==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 23-MAY-07 2JPS . COMPND 2 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR R.GRANT,N.J.MARSHALL,J.YANG,M.FASKEN,S.KELLY,M.T.HARREMAN, . 105 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7502.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 74 70.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 65 61.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 191 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-179.8 -6.9 11.7 -15.8 2 2 A S + 0 0 110 1,-0.0 2,-0.2 0, 0.0 3,-0.1 0.725 360.0 3.9-117.9 -57.4 -5.4 8.4 -17.1 3 3 A Q S > S+ 0 0 87 1,-0.1 4,-0.5 2,-0.1 37,-0.1 -0.606 75.2 130.4-133.9 77.2 -5.7 5.7 -14.4 4 4 A E H > + 0 0 95 -2,-0.2 4,-3.5 2,-0.2 5,-0.3 0.850 69.1 61.0 -95.8 -40.3 -7.6 6.9 -11.3 5 5 A Q H > S+ 0 0 126 1,-0.2 4,-1.8 2,-0.2 5,-0.2 0.909 110.8 44.0 -54.7 -37.4 -10.2 4.0 -10.8 6 6 A Y H > S+ 0 0 67 2,-0.2 4,-3.4 1,-0.2 5,-0.3 0.888 113.6 51.0 -74.5 -35.6 -7.1 1.7 -10.3 7 7 A T H X S+ 0 0 39 -4,-0.5 4,-2.9 2,-0.2 -2,-0.2 0.923 110.9 47.8 -67.8 -41.0 -5.4 4.2 -8.0 8 8 A E H X S+ 0 0 128 -4,-3.5 4,-1.0 2,-0.2 -2,-0.2 0.928 120.4 37.6 -67.4 -39.9 -8.6 4.6 -5.9 9 9 A N H X S+ 0 0 60 -4,-1.8 4,-1.7 -5,-0.3 3,-0.3 0.919 120.0 47.1 -77.3 -40.2 -9.0 0.8 -5.6 10 10 A L H X S+ 0 0 5 -4,-3.4 4,-3.1 -5,-0.2 5,-0.3 0.898 104.9 61.4 -67.6 -35.8 -5.2 0.2 -5.4 11 11 A K H X S+ 0 0 74 -4,-2.9 4,-2.0 -5,-0.3 -1,-0.2 0.887 104.4 49.6 -58.9 -34.7 -4.9 3.0 -2.7 12 12 A V H X S+ 0 0 33 -4,-1.0 4,-1.8 -3,-0.3 -1,-0.2 0.963 113.7 43.4 -69.9 -48.3 -7.3 0.9 -0.4 13 13 A I H X S+ 0 0 7 -4,-1.7 4,-0.9 1,-0.2 -2,-0.2 0.909 113.3 53.1 -64.2 -37.5 -5.3 -2.3 -0.8 14 14 A V H >X S+ 0 0 0 -4,-3.1 4,-2.0 1,-0.2 3,-0.7 0.932 108.0 50.5 -64.3 -41.1 -2.0 -0.4 -0.4 15 15 A A H 3X>S+ 0 0 24 -4,-2.0 4,-3.5 -5,-0.3 5,-0.5 0.869 96.9 70.1 -65.2 -32.7 -3.3 1.1 2.9 16 16 A E H 3X5S+ 0 0 61 -4,-1.8 4,-0.6 1,-0.2 -1,-0.2 0.882 108.9 35.1 -53.3 -36.0 -4.3 -2.4 4.1 17 17 A K H < S- 0 0 18 -4,-2.3 3,-1.1 1,-0.2 -4,-0.0 -0.273 72.4-140.5 -52.6 131.8 2.5 -2.5 9.8 22 22 A P T 3 S+ 0 0 108 0, 0.0 -1,-0.2 0, 0.0 3,-0.0 0.745 99.8 51.6 -69.1 -22.5 3.1 -2.0 13.5 23 23 A N T 3 S+ 0 0 132 1,-0.1 2,-0.3 2,-0.1 -2,-0.1 -0.010 91.2 85.9-103.4 32.4 5.7 0.8 12.8 24 24 A F < + 0 0 27 -3,-1.1 -1,-0.1 -5,-0.1 3,-0.1 -0.669 39.0 129.5-131.1 80.7 3.4 2.9 10.5 25 25 A N + 0 0 123 -2,-0.3 3,-0.3 1,-0.1 2,-0.2 0.834 68.6 40.9-100.1 -41.4 1.2 5.3 12.6 26 26 A E S S+ 0 0 160 1,-0.2 -1,-0.1 2,-0.1 0, 0.0 -0.697 114.2 21.3-105.5 161.0 1.7 8.7 10.8 27 27 A D S S+ 0 0 89 -2,-0.2 -1,-0.2 1,-0.1 4,-0.2 0.918 82.7 128.3 53.4 44.4 2.0 9.4 7.0 28 28 A I S > S+ 0 0 22 -3,-0.3 4,-1.0 2,-0.1 -9,-0.1 0.834 70.6 39.6 -99.2 -39.5 0.1 6.1 6.2 29 29 A K H > S+ 0 0 122 2,-0.2 4,-1.1 1,-0.2 3,-0.2 0.905 119.0 47.7 -77.2 -37.8 -2.7 7.3 3.8 30 30 A Y H > S+ 0 0 156 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.844 107.3 57.2 -71.5 -29.6 -0.3 9.8 2.0 31 31 A V H > S+ 0 0 2 1,-0.2 4,-1.8 -4,-0.2 -1,-0.2 0.837 101.0 57.0 -71.9 -27.1 2.4 7.1 1.6 32 32 A A H X S+ 0 0 0 -4,-1.0 4,-3.0 2,-0.2 5,-0.3 0.898 100.3 58.1 -70.4 -35.9 -0.1 4.7 -0.2 33 33 A E H X S+ 0 0 99 -4,-1.1 4,-2.7 1,-0.2 -1,-0.2 0.954 108.2 45.2 -59.4 -46.2 -0.7 7.4 -2.9 34 34 A Y H X S+ 0 0 43 -4,-1.2 4,-2.5 2,-0.2 5,-0.2 0.926 111.6 53.6 -63.9 -39.5 3.0 7.6 -3.8 35 35 A I H X S+ 0 0 3 -4,-1.8 4,-2.5 1,-0.2 -2,-0.2 0.963 111.4 44.6 -60.4 -47.6 3.1 3.8 -3.8 36 36 A V H X S+ 0 0 0 -4,-3.0 4,-3.9 2,-0.2 5,-0.3 0.930 109.2 57.4 -63.1 -40.4 0.2 3.6 -6.3 37 37 A L H X S+ 0 0 106 -4,-2.7 4,-2.1 -5,-0.3 -1,-0.2 0.942 109.3 45.1 -56.3 -43.1 1.8 6.4 -8.4 38 38 A L H X>S+ 0 0 4 -4,-2.5 4,-1.3 2,-0.2 5,-0.8 0.934 114.2 49.5 -66.1 -41.3 4.9 4.2 -8.7 39 39 A I H <5S+ 0 0 4 -4,-2.5 3,-0.5 -5,-0.2 -2,-0.2 0.947 110.5 49.5 -63.0 -45.6 2.7 1.2 -9.5 40 40 A V H <5S+ 0 0 67 -4,-3.9 -1,-0.2 1,-0.2 -2,-0.2 0.905 103.7 61.3 -61.5 -37.8 0.8 3.2 -12.2 41 41 A N H <5S- 0 0 126 -4,-2.1 -1,-0.2 -5,-0.3 -2,-0.2 0.894 140.3 -58.6 -57.3 -37.6 4.1 4.3 -13.7 42 42 A G T <5 - 0 0 61 -4,-1.3 -3,-0.2 -3,-0.5 -2,-0.1 0.148 62.0-107.9-172.8 -52.6 5.0 0.6 -14.5 43 43 A G < + 0 0 19 -5,-0.8 2,-0.7 1,-0.2 -4,-0.1 0.816 52.5 156.8 106.3 53.2 5.0 -1.7 -11.4 44 44 A T > - 0 0 74 -6,-0.3 4,-4.1 1,-0.2 5,-0.4 -0.892 30.9-157.6-112.7 104.9 8.7 -2.6 -10.8 45 45 A V H > S+ 0 0 46 -2,-0.7 4,-2.7 1,-0.2 5,-0.3 0.868 94.7 52.5 -49.9 -36.3 9.3 -3.7 -7.2 46 46 A E H > S+ 0 0 140 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.987 118.0 34.0 -66.6 -54.5 13.0 -2.7 -7.6 47 47 A S H > S+ 0 0 54 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.886 121.5 50.8 -68.2 -34.1 12.4 0.8 -8.9 48 48 A V H X S+ 0 0 1 -4,-4.1 4,-1.9 2,-0.2 -2,-0.2 0.897 113.7 43.8 -71.6 -35.9 9.2 1.1 -6.6 49 49 A V H X S+ 0 0 18 -4,-2.7 4,-2.7 -5,-0.4 5,-0.2 0.908 114.9 49.0 -75.5 -37.8 11.2 -0.0 -3.5 50 50 A D H X S+ 0 0 88 -4,-2.5 4,-2.0 -5,-0.3 -2,-0.2 0.897 113.2 47.4 -68.2 -36.2 14.2 2.3 -4.3 51 51 A E H X S+ 0 0 83 -4,-2.1 4,-1.2 -5,-0.2 5,-0.2 0.931 116.4 43.0 -71.6 -41.2 11.9 5.3 -4.9 52 52 A L H X S+ 0 0 3 -4,-1.9 4,-3.9 -5,-0.2 3,-0.2 0.911 114.1 51.4 -70.8 -38.1 9.9 4.7 -1.6 53 53 A A H < S+ 0 0 5 -4,-2.7 -2,-0.2 1,-0.2 -1,-0.2 0.915 103.3 59.3 -65.2 -38.7 13.2 4.0 0.3 54 54 A S H < S+ 0 0 85 -4,-2.0 3,-0.3 -5,-0.2 -1,-0.2 0.890 121.3 26.3 -58.1 -35.8 14.7 7.3 -1.0 55 55 A L H < S+ 0 0 116 -4,-1.2 2,-0.7 1,-0.2 -2,-0.2 0.861 132.6 37.5 -94.4 -41.7 11.8 9.2 0.6 56 56 A F < + 0 0 42 -4,-3.9 -1,-0.2 -5,-0.2 3,-0.2 -0.626 67.9 141.8-109.0 75.0 10.9 6.7 3.5 57 57 A D + 0 0 104 -2,-0.7 -1,-0.1 -3,-0.3 -4,-0.1 0.048 51.3 83.8-101.6 28.8 14.4 5.3 4.5 58 58 A S S S+ 0 0 115 2,-0.1 2,-0.2 -3,-0.0 -1,-0.1 0.835 82.4 57.8 -97.0 -38.7 13.6 5.2 8.3 59 59 A V S S- 0 0 30 -3,-0.2 5,-0.1 1,-0.1 -35,-0.0 -0.568 106.3 -80.3 -89.8 156.1 11.8 1.8 8.5 60 60 A S >> - 0 0 83 -2,-0.2 3,-1.3 1,-0.1 4,-1.2 -0.193 40.1-118.5 -52.0 142.0 13.5 -1.5 7.3 61 61 A R H 3> S+ 0 0 150 1,-0.3 4,-2.9 2,-0.2 5,-0.3 0.867 113.1 66.1 -52.9 -35.0 13.4 -1.9 3.5 62 62 A D H 3> S+ 0 0 121 1,-0.2 4,-2.2 2,-0.2 -1,-0.3 0.899 97.3 54.2 -56.7 -37.8 11.4 -5.2 4.1 63 63 A T H <> S+ 0 0 29 -3,-1.3 4,-1.4 2,-0.2 -1,-0.2 0.943 111.3 44.0 -63.7 -43.8 8.5 -3.0 5.5 64 64 A L H X S+ 0 0 9 -4,-1.2 4,-2.1 1,-0.2 3,-0.3 0.956 113.3 50.8 -66.7 -45.9 8.4 -0.8 2.3 65 65 A A H X S+ 0 0 29 -4,-2.9 4,-2.8 1,-0.2 -1,-0.2 0.881 103.9 60.8 -59.5 -34.7 8.7 -3.9 0.0 66 66 A N H X S+ 0 0 76 -4,-2.2 4,-1.7 -5,-0.3 -1,-0.2 0.935 107.3 43.6 -60.6 -43.1 5.8 -5.5 1.9 67 67 A V H X S+ 0 0 0 -4,-1.4 4,-1.6 -3,-0.3 -1,-0.2 0.918 114.4 49.8 -70.3 -38.2 3.4 -2.7 0.9 68 68 A V H X S+ 0 0 0 -4,-2.1 4,-2.0 1,-0.2 -2,-0.2 0.898 107.2 56.3 -66.8 -35.3 4.7 -2.7 -2.7 69 69 A Q H X S+ 0 0 99 -4,-2.8 4,-2.1 -5,-0.2 5,-0.2 0.945 107.0 47.7 -62.6 -44.8 4.2 -6.5 -2.9 70 70 A T H X S+ 0 0 26 -4,-1.7 4,-2.3 1,-0.2 -1,-0.2 0.862 109.5 54.3 -66.5 -30.0 0.5 -6.2 -1.9 71 71 A A H X S+ 0 0 0 -4,-1.6 4,-2.0 2,-0.2 -1,-0.2 0.901 107.0 51.2 -70.7 -35.7 0.0 -3.4 -4.6 72 72 A F H X S+ 0 0 49 -4,-2.0 4,-1.3 2,-0.2 -2,-0.2 0.975 113.7 43.0 -65.1 -50.2 1.5 -5.7 -7.3 73 73 A F H X S+ 0 0 138 -4,-2.1 4,-2.4 1,-0.2 3,-0.3 0.921 111.0 56.9 -61.8 -39.8 -0.9 -8.5 -6.4 74 74 A A H X S+ 0 0 5 -4,-2.3 4,-3.6 -5,-0.2 5,-0.3 0.908 100.1 58.6 -59.4 -38.7 -3.8 -6.0 -6.1 75 75 A L H X S+ 0 0 46 -4,-2.0 4,-2.0 1,-0.2 -1,-0.2 0.925 109.6 43.5 -58.6 -40.7 -3.1 -4.8 -9.7 76 76 A E H X S+ 0 0 137 -4,-1.3 4,-1.3 -3,-0.3 -1,-0.2 0.924 116.5 46.6 -71.5 -40.6 -3.8 -8.4 -11.0 77 77 A A H X S+ 0 0 34 -4,-2.4 4,-2.5 1,-0.2 -2,-0.2 0.904 112.7 50.2 -68.6 -37.1 -6.8 -8.9 -8.7 78 78 A L H < S+ 0 0 20 -4,-3.6 4,-0.2 -5,-0.2 -1,-0.2 0.917 105.7 56.3 -68.1 -38.9 -8.2 -5.4 -9.7 79 79 A Q H < S+ 0 0 131 -4,-2.0 -1,-0.2 -5,-0.3 -2,-0.2 0.860 114.1 40.2 -61.7 -31.7 -7.8 -6.3 -13.5 80 80 A Q H < S- 0 0 186 -4,-1.3 -2,-0.2 -5,-0.1 -1,-0.2 0.890 132.6 -79.8 -84.8 -39.8 -10.0 -9.4 -13.0 81 81 A G < + 0 0 68 -4,-2.5 2,-0.3 -5,-0.2 -3,-0.2 0.366 65.2 157.4 138.4 79.8 -12.6 -7.8 -10.6 82 82 A E - 0 0 83 -4,-0.2 2,-0.4 -8,-0.1 -73,-0.0 -0.807 34.4-122.6-122.4 165.9 -11.9 -7.4 -6.9 83 83 A S - 0 0 64 -2,-0.3 4,-0.3 1,-0.1 -5,-0.0 -0.897 17.1-175.6-111.4 137.8 -13.3 -5.1 -4.2 84 84 A A S >> S+ 0 0 5 -2,-0.4 4,-1.3 2,-0.1 3,-0.6 0.790 78.3 66.3 -99.3 -33.1 -11.1 -2.6 -2.1 85 85 A E H 3> S+ 0 0 117 1,-0.2 4,-1.3 2,-0.2 3,-0.3 0.903 95.5 60.3 -56.8 -38.6 -13.8 -1.2 0.4 86 86 A N H 3> S+ 0 0 105 1,-0.2 4,-1.1 2,-0.2 3,-0.3 0.903 100.1 55.3 -58.0 -37.9 -14.1 -4.7 2.0 87 87 A I H <> S+ 0 0 25 -3,-0.6 4,-1.8 -4,-0.3 3,-0.4 0.902 100.3 59.8 -63.8 -36.6 -10.4 -4.6 2.9 88 88 A V H X S+ 0 0 38 -4,-1.3 4,-3.3 -3,-0.3 5,-0.3 0.907 96.6 61.2 -59.4 -37.8 -10.9 -1.2 4.8 89 89 A S H X S+ 0 0 63 -4,-1.3 4,-1.7 -3,-0.3 -1,-0.2 0.931 106.3 46.0 -56.1 -41.7 -13.5 -3.0 7.1 90 90 A K H X S+ 0 0 125 -4,-1.1 4,-2.2 -3,-0.4 -1,-0.2 0.891 113.7 49.0 -69.4 -35.0 -10.7 -5.3 8.3 91 91 A I H X S+ 0 0 23 -4,-1.8 4,-3.7 2,-0.2 5,-0.3 0.917 107.8 54.0 -71.3 -39.0 -8.3 -2.3 8.7 92 92 A R H X S+ 0 0 169 -4,-3.3 4,-1.9 2,-0.2 -1,-0.2 0.915 112.6 44.0 -62.1 -38.4 -10.9 -0.3 10.7 93 93 A M H X S+ 0 0 140 -4,-1.7 4,-1.6 -5,-0.3 -1,-0.2 0.926 118.2 43.6 -73.0 -40.6 -11.3 -3.2 13.2 94 94 A M H X S+ 0 0 112 -4,-2.2 4,-1.5 2,-0.2 -2,-0.2 0.909 114.7 49.9 -70.9 -38.0 -7.5 -3.8 13.4 95 95 A N H X S+ 0 0 70 -4,-3.7 4,-1.3 -5,-0.2 -2,-0.2 0.903 108.2 53.7 -67.7 -37.0 -6.8 -0.0 13.7 96 96 A A H < S+ 0 0 61 -4,-1.9 3,-0.3 -5,-0.3 -1,-0.2 0.919 104.8 54.6 -64.5 -39.6 -9.4 0.3 16.5 97 97 A Q H >< S+ 0 0 144 -4,-1.6 3,-1.6 1,-0.2 -1,-0.2 0.923 102.3 57.4 -61.0 -40.8 -7.7 -2.5 18.5 98 98 A S H 3< S+ 0 0 74 -4,-1.5 -1,-0.2 1,-0.3 -2,-0.2 0.899 122.4 26.4 -58.0 -37.4 -4.4 -0.6 18.4 99 99 A L T 3< S+ 0 0 134 -4,-1.3 2,-0.5 -3,-0.3 -1,-0.3 -0.115 94.3 106.8-116.3 37.6 -6.1 2.5 20.0 100 100 A G < + 0 0 35 -3,-1.6 3,-0.4 -5,-0.0 2,-0.2 -0.549 43.2 143.3-113.3 68.4 -8.9 0.7 21.9 101 101 A Q + 0 0 149 -2,-0.5 -2,-0.0 1,-0.2 -3,-0.0 -0.628 58.7 24.9-102.6 164.8 -7.7 0.9 25.6 102 102 A S S S+ 0 0 131 -2,-0.2 -1,-0.2 1,-0.1 0, 0.0 0.890 91.5 111.5 53.0 38.6 -9.9 1.4 28.7 103 103 A D + 0 0 134 -3,-0.4 2,-0.3 0, 0.0 -1,-0.1 -0.132 51.6 86.1-133.6 40.7 -12.9 -0.1 26.8 104 104 A I 0 0 159 1,-0.1 -3,-0.0 0, 0.0 0, 0.0 -0.838 360.0 360.0-133.5 172.5 -13.5 -3.5 28.5 105 105 A A 0 0 169 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 0.489 360.0 360.0-136.5 360.0 -15.5 -4.8 31.6