==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 20-NOV-06 2JML . COMPND 2 MOLECULE: DNA BINDING DOMAIN/TRANSCRIPTIONAL REGULATOR; . SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS; . AUTHOR M.JIMENEZ,S.PADMANABHAN,C.GONZALEZ,M.C.PEREZ-MARIN,M.ELIAS-A . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6693.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 70.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 14.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 44.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -2 A G 0 0 134 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 108.4 7.0 14.5 3.8 2 -1 A S - 0 0 127 0, 0.0 2,-0.2 0, 0.0 0, 0.0 -0.810 360.0 -69.8 153.1 165.4 5.0 11.4 2.8 3 0 A H - 0 0 110 -2,-0.2 2,-0.2 1,-0.1 0, 0.0 -0.541 51.5 -91.6 -93.2 154.6 2.9 8.6 4.5 4 1 A M - 0 0 136 -2,-0.2 2,-0.4 42,-0.1 43,-0.4 -0.412 37.3-150.0 -58.6 121.5 4.0 5.7 6.7 5 2 A T - 0 0 62 -2,-0.2 41,-0.2 41,-0.1 2,-0.2 -0.849 18.8-179.7 -95.5 132.2 4.8 2.5 4.8 6 3 A L E -A 45 0A 71 39,-2.3 39,-2.4 -2,-0.4 2,-0.2 -0.532 22.9-102.7-121.2-178.6 4.2 -0.9 6.6 7 4 A R E >> -A 44 0A 131 37,-0.2 4,-1.6 -2,-0.2 3,-1.6 -0.673 33.9-101.1-107.9 166.5 4.5 -4.6 5.7 8 5 A I H 3> S+ 0 0 8 35,-0.7 4,-3.3 1,-0.3 5,-0.2 0.814 120.8 68.4 -54.5 -30.0 2.1 -7.5 4.7 9 6 A R H 3> S+ 0 0 185 1,-0.2 4,-1.6 2,-0.2 -1,-0.3 0.871 104.0 42.3 -53.8 -41.7 2.5 -8.6 8.4 10 7 A T H <> S+ 0 0 32 -3,-1.6 4,-0.5 2,-0.2 -2,-0.2 0.867 113.7 50.8 -72.2 -42.4 0.6 -5.4 9.4 11 8 A I H >< S+ 0 0 2 -4,-1.6 3,-0.8 1,-0.2 -2,-0.2 0.917 113.8 45.3 -64.1 -43.0 -2.0 -5.8 6.5 12 9 A A H >X S+ 0 0 1 -4,-3.3 4,-3.2 1,-0.2 3,-2.2 0.888 96.6 75.2 -62.4 -42.2 -2.6 -9.4 7.6 13 10 A R H 3< S+ 0 0 177 -4,-1.6 -1,-0.2 1,-0.3 -2,-0.2 0.669 75.0 82.2 -46.8 -28.0 -2.8 -8.3 11.4 14 11 A M T << S- 0 0 78 -3,-0.8 -1,-0.3 -4,-0.5 -2,-0.1 0.808 129.8 -25.7 -45.8 -42.5 -6.3 -6.9 10.6 15 12 A T T <4 S- 0 0 58 -3,-2.2 2,-2.0 -4,-0.2 -2,-0.2 0.319 74.2-131.4-151.6 -6.4 -7.8 -10.5 11.0 16 13 A G S >< S+ 0 0 40 -4,-3.2 3,-2.7 1,-0.2 4,-0.3 -0.314 94.1 85.2 74.7 -52.5 -4.9 -13.0 10.2 17 14 A I T > S+ 0 0 106 -2,-2.0 3,-0.6 1,-0.3 4,-0.4 0.721 79.5 66.5 -54.7 -26.0 -7.2 -15.0 7.8 18 15 A R T >> S+ 0 0 21 -6,-0.4 4,-3.1 1,-0.2 3,-1.1 0.724 79.8 78.5 -62.7 -29.6 -6.2 -12.6 5.0 19 16 A E H <> S+ 0 0 58 -3,-2.7 4,-2.9 1,-0.3 5,-0.3 0.873 90.4 53.6 -60.0 -36.6 -2.5 -13.7 5.0 20 17 A A H <> S+ 0 0 78 -3,-0.6 4,-0.9 -4,-0.3 -1,-0.3 0.810 116.2 40.5 -58.6 -34.9 -3.5 -16.9 3.0 21 18 A T H <> S+ 0 0 26 -3,-1.1 4,-3.2 -4,-0.4 -2,-0.2 0.874 114.4 51.0 -83.1 -43.7 -5.1 -14.5 0.4 22 19 A L H X S+ 0 0 2 -4,-3.1 4,-1.7 2,-0.2 -2,-0.2 0.928 114.3 44.0 -59.8 -50.3 -2.4 -11.8 0.5 23 20 A R H X S+ 0 0 116 -4,-2.9 4,-0.8 -5,-0.2 -1,-0.2 0.855 114.1 52.2 -65.0 -36.4 0.4 -14.5 -0.1 24 21 A A H >X S+ 0 0 20 -4,-0.9 4,-2.0 -5,-0.3 3,-1.5 0.981 106.9 51.5 -57.7 -58.5 -1.9 -16.0 -2.8 25 22 A W H 3X>S+ 0 0 0 -4,-3.2 5,-3.1 1,-0.3 4,-3.1 0.800 95.6 69.9 -53.2 -35.6 -2.3 -12.6 -4.5 26 23 A E H 3<5S+ 0 0 105 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.877 120.1 19.7 -47.0 -42.4 1.5 -12.1 -4.6 27 24 A R H <<5S+ 0 0 237 -3,-1.5 -2,-0.2 -4,-0.8 -1,-0.2 0.587 125.9 57.4 -99.7 -17.4 1.6 -15.0 -7.2 28 25 A R H <5S- 0 0 140 -4,-2.0 -3,-0.2 3,-0.1 -2,-0.2 0.784 136.8 -26.1 -88.6 -30.7 -2.2 -14.7 -8.3 29 26 A Y T <5S- 0 0 106 -4,-3.1 -3,-0.2 -5,-0.2 -4,-0.1 0.418 78.9-110.4-150.7 -35.9 -2.3 -11.0 -9.4 30 27 A G < + 0 0 20 -5,-3.1 -4,-0.2 1,-0.3 -5,-0.1 0.309 58.1 165.2 103.6 -3.6 0.4 -8.9 -7.6 31 28 A F + 0 0 27 -6,-0.3 -1,-0.3 1,-0.1 -2,-0.1 -0.746 62.5 40.6 -87.7 139.6 -2.0 -6.8 -5.5 32 29 A P S S- 0 0 3 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.603 100.1-138.0 -65.2 142.1 -1.1 -5.2 -3.1 33 30 A R - 0 0 187 -2,-0.1 2,-0.2 1,-0.1 -2,-0.1 -0.571 17.7-118.4 -75.0 119.0 1.9 -4.2 -5.3 34 31 A P - 0 0 61 0, 0.0 11,-0.2 0, 0.0 -1,-0.1 -0.455 30.9-118.9 -66.7 122.9 5.2 -4.3 -3.2 35 32 A L B -B 44 0A 61 9,-2.9 2,-1.8 -2,-0.2 9,-0.5 -0.335 30.1-103.0 -67.0 144.4 6.7 -0.8 -3.1 36 33 A R S S+ 0 0 257 7,-0.1 2,-0.2 -2,-0.0 -1,-0.1 -0.456 84.3 94.9 -77.9 78.7 10.2 -0.6 -4.7 37 34 A S S S- 0 0 97 -2,-1.8 7,-0.0 1,-0.2 2,-0.0 -0.663 77.7 -50.2-145.8-170.4 12.3 -0.4 -1.5 38 35 A E S S+ 0 0 177 -2,-0.2 -1,-0.2 5,-0.1 6,-0.2 -0.163 77.6 90.8 -69.4 175.0 14.3 -2.6 1.0 39 36 A G - 0 0 34 4,-0.1 5,-0.2 2,-0.0 -2,-0.1 0.428 37.4-172.1 96.1 119.1 13.0 -5.8 2.6 40 37 A N S S+ 0 0 162 3,-0.1 -2,-0.0 0, 0.0 0, 0.0 0.822 89.7 29.4-100.1 -68.0 13.5 -9.3 1.1 41 38 A N S S+ 0 0 119 2,-0.0 2,-0.3 0, 0.0 -2,-0.0 0.747 130.6 45.6 -62.7 -25.3 11.3 -11.7 3.3 42 39 A Y S S- 0 0 129 -34,-0.0 2,-0.3 -35,-0.0 -35,-0.0 -0.906 76.2-151.2-120.0 147.5 9.0 -8.7 3.9 43 40 A R - 0 0 31 -2,-0.3 -35,-0.7 -7,-0.0 2,-0.3 -0.846 17.2-118.9-118.2 156.1 7.6 -6.2 1.4 44 41 A V E +AB 7 35A 26 -9,-0.5 -9,-2.9 -2,-0.3 2,-0.3 -0.727 31.8 175.1-101.2 147.1 6.6 -2.5 2.0 45 42 A Y E -A 6 0A 4 -39,-2.4 -39,-2.3 -2,-0.3 2,-0.2 -0.982 19.8-131.0-149.5 151.2 3.1 -1.0 1.4 46 43 A S > - 0 0 17 -2,-0.3 4,-2.2 -41,-0.2 3,-0.4 -0.520 33.5-104.3-101.9 168.3 1.2 2.2 1.8 47 44 A R H > S+ 0 0 160 -43,-0.4 4,-3.0 1,-0.2 5,-0.1 0.822 118.5 64.4 -60.3 -32.0 -2.2 3.1 3.4 48 45 A E H > S+ 0 0 119 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.892 106.0 42.4 -62.5 -40.0 -3.6 3.5 -0.2 49 46 A E H > S+ 0 0 35 -3,-0.4 4,-3.3 2,-0.2 5,-0.2 0.960 114.0 52.6 -64.8 -50.2 -3.0 -0.3 -0.8 50 47 A V H X S+ 0 0 26 -4,-2.2 4,-3.4 2,-0.2 5,-0.3 0.864 104.3 56.8 -54.2 -42.1 -4.3 -1.0 2.8 51 48 A E H X S+ 0 0 110 -4,-3.0 4,-1.6 2,-0.2 -1,-0.2 0.959 116.4 34.7 -51.5 -58.8 -7.6 0.9 2.0 52 49 A A H X S+ 0 0 17 -4,-1.4 4,-3.2 2,-0.2 -2,-0.2 0.955 121.0 48.8 -59.8 -53.8 -8.4 -1.2 -1.0 53 50 A V H X S+ 0 0 0 -4,-3.3 4,-3.2 1,-0.2 5,-0.2 0.894 109.8 50.3 -57.0 -48.9 -6.9 -4.5 0.5 54 51 A R H X S+ 0 0 123 -4,-3.4 4,-1.2 -5,-0.2 -1,-0.2 0.841 115.7 44.9 -61.8 -36.1 -8.8 -4.1 3.9 55 52 A R H >X S+ 0 0 163 -4,-1.6 4,-3.1 -5,-0.3 3,-0.7 0.986 113.5 48.2 -62.6 -63.0 -12.0 -3.6 1.8 56 53 A V H 3X S+ 0 0 4 -4,-3.2 4,-2.5 1,-0.3 -2,-0.2 0.859 111.3 52.4 -46.4 -48.7 -11.2 -6.5 -0.6 57 54 A A H 3X S+ 0 0 5 -4,-3.2 4,-1.0 2,-0.2 -1,-0.3 0.858 113.9 40.9 -56.7 -45.2 -10.5 -8.8 2.4 58 55 A R H X>S+ 0 0 53 -4,-3.1 4,-1.5 1,-0.2 3,-1.2 0.875 103.2 56.8 -56.2 -39.3 -15.6 -8.2 0.7 60 57 A I H 3<5S+ 0 0 35 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.844 97.5 60.3 -62.1 -36.0 -14.1 -11.7 0.5 61 58 A Q H 3<5S+ 0 0 139 -4,-1.0 -1,-0.3 -3,-0.4 -2,-0.2 0.678 105.8 50.4 -64.2 -16.1 -15.9 -12.5 3.8 62 59 A E H <<5S- 0 0 128 -3,-1.2 -2,-0.2 -4,-0.5 -1,-0.2 0.855 143.9 -26.1 -89.0 -38.5 -19.1 -11.7 1.9 63 60 A E T <5 - 0 0 157 -4,-1.5 2,-0.4 0, 0.0 -3,-0.2 0.520 66.0-132.3-146.1 -28.6 -18.4 -14.0 -1.2 64 61 A G S > > + 0 0 90 -2,-0.4 4,-2.5 1,-0.3 3,-1.3 0.833 65.4 82.7 -49.0 -34.2 -15.0 -13.8 -5.6 66 63 A S H 3>>S+ 0 0 7 1,-0.3 4,-1.2 -7,-0.3 5,-0.7 0.636 71.3 78.5 -51.5 -16.2 -13.9 -10.3 -4.5 67 64 A V H <>5S+ 0 0 16 -3,-2.6 4,-0.8 3,-0.2 -1,-0.3 0.986 114.4 16.6 -46.3 -66.1 -10.4 -11.8 -4.7 68 65 A S H <>5S+ 0 0 55 -3,-1.3 4,-2.9 -4,-0.2 -2,-0.2 0.900 131.6 52.5 -79.8 -39.3 -10.5 -11.3 -8.5 69 66 A E H X5S+ 0 0 86 -4,-2.5 4,-3.3 2,-0.2 -3,-0.2 0.961 111.7 39.8 -63.0 -59.6 -13.5 -8.9 -8.6 70 67 A A H X5S+ 0 0 8 -4,-1.2 4,-2.7 2,-0.2 -1,-0.2 0.807 117.8 51.6 -71.0 -24.6 -12.4 -6.2 -6.1 71 68 A I H XX S+ 0 0 72 -4,-3.3 4,-3.0 2,-0.2 3,-0.7 0.980 111.4 43.9 -55.7 -62.1 -12.5 -3.2 -9.8 74 71 A V H 3< S+ 0 0 36 -4,-2.7 -2,-0.2 1,-0.3 -1,-0.2 0.793 111.1 57.2 -62.6 -23.9 -9.6 -1.3 -8.0 75 72 A K H 3< S+ 0 0 155 -4,-2.4 -1,-0.3 1,-0.1 -2,-0.2 0.892 117.8 32.1 -65.3 -42.3 -7.5 -1.8 -11.2 76 73 A T H << S+ 0 0 110 -4,-1.9 -2,-0.2 -3,-0.7 -3,-0.2 0.740 127.4 44.3 -85.2 -22.8 -10.3 -0.1 -13.3 77 74 A E S < S- 0 0 139 -4,-3.0 -1,-0.2 -5,-0.2 -2,-0.1 -0.763 81.8-170.0-122.1 76.6 -11.3 2.3 -10.4 78 75 A P - 0 0 96 0, 0.0 -3,-0.1 0, 0.0 2,-0.1 -0.324 30.5 -94.0 -69.7 155.0 -8.0 3.7 -8.9 79 76 A P - 0 0 77 0, 0.0 2,-0.2 0, 0.0 -31,-0.0 -0.333 39.5-175.1 -72.2 149.6 -8.1 5.6 -5.5 80 77 A R 0 0 227 -2,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.748 360.0 360.0-152.5 97.3 -8.3 9.5 -5.5 81 78 A E 0 0 242 -2,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.795 360.0 360.0 -87.7 360.0 -8.2 11.8 -2.4