==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 30-JUL-01 1JOS . COMPND 2 MOLECULE: RIBOSOME-BINDING FACTOR A; . SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; . AUTHOR N.BONANDER,M.TORDOVA,A.J.HOWARD,E.EISENSTEIN,G.L.GILLILAND, . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7104.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 73 73.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 7 7.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 9.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 39 39.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 7 A R >> 0 0 251 0, 0.0 4,-1.2 0, 0.0 3,-0.6 0.000 360.0 360.0 360.0 4.2 58.2 27.7 9.8 2 8 A S H 3> + 0 0 25 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.719 360.0 69.6 -68.9 -19.0 55.4 25.4 10.9 3 9 A D H 3> S+ 0 0 130 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.885 97.6 47.9 -66.1 -39.7 55.8 26.8 14.4 4 10 A R H <> S+ 0 0 163 -3,-0.6 4,-2.3 2,-0.2 -1,-0.2 0.901 115.7 44.5 -68.8 -42.3 54.4 30.2 13.4 5 11 A V H X S+ 0 0 19 -4,-1.2 4,-3.0 2,-0.2 5,-0.3 0.944 114.6 48.3 -68.1 -45.0 51.5 28.7 11.6 6 12 A A H X S+ 0 0 12 -4,-2.9 4,-2.1 1,-0.2 -2,-0.2 0.940 113.6 47.8 -59.6 -46.9 50.8 26.2 14.4 7 13 A Q H X S+ 0 0 104 -4,-2.6 4,-1.9 -5,-0.2 -1,-0.2 0.918 114.1 47.0 -60.9 -42.7 51.0 29.1 17.0 8 14 A E H X S+ 0 0 54 -4,-2.3 4,-2.7 1,-0.2 5,-0.2 0.906 112.3 49.3 -66.5 -39.4 48.7 31.3 14.9 9 15 A I H X S+ 0 0 0 -4,-3.0 4,-3.2 2,-0.2 5,-0.4 0.859 108.2 53.6 -69.4 -32.8 46.2 28.5 14.3 10 16 A Q H X S+ 0 0 61 -4,-2.1 4,-1.4 -5,-0.3 -1,-0.2 0.956 111.6 46.3 -67.1 -42.9 46.1 27.7 18.0 11 17 A K H X S+ 0 0 114 -4,-1.9 4,-1.2 -5,-0.2 -2,-0.2 0.953 121.2 36.3 -60.4 -52.6 45.3 31.3 18.8 12 18 A E H X S+ 0 0 58 -4,-2.7 4,-1.7 1,-0.2 -2,-0.2 0.837 113.6 52.7 -75.2 -37.2 42.6 31.7 16.1 13 19 A I H X S+ 0 0 0 -4,-3.2 4,-2.7 -5,-0.2 5,-0.2 0.822 103.7 61.0 -71.5 -24.4 41.0 28.3 16.2 14 20 A A H X S+ 0 0 32 -4,-1.4 4,-1.9 -5,-0.4 -1,-0.2 0.949 106.6 45.5 -60.7 -50.7 40.6 28.7 20.0 15 21 A V H X S+ 0 0 77 -4,-1.2 4,-1.5 2,-0.2 -1,-0.2 0.890 114.0 48.2 -59.0 -45.0 38.4 31.8 19.4 16 22 A I H X S+ 0 0 6 -4,-1.7 4,-3.4 1,-0.2 5,-0.4 0.897 111.6 49.7 -64.9 -44.5 36.4 30.1 16.6 17 23 A L H X S+ 0 0 0 -4,-2.7 4,-1.3 1,-0.2 12,-0.3 0.846 109.9 50.3 -67.6 -33.6 35.8 27.0 18.7 18 24 A Q H < S+ 0 0 108 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.824 120.6 35.5 -72.4 -32.0 34.6 28.9 21.7 19 25 A R H < S+ 0 0 122 -4,-1.5 -2,-0.2 -5,-0.2 -3,-0.2 0.876 123.4 37.9 -88.9 -41.3 32.2 30.9 19.6 20 26 A E H < S+ 0 0 73 -4,-3.4 2,-0.8 -5,-0.2 -3,-0.2 0.807 96.7 76.6 -86.8 -30.0 30.9 28.4 17.0 21 27 A V < + 0 0 33 -4,-1.3 2,-0.5 -5,-0.4 8,-0.2 -0.748 51.4 168.9 -89.9 112.3 30.6 25.2 18.9 22 28 A K + 0 0 160 -2,-0.8 6,-0.1 6,-0.1 -4,-0.0 -0.880 16.3 138.2-124.7 98.0 27.5 25.1 21.0 23 29 A D >> - 0 0 39 -2,-0.5 4,-2.7 4,-0.2 3,-1.5 -0.943 37.9-155.8-140.0 111.9 26.7 21.6 22.4 24 30 A P T 34 S+ 0 0 117 0, 0.0 4,-0.1 0, 0.0 -1,-0.1 0.709 91.1 63.7 -61.6 -23.5 25.6 21.4 26.0 25 31 A R T 34 S+ 0 0 150 1,-0.1 29,-0.2 2,-0.1 32,-0.1 0.656 118.5 23.5 -77.1 -14.8 26.7 17.8 26.3 26 32 A I T <4 S- 0 0 2 -3,-1.5 25,-2.1 1,-0.1 24,-0.5 0.613 91.5-166.1-118.6 -21.5 30.3 18.8 25.8 27 33 A G < + 0 0 18 -4,-2.7 -4,-0.2 23,-0.2 -2,-0.1 -0.300 54.2 11.5 69.1-157.7 30.4 22.4 26.8 28 34 A M - 0 0 77 21,-0.1 22,-1.9 1,-0.1 2,-0.6 -0.264 69.0-140.2 -58.4 134.7 33.4 24.6 25.9 29 35 A V E -A 49 0A 3 -12,-0.3 2,-0.3 -8,-0.2 20,-0.2 -0.875 21.6-163.1 -98.5 119.7 35.8 23.1 23.5 30 36 A T E -A 48 0A 55 18,-3.2 18,-2.3 -2,-0.6 2,-0.6 -0.822 13.7-136.0-104.7 144.1 39.3 24.0 24.5 31 37 A V E +A 47 0A 18 -2,-0.3 16,-0.3 16,-0.2 3,-0.1 -0.888 20.6 178.6-103.0 118.2 42.4 23.8 22.3 32 38 A S E - 0 0 45 14,-2.3 2,-0.3 -2,-0.6 15,-0.2 0.759 63.0 -23.3 -89.1 -26.1 45.3 22.2 24.0 33 39 A D E -A 46 0A 71 13,-1.2 13,-2.3 2,-0.0 2,-0.3 -0.964 49.6-142.0-173.9 165.6 47.8 22.3 21.2 34 40 A V E -A 45 0A 7 -2,-0.3 2,-0.4 11,-0.2 11,-0.2 -0.990 10.6-167.7-142.6 132.9 48.3 22.4 17.5 35 41 A E E -A 44 0A 93 9,-2.0 9,-2.6 -2,-0.3 2,-0.4 -0.957 6.1-166.2-119.8 141.3 50.9 20.6 15.4 36 42 A V E -A 43 0A 18 -2,-0.4 7,-0.2 7,-0.2 -34,-0.1 -0.995 23.8-114.3-131.0 139.0 51.5 21.5 11.8 37 43 A S > - 0 0 38 5,-2.2 3,-2.2 -2,-0.4 -31,-0.1 -0.222 31.4-107.2 -67.5 156.9 53.4 19.5 9.2 38 44 A S T 3 S+ 0 0 114 1,-0.3 -1,-0.1 2,-0.1 -36,-0.0 0.835 121.7 54.3 -54.8 -35.6 56.8 20.8 7.8 39 45 A D T 3 S- 0 0 102 1,-0.1 -1,-0.3 -38,-0.0 -2,-0.1 0.279 109.2-126.1 -83.0 11.3 55.1 21.4 4.4 40 46 A L S < S+ 0 0 59 -3,-2.2 -2,-0.1 2,-0.1 -1,-0.1 0.639 81.0 114.1 53.8 18.2 52.4 23.6 6.2 41 47 A S + 0 0 31 45,-0.1 46,-2.7 1,-0.1 2,-0.4 0.736 67.7 37.9 -89.7 -26.4 49.8 21.3 4.6 42 48 A Y E - b 0 87A 128 44,-0.3 -5,-2.2 -5,-0.0 2,-0.4 -0.967 59.1-167.2-131.6 145.4 48.3 19.5 7.5 43 49 A A E -Ab 36 88A 0 44,-2.0 46,-2.0 -2,-0.4 2,-0.5 -0.996 10.0-152.5-134.0 141.8 47.3 20.5 11.0 44 50 A K E -Ab 35 89A 59 -9,-2.6 -9,-2.0 -2,-0.4 2,-0.6 -0.947 11.8-157.9-109.7 125.6 46.4 18.4 14.1 45 51 A I E -Ab 34 90A 0 44,-3.3 46,-2.7 -2,-0.5 2,-0.5 -0.919 3.9-156.9-109.6 109.6 44.1 20.2 16.5 46 52 A F E +Ab 33 91A 35 -13,-2.3 -14,-2.3 -2,-0.6 -13,-1.2 -0.750 24.0 176.1 -86.7 126.0 44.3 18.6 20.1 47 53 A V E -Ab 31 92A 0 44,-2.4 46,-2.4 -2,-0.5 2,-0.3 -0.881 24.4-161.3-131.7 157.6 41.2 19.4 22.0 48 54 A T E -A 30 0A 37 -18,-2.3 -18,-3.2 -2,-0.3 2,-0.4 -0.970 16.4-138.9-131.1 152.9 39.4 18.8 25.3 49 55 A F E -A 29 0A 5 -2,-0.3 -20,-0.2 -20,-0.2 -22,-0.2 -0.894 17.9-128.0-109.5 144.1 35.7 19.2 26.2 50 56 A L S S+ 0 0 109 -22,-1.9 2,-0.7 -24,-0.5 -23,-0.2 0.902 104.8 48.1 -56.5 -43.6 34.5 20.7 29.5 51 57 A F + 0 0 91 -25,-2.1 -1,-0.2 -23,-0.1 3,-0.1 -0.894 65.1 156.2-102.4 112.9 32.2 17.7 30.0 52 58 A D + 0 0 102 -2,-0.7 -1,-0.1 1,-0.1 -26,-0.1 0.049 44.8 90.7-125.1 26.3 34.2 14.5 29.4 53 59 A H S S+ 0 0 153 1,-0.1 2,-0.7 2,-0.0 -1,-0.1 0.684 72.4 70.2 -96.1 -23.5 32.4 11.8 31.4 54 60 A D > - 0 0 56 -29,-0.2 4,-2.2 1,-0.2 3,-0.2 -0.888 63.1-164.2-100.9 109.6 30.0 10.5 28.7 55 61 A E H > S+ 0 0 145 -2,-0.7 4,-1.9 1,-0.2 -1,-0.2 0.802 89.9 52.3 -63.6 -33.7 32.0 8.6 26.0 56 62 A M H > S+ 0 0 143 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.857 109.0 50.9 -72.2 -31.6 29.1 8.7 23.5 57 63 A A H > S+ 0 0 4 -3,-0.2 4,-2.6 2,-0.2 -2,-0.2 0.905 107.9 52.3 -71.7 -40.7 28.8 12.5 23.9 58 64 A I H X S+ 0 0 32 -4,-2.2 4,-2.8 2,-0.2 5,-0.2 0.941 109.8 49.2 -60.5 -45.8 32.5 12.9 23.4 59 65 A E H X S+ 0 0 76 -4,-1.9 4,-2.4 1,-0.2 -2,-0.2 0.938 111.2 48.7 -59.1 -45.8 32.3 10.9 20.1 60 66 A Q H X S+ 0 0 106 -4,-2.1 4,-2.3 1,-0.2 -1,-0.2 0.900 110.7 51.6 -61.7 -39.3 29.3 13.0 18.9 61 67 A G H X S+ 0 0 4 -4,-2.6 4,-2.1 1,-0.2 -1,-0.2 0.950 109.9 48.4 -65.0 -44.0 31.2 16.1 19.7 62 68 A M H X S+ 0 0 19 -4,-2.8 4,-1.9 1,-0.2 -2,-0.2 0.842 112.0 49.9 -64.3 -33.3 34.3 14.8 17.7 63 69 A K H X S+ 0 0 116 -4,-2.4 4,-2.6 -5,-0.2 -1,-0.2 0.871 109.0 51.9 -69.7 -36.3 31.9 13.9 14.8 64 70 A G H X S+ 0 0 38 -4,-2.3 4,-2.1 2,-0.2 -2,-0.2 0.886 108.7 52.0 -66.2 -38.6 30.4 17.4 14.9 65 71 A L H < S+ 0 0 3 -4,-2.1 4,-0.2 2,-0.2 -2,-0.2 0.886 112.0 44.8 -65.3 -41.5 33.9 18.9 14.8 66 72 A E H >< S+ 0 0 109 -4,-1.9 3,-1.2 2,-0.2 -2,-0.2 0.894 111.8 51.2 -69.0 -40.5 34.7 16.9 11.7 67 73 A K H 3< S+ 0 0 184 -4,-2.6 4,-0.2 1,-0.2 -2,-0.2 0.897 113.9 46.6 -61.1 -37.1 31.5 17.7 10.0 68 74 A A T 3X S+ 0 0 35 -4,-2.1 4,-2.5 1,-0.2 -1,-0.2 0.376 84.1 101.3 -82.4 2.4 32.2 21.4 10.7 69 75 A S H <> S+ 0 0 16 -3,-1.2 4,-2.5 -4,-0.2 5,-0.2 0.898 76.4 52.2 -61.5 -45.8 35.8 21.2 9.5 70 76 A P H > S+ 0 0 89 0, 0.0 4,-2.2 0, 0.0 -1,-0.2 0.943 114.5 45.0 -55.7 -48.5 35.3 22.9 6.0 71 77 A Y H > S+ 0 0 121 -4,-0.2 4,-1.9 1,-0.2 -2,-0.2 0.907 112.3 50.8 -60.8 -44.2 33.5 25.8 7.7 72 78 A I H X S+ 0 0 4 -4,-2.5 4,-2.3 2,-0.2 -1,-0.2 0.878 109.2 51.3 -62.0 -37.4 36.1 26.1 10.4 73 79 A R H X S+ 0 0 66 -4,-2.5 4,-2.8 1,-0.2 -2,-0.2 0.906 107.7 53.6 -65.8 -39.1 38.9 26.1 7.7 74 80 A S H X S+ 0 0 65 -4,-2.2 4,-2.0 -5,-0.2 -2,-0.2 0.883 109.7 47.1 -63.0 -37.6 37.0 28.9 6.0 75 81 A L H X S+ 0 0 22 -4,-1.9 4,-2.9 2,-0.2 -1,-0.2 0.897 111.7 50.3 -71.3 -41.5 37.0 31.0 9.2 76 82 A L H X S+ 0 0 0 -4,-2.3 4,-3.5 2,-0.2 5,-0.4 0.935 108.9 53.1 -58.7 -47.3 40.7 30.3 9.8 77 83 A G H X S+ 0 0 14 -4,-2.8 4,-1.9 1,-0.2 5,-0.5 0.914 112.0 44.3 -54.0 -46.5 41.4 31.4 6.3 78 84 A K H < S+ 0 0 166 -4,-2.0 -1,-0.2 2,-0.2 -2,-0.2 0.921 117.6 45.2 -65.2 -43.3 39.5 34.7 6.9 79 85 A A H < S+ 0 0 43 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.880 124.6 31.3 -68.2 -39.6 41.2 35.2 10.3 80 86 A M H < S- 0 0 32 -4,-3.5 -1,-0.2 -5,-0.2 -2,-0.2 0.603 91.0-140.0 -96.1 -16.1 44.7 34.4 9.2 81 87 A R < + 0 0 227 -4,-1.9 2,-0.3 -5,-0.4 -3,-0.1 0.905 41.2 165.7 54.0 44.0 44.6 35.6 5.6 82 88 A L - 0 0 61 -5,-0.5 3,-0.2 -6,-0.2 -1,-0.2 -0.637 40.6-143.4 -86.7 148.5 46.7 32.5 4.5 83 89 A R S S+ 0 0 233 1,-0.3 2,-0.6 -2,-0.3 -1,-0.1 0.890 96.2 32.3 -77.4 -42.3 46.8 31.7 0.8 84 90 A I S S- 0 0 93 -3,-0.1 -1,-0.3 -7,-0.0 0, 0.0 -0.950 77.2-157.2-120.3 112.0 46.8 28.0 1.6 85 91 A V - 0 0 23 -2,-0.6 3,-0.1 -3,-0.2 -12,-0.1 -0.762 27.3-117.3 -85.4 124.0 44.8 26.9 4.7 86 92 A P - 0 0 2 0, 0.0 -44,-0.3 0, 0.0 -45,-0.1 -0.179 27.6-104.1 -56.5 154.9 46.1 23.5 6.1 87 93 A E E -b 42 0A 101 -46,-2.7 -44,-2.0 1,-0.0 2,-0.4 -0.388 45.0-139.7 -68.9 152.2 43.8 20.5 6.2 88 94 A I E -b 43 0A 21 -46,-0.2 2,-0.4 -3,-0.1 -44,-0.2 -0.977 23.3-177.4-126.0 142.3 42.6 20.0 9.7 89 95 A R E -b 44 0A 138 -46,-2.0 -44,-3.3 -2,-0.4 2,-0.5 -0.974 19.4-139.1-128.0 143.5 42.1 17.0 12.0 90 96 A F E -b 45 0A 20 -2,-0.4 2,-0.4 -46,-0.2 -44,-0.2 -0.900 18.1-175.6-107.0 136.8 40.8 17.0 15.5 91 97 A I E -b 46 0A 45 -46,-2.7 -44,-2.4 -2,-0.5 2,-0.6 -0.989 26.6-126.2-129.4 126.0 42.2 14.7 18.2 92 98 A Y E -b 47 0A 42 -2,-0.4 2,-0.8 -46,-0.2 -44,-0.2 -0.609 25.6-137.5 -75.1 120.4 40.9 14.4 21.7 93 99 A D - 0 0 32 -46,-2.4 -1,-0.1 -2,-0.6 -47,-0.0 -0.650 22.7-179.0 -79.4 104.2 43.8 15.1 24.1 94 100 A Q + 0 0 182 -2,-0.8 -1,-0.1 -46,-0.1 3,-0.1 0.232 32.8 140.9 -92.6 23.3 43.7 12.5 27.0 95 101 A S - 0 0 76 1,-0.1 2,-0.1 0, 0.0 -2,-0.0 -0.157 64.8 -84.6 -59.8 152.0 46.9 14.0 28.7 96 102 A L - 0 0 160 1,-0.0 2,-0.4 2,-0.0 -1,-0.1 -0.408 49.4-173.0 -67.8 132.5 46.8 14.2 32.5 97 103 A V + 0 0 113 1,-0.1 3,-0.1 -2,-0.1 -1,-0.0 -0.992 18.8 173.9-129.9 133.8 45.1 17.3 33.9 98 104 A E + 0 0 156 -2,-0.4 2,-2.0 1,-0.1 -1,-0.1 0.812 8.7 165.2-100.0 -69.1 45.0 18.5 37.5 99 105 A G 0 0 81 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.612 360.0 360.0 85.1 -79.7 43.3 21.9 37.5 100 106 A M 0 0 212 -2,-2.0 -3,-0.0 -3,-0.1 0, 0.0 -0.968 360.0 360.0-140.6 360.0 42.8 21.7 41.2