==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN 25-OCT-06 2JM8 . COMPND 2 MOLECULE: SPECTRIN ALPHA CHAIN, BRAIN; . SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; . AUTHOR N.A.J.VAN NULAND,S.CASARES,E.AB,H.ESHUIS,O.LOPEZ-MAYORGA, . 62 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3984.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 72.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 33.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 22.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 212 0, 0.0 3,-0.1 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0 16.4 -15.7 -8.8 -2.8 2 2 A D - 0 0 98 1,-0.6 2,-0.3 3,-0.0 4,-0.1 0.167 360.0 -1.4-178.6 -40.8 -12.4 -9.8 -4.3 3 3 A E S S- 0 0 61 2,-0.1 2,-2.1 31,-0.0 -1,-0.6 -0.929 92.1 -71.6-155.8 177.0 -9.9 -9.8 -1.4 4 4 A T S S- 0 0 112 -2,-0.3 2,-0.1 -3,-0.1 0, 0.0 -0.509 107.4 -3.6 -78.4 74.5 -9.9 -9.1 2.3 5 5 A G - 0 0 29 -2,-2.1 29,-0.1 30,-0.0 -2,-0.1 -0.202 51.1-176.6 122.9 149.7 -10.2 -5.3 2.2 6 6 A K + 0 0 68 -2,-0.1 2,-2.9 26,-0.1 27,-2.9 0.284 28.1 140.1-135.8 -88.9 -10.4 -2.5 -0.4 7 7 A E - 0 0 69 25,-0.2 54,-0.2 1,-0.1 25,-0.1 -0.059 62.9-124.7 68.1 -39.4 -10.6 1.1 0.7 8 8 A L - 0 0 74 -2,-2.9 53,-1.9 25,-0.1 2,-0.3 0.718 26.1-154.6 65.4 124.6 -8.2 2.2 -2.1 9 9 A V E -AB 31 60A 0 22,-2.6 22,-3.1 51,-0.2 2,-0.6 -0.962 9.5-133.5-128.9 150.6 -5.0 4.1 -1.4 10 10 A L E -AB 30 59A 44 49,-2.7 49,-2.7 -2,-0.3 2,-0.6 -0.901 19.7-129.8-106.4 120.8 -2.9 6.4 -3.4 11 11 A A E + B 0 58A 1 18,-2.3 17,-2.8 -2,-0.6 47,-0.2 -0.586 27.0 178.2 -68.5 115.2 0.9 6.0 -3.5 12 12 A L + 0 0 65 45,-2.2 2,-0.3 -2,-0.6 -1,-0.2 0.868 67.0 31.3 -85.6 -42.3 2.4 9.4 -2.7 13 13 A Y S S- 0 0 122 44,-1.2 2,-0.4 13,-0.1 -1,-0.1 -0.809 89.3-106.2-116.6 156.2 6.0 8.4 -2.8 14 14 A D - 0 0 83 -2,-0.3 2,-0.5 12,-0.2 12,-0.2 -0.702 40.3-162.4 -85.4 132.2 7.8 5.7 -4.8 15 15 A Y B -C 25 0B 30 10,-3.0 10,-2.2 -2,-0.4 2,-0.7 -0.960 17.1-160.5-127.5 125.8 8.7 2.8 -2.6 16 16 A Q - 0 0 128 -2,-0.5 8,-0.2 8,-0.2 7,-0.0 -0.926 32.5-120.2-103.4 113.2 11.2 -0.0 -3.1 17 17 A E - 0 0 37 -2,-0.7 7,-0.1 1,-0.2 36,-0.1 -0.277 20.9-165.8 -50.4 124.7 10.5 -3.0 -0.8 18 18 A K S S+ 0 0 155 1,-0.1 -1,-0.2 5,-0.1 6,-0.0 0.552 76.2 31.1 -91.6 -10.0 13.5 -3.6 1.4 19 19 A S S > S- 0 0 38 4,-0.0 3,-2.6 1,-0.0 -1,-0.1 -0.980 87.2-111.4-144.4 152.0 12.2 -7.0 2.4 20 20 A P T 3 S+ 0 0 123 0, 0.0 -3,-0.0 0, 0.0 -1,-0.0 0.635 117.2 64.4 -58.4 -13.9 10.0 -9.7 0.7 21 21 A A T 3 S+ 0 0 57 30,-0.1 31,-2.9 2,-0.1 2,-0.2 0.560 98.2 68.6 -84.8 -10.1 7.3 -8.8 3.2 22 22 A E B < S-d 52 0C 3 -3,-2.6 2,-0.4 29,-0.3 31,-0.2 -0.452 80.2-127.7 -97.7 174.6 7.1 -5.4 1.7 23 23 A V - 0 0 0 29,-1.3 2,-0.6 -2,-0.2 -5,-0.1 -0.961 11.3-124.6-127.7 146.9 5.9 -4.4 -1.8 24 24 A T + 0 0 28 -2,-0.4 2,-0.4 -8,-0.2 -8,-0.2 -0.804 40.2 170.9 -85.3 119.8 7.4 -2.3 -4.6 25 25 A M B -C 15 0B 2 -10,-2.2 -10,-3.0 -2,-0.6 2,-0.5 -0.981 26.5-142.9-133.6 143.3 5.1 0.5 -5.5 26 26 A K > - 0 0 114 -2,-0.4 3,-1.7 -12,-0.2 -15,-0.2 -0.908 32.8-107.7-106.1 133.5 5.4 3.5 -7.8 27 27 A K T 3 S+ 0 0 109 -2,-0.5 -15,-0.2 1,-0.2 3,-0.1 -0.192 103.1 41.4 -57.3 147.7 3.8 6.8 -6.7 28 28 A G T 3 S+ 0 0 56 -17,-2.8 -1,-0.2 1,-0.4 2,-0.1 -0.013 89.2 115.2 100.4 -28.0 0.7 7.8 -8.7 29 29 A D < - 0 0 84 -3,-1.7 -18,-2.3 -18,-0.1 2,-0.6 -0.442 65.9-128.9 -75.9 147.4 -0.6 4.3 -8.7 30 30 A I E -A 10 0A 92 -20,-0.2 2,-0.2 -2,-0.1 -20,-0.2 -0.882 30.5-168.7 -98.2 119.3 -3.8 3.3 -7.0 31 31 A L E -A 9 0A 0 -22,-3.1 -22,-2.6 -2,-0.6 2,-0.5 -0.651 24.4-110.3-105.7 162.3 -3.4 0.4 -4.6 32 32 A T E -E 45 0C 21 13,-1.6 13,-2.0 -2,-0.2 2,-0.7 -0.809 29.1-133.8 -91.8 130.1 -5.9 -1.8 -2.8 33 33 A L E +E 44 0C 0 -27,-2.9 11,-0.2 -2,-0.5 3,-0.2 -0.758 31.1 168.2 -89.1 116.6 -5.8 -1.4 1.0 34 34 A L E S+ 0 0 20 9,-3.2 2,-0.3 -2,-0.7 10,-0.2 0.683 71.3 13.8 -99.5 -26.0 -5.8 -4.7 2.8 35 35 A N E +E 43 0C 33 8,-1.6 8,-1.6 -29,-0.1 -1,-0.3 -0.901 49.1 152.4-155.8 123.0 -5.0 -3.4 6.2 36 36 A S + 0 0 40 -2,-0.3 6,-0.1 6,-0.2 -1,-0.1 0.184 64.1 88.0-128.2 10.9 -5.1 0.1 7.7 37 37 A T + 0 0 136 2,-0.0 2,-0.3 3,-0.0 5,-0.1 0.499 69.7 92.1 -89.2 -5.0 -5.8 -1.0 11.3 38 38 A N S S- 0 0 50 3,-0.1 -3,-0.0 1,-0.1 5,-0.0 -0.733 73.3-142.0 -90.4 140.2 -2.0 -1.4 11.9 39 39 A K S S+ 0 0 183 -2,-0.3 -1,-0.1 1,-0.0 3,-0.1 0.716 91.3 12.3 -73.3 -21.9 -0.3 1.7 13.3 40 40 A D S S+ 0 0 55 1,-0.3 15,-2.0 14,-0.1 2,-0.7 0.743 120.6 43.6-122.1 -67.6 2.9 1.2 11.3 41 41 A W E - F 0 54C 81 13,-0.2 -1,-0.3 14,-0.1 2,-0.2 -0.804 64.4-164.8 -97.1 114.4 2.9 -1.3 8.4 42 42 A W E - F 0 53C 34 11,-2.7 11,-2.4 -2,-0.7 2,-0.5 -0.586 18.1-125.3 -90.1 159.1 -0.2 -1.2 6.2 43 43 A K E +EF 35 52C 59 -8,-1.6 -9,-3.2 9,-0.2 -8,-1.6 -0.917 35.5 167.7-110.2 126.8 -1.0 -4.0 3.8 44 44 A V E -EF 33 51C 0 7,-2.4 7,-1.6 -2,-0.5 2,-0.6 -0.965 29.7-134.7-137.6 153.1 -1.6 -3.2 0.2 45 45 A E E +EF 32 50C 68 -13,-2.0 -13,-1.6 -2,-0.3 2,-0.4 -0.950 29.5 167.2-111.8 121.0 -1.9 -5.1 -3.1 46 46 A V E > - F 0 49C 17 3,-2.1 3,-2.9 -2,-0.6 2,-1.3 -0.987 64.4 -26.6-133.9 141.3 0.1 -3.8 -6.1 47 47 A N T 3 S- 0 0 108 -2,-0.4 3,-0.1 1,-0.3 -2,-0.0 -0.365 127.5 -40.3 54.5 -87.1 0.7 -5.5 -9.4 48 48 A D T 3 S+ 0 0 131 -2,-1.3 2,-0.6 1,-0.1 -1,-0.3 0.234 120.2 95.1-145.3 6.4 0.5 -9.1 -8.0 49 49 A R E < - F 0 46C 90 -3,-2.9 -3,-2.1 -25,-0.1 2,-0.7 -0.906 48.7-172.6-112.8 115.9 2.3 -8.6 -4.7 50 50 A Q E + F 0 45C 71 -2,-0.6 -5,-0.3 -5,-0.3 2,-0.2 -0.900 36.2 111.8-111.9 106.5 0.3 -7.9 -1.6 51 51 A G E - F 0 44C 6 -7,-1.6 -7,-2.4 -2,-0.7 2,-0.3 -0.461 61.9 -43.0-143.9-144.9 2.4 -7.1 1.4 52 52 A F E +dF 22 43C 67 -31,-2.9 -29,-1.3 -9,-0.2 -9,-0.2 -0.725 40.5 173.9-106.9 148.8 3.3 -4.2 3.7 53 53 A V E - F 0 42C 0 -11,-2.4 -11,-2.7 -2,-0.3 2,-0.2 -0.957 43.0 -87.6-139.7 157.9 4.1 -0.6 3.1 54 54 A P E >> - F 0 41C 26 0, 0.0 3,-2.1 0, 0.0 4,-0.7 -0.514 29.7-136.0 -67.7 131.8 4.7 2.4 5.5 55 55 A A T 34 S+ 0 0 26 -15,-2.0 3,-0.4 1,-0.3 -14,-0.1 0.764 103.7 60.6 -58.7 -27.3 1.5 4.2 6.5 56 56 A A T 34 S+ 0 0 73 1,-0.2 -1,-0.3 -16,-0.2 3,-0.0 0.466 99.7 57.0 -81.3 -0.9 3.2 7.5 5.9 57 57 A Y T <4 S+ 0 0 87 -3,-2.1 -45,-2.2 -45,-0.1 -44,-1.2 0.644 100.6 58.6-105.1 -19.8 3.8 6.7 2.2 58 58 A V E < S-B 11 0A 8 -4,-0.7 2,-0.4 -3,-0.4 -47,-0.2 -0.837 70.5-142.6-113.9 151.0 0.2 6.0 1.1 59 59 A K E -B 10 0A 114 -49,-2.7 -49,-2.7 -2,-0.3 2,-0.5 -0.878 23.5-109.2-113.8 144.7 -2.8 8.3 1.2 60 60 A K E +B 9 0A 67 -2,-0.4 -51,-0.2 -51,-0.2 -52,-0.1 -0.583 26.3 179.8 -71.1 118.6 -6.4 7.4 1.9 61 61 A L 0 0 82 -53,-1.9 -1,-0.2 -2,-0.5 -52,-0.1 0.065 360.0 360.0 -95.8 21.3 -8.5 7.7 -1.2 62 62 A D 0 0 137 -54,-0.1 -53,-0.1 0, 0.0 -54,-0.1 0.647 360.0 360.0-125.9 360.0 -11.2 6.6 1.2