==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 15-DEC-06 2JN0 . COMPND 2 MOLECULE: HYPOTHETICAL LIPOPROTEIN YGDR; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR P.ROSSI,C.X.CHEN,M.JIANG,K.CUNNINGHAM,L.MA,R.XIAO,J.C.LIU, . 50 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3912.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 88.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 40.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 32.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A D 0 0 99 0, 0.0 16,-0.9 0, 0.0 47,-0.1 0.000 360.0 360.0 360.0-177.4 5.4 -1.3 10.7 2 5 A Y + 0 0 149 14,-0.2 12,-2.5 45,-0.1 2,-0.4 0.199 360.0 76.0-118.8 12.7 1.7 -0.6 10.8 3 6 A V E -A 13 0A 41 44,-0.2 2,-0.7 10,-0.2 10,-0.2 -0.992 57.4-158.6-130.5 134.5 1.5 2.7 9.0 4 7 A M E -A 12 0A 3 8,-3.1 8,-2.8 -2,-0.4 2,-0.6 -0.900 5.5-162.9-113.0 101.1 1.7 3.4 5.3 5 8 A A E -AB 11 46A 24 41,-2.6 41,-2.1 -2,-0.7 40,-1.9 -0.756 24.1-159.3 -80.3 122.6 2.7 7.0 4.4 6 9 A T E > - B 0 44A 9 4,-2.3 3,-2.2 -2,-0.6 38,-0.2 -0.342 32.3 -85.2-104.0-179.7 1.7 7.4 0.8 7 10 A K T 3 S+ 0 0 119 36,-2.0 37,-0.1 1,-0.3 36,-0.1 0.844 125.8 53.4 -48.9 -43.1 2.5 9.6 -2.2 8 11 A D T 3 S- 0 0 103 35,-0.2 -1,-0.3 2,-0.1 3,-0.1 0.484 117.6-112.5 -78.0 -2.6 -0.0 12.2 -1.1 9 12 A G S < S+ 0 0 60 -3,-2.2 2,-0.2 1,-0.3 -2,-0.1 0.345 72.4 139.5 88.3 -7.3 1.6 12.4 2.3 10 13 A R - 0 0 150 -5,-0.1 -4,-2.3 1,-0.1 2,-0.7 -0.518 51.2-132.8 -74.5 134.5 -1.5 10.9 4.0 11 14 A M E -A 5 0A 121 -2,-0.2 2,-0.5 -6,-0.2 -6,-0.3 -0.802 18.8-157.7 -91.7 114.8 -0.7 8.3 6.7 12 15 A I E -A 4 0A 40 -8,-2.8 -8,-3.1 -2,-0.7 2,-0.8 -0.822 15.6-131.1 -95.9 125.9 -2.8 5.2 6.2 13 16 A L E -A 3 0A 80 -2,-0.5 19,-0.6 -10,-0.2 2,-0.3 -0.670 38.4-177.8 -75.3 111.3 -3.3 3.0 9.3 14 17 A T B -C 31 0B 17 -12,-2.5 17,-0.2 -2,-0.8 3,-0.1 -0.737 47.5-129.3-110.9 156.7 -2.5 -0.5 8.1 15 18 A D - 0 0 85 15,-3.1 16,-0.1 -2,-0.3 2,-0.1 0.694 65.5-149.3 -65.2 -22.4 -2.5 -4.0 9.6 16 19 A G + 0 0 2 14,-0.8 14,-0.3 -14,-0.2 -1,-0.2 -0.361 63.7 99.7 94.0-170.1 0.9 -3.6 8.1 17 20 A K - 0 0 153 -16,-0.9 2,-0.1 1,-0.1 -15,-0.1 0.917 59.0-162.5 65.9 55.0 3.1 -6.3 6.6 18 21 A P - 0 0 47 0, 0.0 2,-0.6 0, 0.0 11,-0.2 -0.419 14.8-141.4 -85.6 149.6 2.4 -5.8 2.9 19 22 A E E -D 28 0C 144 9,-2.7 9,-3.3 -2,-0.1 2,-0.5 -0.933 16.6-155.3-109.4 117.7 3.1 -8.1 0.0 20 23 A I E -D 27 0C 87 -2,-0.6 2,-1.2 7,-0.3 7,-0.2 -0.786 14.0-140.6 -95.7 130.5 4.3 -6.5 -3.2 21 24 A D E >>> -D 26 0C 64 5,-3.4 4,-3.4 -2,-0.5 3,-1.7 -0.784 20.6-171.7 -82.8 96.4 3.8 -8.2 -6.6 22 25 A D T 345S+ 0 0 148 -2,-1.2 -1,-0.1 1,-0.3 5,-0.1 0.440 74.2 74.2 -77.6 2.4 7.2 -7.2 -8.0 23 26 A D T 345S+ 0 0 132 3,-0.1 -1,-0.3 1,-0.0 -2,-0.0 0.593 123.2 4.0 -87.1 -12.9 6.3 -8.5 -11.4 24 27 A T T <45S- 0 0 90 -3,-1.7 -2,-0.2 2,-0.1 17,-0.1 0.505 103.3-106.6-137.7 -35.5 4.1 -5.4 -11.9 25 28 A G T <5 + 0 0 7 -4,-3.4 16,-2.0 1,-0.3 2,-0.5 0.734 63.0 146.8 105.1 32.5 4.5 -3.2 -8.8 26 29 A L E < -DE 21 40C 63 -5,-1.2 -5,-3.4 14,-0.2 2,-0.7 -0.873 36.6-147.1-103.2 132.6 1.3 -3.7 -7.0 27 30 A V E -DE 20 39C 2 12,-2.9 12,-2.4 -2,-0.5 2,-0.9 -0.868 2.4-154.6-107.1 110.9 1.4 -3.6 -3.2 28 31 A S E +DE 19 38C 23 -9,-3.3 -9,-2.7 -2,-0.7 10,-0.3 -0.729 28.5 165.8 -84.5 105.2 -1.0 -5.8 -1.3 29 32 A Y E - E 0 37C 18 8,-2.9 8,-1.7 -2,-0.9 2,-0.5 -0.578 35.1-119.5-110.5 175.6 -1.6 -4.2 2.1 30 33 A H E - E 0 36C 66 -14,-0.3 -15,-3.1 6,-0.2 -14,-0.8 -0.973 25.1-151.0-120.6 117.6 -4.2 -4.7 4.8 31 34 A D B > -C 14 0B 21 4,-2.4 3,-2.2 -2,-0.5 4,-0.3 -0.190 38.1 -90.5 -74.4 175.8 -6.4 -1.7 5.8 32 35 A Q T 3 S+ 0 0 130 -19,-0.6 -18,-0.1 1,-0.3 -1,-0.1 0.800 126.5 59.0 -57.3 -31.7 -7.9 -1.2 9.3 33 36 A Q T 3 S- 0 0 118 2,-0.1 -1,-0.3 1,-0.1 -19,-0.1 0.447 124.4-102.4 -80.6 0.3 -11.0 -3.1 8.3 34 37 A G S < S+ 0 0 57 -3,-2.2 2,-0.5 1,-0.3 -2,-0.2 0.848 70.9 155.2 79.6 35.3 -8.8 -6.2 7.5 35 38 A N - 0 0 71 -4,-0.3 -4,-2.4 2,-0.0 2,-1.0 -0.861 39.4-146.9-103.2 125.7 -9.0 -5.6 3.8 36 39 A A E +E 30 0C 72 -2,-0.5 2,-0.3 -6,-0.2 -6,-0.2 -0.789 36.5 160.3 -90.7 100.2 -6.3 -6.9 1.5 37 40 A M E -E 29 0C 76 -8,-1.7 -8,-2.9 -2,-1.0 2,-0.5 -0.819 34.8-126.8-121.9 160.3 -6.0 -4.3 -1.2 38 41 A Q E +E 28 0C 110 -2,-0.3 -10,-0.3 -10,-0.3 2,-0.2 -0.930 25.5 179.6-114.0 124.6 -3.4 -3.4 -3.8 39 42 A I E -E 27 0C 33 -12,-2.4 -12,-2.9 -2,-0.5 2,-0.3 -0.577 38.4 -81.0-110.0-179.8 -2.0 0.1 -4.3 40 43 A N E >> -E 26 0C 77 -14,-0.2 3,-1.1 -2,-0.2 4,-0.5 -0.629 26.3-135.6 -85.1 137.6 0.7 1.5 -6.6 41 44 A R G >4 S+ 0 0 141 -16,-2.0 3,-0.9 -2,-0.3 -1,-0.1 0.845 109.1 55.6 -57.2 -35.5 4.3 1.0 -5.7 42 45 A D G 34 S+ 0 0 98 1,-0.3 -1,-0.3 -17,-0.2 -17,-0.0 0.715 102.2 57.3 -71.5 -19.3 4.9 4.7 -6.7 43 46 A D G <4 S+ 0 0 35 -3,-1.1 -36,-2.0 -37,-0.1 2,-0.7 0.575 85.7 94.5 -86.1 -11.9 2.2 5.6 -4.2 44 47 A V E << +B 6 0A 30 -3,-0.9 -38,-0.2 -4,-0.5 3,-0.1 -0.743 45.9 156.2 -82.2 116.6 4.2 3.9 -1.5 45 48 A S E + 0 0 51 -40,-1.9 2,-0.5 -2,-0.7 -39,-0.2 0.815 58.4 10.2-105.9 -72.4 6.2 6.6 0.2 46 49 A Q E +B 5 0A 121 -41,-2.1 -41,-2.6 1,-0.1 -1,-0.2 -0.927 58.0 136.6-124.9 110.7 7.3 5.9 3.7 47 50 A I S S- 0 0 32 -2,-0.5 2,-0.3 1,-0.5 -44,-0.2 0.724 76.1 -63.6-105.0 -56.1 6.8 2.5 5.4 48 51 A I S S- 0 0 95 -47,-0.1 2,-0.8 -44,-0.0 -1,-0.5 -0.931 72.8 -50.1-178.3 175.7 10.2 2.2 7.2 49 52 A E 0 0 192 -2,-0.3 -3,-0.0 -3,-0.1 0, 0.0 -0.553 360.0 360.0 -68.3 107.6 13.9 1.9 6.3 50 53 A R 0 0 206 -2,-0.8 -1,-0.1 0, 0.0 0, 0.0 -0.765 360.0 360.0 -94.4 360.0 13.8 -0.9 3.7