,-0.1 -0.201 131.8 15.2-121.8 45.3 15.3 4.1 0.1 60 60 A K T <45S+ 0 0 168 -3,-0.9 -3,-0.2 0, 0.0 -2,-0.1 0.137 116.0 47.4-163.6 -58.3 16.6 6.3 -3.0 61 61 A Q T << 0 0 128 -5,-0.7 -3,-0.1 -4,-0.6 -4,-0.1 0.986 360.0 360.0 -73.8 -84.6 14.6 9.5 -3.9 62 62 A K < 0 0 249 -5,-0.6 -1,-0.2 0, 0.0 -3,-0.1 -0.888 360.0 360.0-161.6 360.0 13.8 11.8 -0.8