==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 30-MAY-07 2JQ9 . COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATING PROTEIN 4A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.D.STUCHELL-BRERETON,J.J.SKALICKY,C.KIEFFER,S.GHAFFARIAN, . 84 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6331.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 83.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 65 77.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 5 A T > 0 0 100 0, 0.0 4,-2.1 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -31.2 -9.1 -6.7 7.7 2 6 A L H > + 0 0 108 2,-0.2 4,-2.1 1,-0.2 5,-0.2 0.955 360.0 43.1 -60.1 -53.1 -7.9 -9.6 5.6 3 7 A Q H > S+ 0 0 132 1,-0.2 4,-3.7 2,-0.2 5,-0.3 0.907 114.1 51.6 -60.0 -43.8 -10.6 -9.1 3.0 4 8 A K H > S+ 0 0 123 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.847 109.0 51.8 -62.4 -34.7 -10.2 -5.4 3.0 5 9 A A H X S+ 0 0 0 -4,-2.1 4,-1.6 2,-0.2 -1,-0.2 0.899 118.2 35.8 -69.1 -41.9 -6.4 -5.8 2.5 6 10 A I H X S+ 0 0 77 -4,-2.1 4,-2.8 2,-0.2 -2,-0.2 0.915 116.7 51.8 -77.5 -46.0 -6.8 -8.1 -0.5 7 11 A D H X S+ 0 0 88 -4,-3.7 4,-1.4 -5,-0.2 -3,-0.2 0.834 111.3 50.8 -59.8 -33.1 -9.9 -6.3 -1.9 8 12 A L H X S+ 0 0 27 -4,-1.5 4,-1.5 -5,-0.3 3,-0.3 0.963 113.4 41.2 -69.7 -53.8 -8.0 -3.0 -1.7 9 13 A V H X S+ 0 0 8 -4,-1.6 4,-2.2 1,-0.2 -2,-0.2 0.849 110.6 60.1 -62.9 -35.0 -4.8 -4.2 -3.5 10 14 A T H X S+ 0 0 72 -4,-2.8 4,-1.7 1,-0.2 -1,-0.2 0.894 105.9 46.6 -60.2 -41.4 -7.0 -6.1 -6.0 11 15 A K H X S+ 0 0 80 -4,-1.4 4,-1.6 -3,-0.3 -1,-0.2 0.821 110.1 54.6 -70.5 -31.6 -8.6 -2.9 -7.1 12 16 A A H X S+ 0 0 0 -4,-1.5 4,-2.3 15,-0.2 -2,-0.2 0.892 105.8 51.6 -68.9 -40.9 -5.3 -1.1 -7.3 13 17 A T H X S+ 0 0 41 -4,-2.2 4,-1.3 1,-0.2 -2,-0.2 0.941 110.4 47.4 -61.4 -49.6 -3.9 -3.8 -9.6 14 18 A E H X S+ 0 0 100 -4,-1.7 4,-1.1 1,-0.2 -1,-0.2 0.872 111.0 53.5 -60.1 -38.3 -6.8 -3.5 -12.1 15 19 A E H ><>S+ 0 0 18 -4,-1.6 5,-2.9 1,-0.2 3,-0.9 0.937 104.4 53.1 -62.6 -48.6 -6.5 0.3 -12.0 16 20 A D H ><5S+ 0 0 35 -4,-2.3 3,-0.8 1,-0.3 -1,-0.2 0.808 108.5 52.5 -57.2 -30.1 -2.8 0.3 -12.9 17 21 A K H 3<5S+ 0 0 157 -4,-1.3 -1,-0.3 1,-0.2 -2,-0.2 0.760 105.6 53.9 -77.3 -26.4 -3.8 -1.9 -15.9 18 22 A A T <<5S- 0 0 58 -4,-1.1 -1,-0.2 -3,-0.9 -2,-0.2 -0.000 124.7-100.3 -97.1 28.8 -6.4 0.7 -17.0 19 23 A K T < 5S+ 0 0 166 -3,-0.8 2,-0.7 1,-0.2 -3,-0.2 0.814 82.7 138.0 58.1 30.9 -3.9 3.5 -17.0 20 24 A N >< + 0 0 45 -5,-2.9 4,-1.5 1,-0.2 -1,-0.2 -0.714 12.8 155.6-110.1 80.7 -5.3 4.6 -13.6 21 25 A Y H > S+ 0 0 55 -2,-0.7 4,-1.9 2,-0.2 -1,-0.2 0.872 75.2 51.9 -71.2 -38.2 -2.2 5.5 -11.5 22 26 A E H > S+ 0 0 135 2,-0.2 4,-2.1 -3,-0.2 3,-0.4 0.982 115.8 37.4 -62.0 -60.2 -4.3 7.7 -9.2 23 27 A E H > S+ 0 0 72 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.814 117.2 54.7 -62.3 -30.7 -7.0 5.2 -8.4 24 28 A A H X S+ 0 0 0 -4,-1.5 4,-1.3 2,-0.2 -1,-0.2 0.811 107.6 49.8 -72.8 -30.9 -4.3 2.5 -8.3 25 29 A L H X S+ 0 0 10 -4,-1.9 4,-2.9 -3,-0.4 5,-0.3 0.937 109.3 48.8 -73.0 -49.0 -2.3 4.5 -5.8 26 30 A R H X S+ 0 0 122 -4,-2.1 4,-1.2 1,-0.2 -2,-0.2 0.862 115.2 46.3 -59.1 -36.8 -5.1 5.1 -3.3 27 31 A L H X S+ 0 0 14 -4,-1.4 4,-1.5 -5,-0.2 -1,-0.2 0.814 113.5 49.8 -75.4 -31.5 -6.1 1.5 -3.5 28 32 A Y H X S+ 0 0 1 -4,-1.3 4,-2.8 2,-0.2 5,-0.4 0.965 112.0 44.2 -71.2 -54.8 -2.4 0.4 -3.1 29 33 A Q H X S+ 0 0 26 -4,-2.9 4,-1.6 1,-0.2 -1,-0.2 0.822 115.4 51.5 -59.7 -31.8 -1.6 2.5 -0.0 30 34 A H H X S+ 0 0 84 -4,-1.2 4,-1.3 -5,-0.3 -1,-0.2 0.851 112.8 44.6 -73.9 -35.8 -5.0 1.5 1.5 31 35 A A H X S+ 0 0 0 -4,-1.5 4,-2.0 2,-0.2 -2,-0.2 0.965 117.3 41.6 -72.5 -55.1 -4.2 -2.2 0.9 32 36 A V H X S+ 0 0 0 -4,-2.8 4,-2.5 1,-0.2 5,-0.2 0.894 113.6 54.7 -59.7 -41.7 -0.6 -2.3 2.2 33 37 A E H X S+ 0 0 35 -4,-1.6 4,-1.5 -5,-0.4 -1,-0.2 0.883 111.1 44.8 -60.0 -39.9 -1.6 0.0 5.1 34 38 A Y H X S+ 0 0 70 -4,-1.3 4,-1.2 2,-0.2 -1,-0.2 0.816 110.8 55.1 -74.0 -31.5 -4.3 -2.4 6.1 35 39 A F H X S+ 0 0 32 -4,-2.0 4,-1.5 2,-0.2 3,-0.2 0.935 107.7 47.5 -66.9 -47.9 -2.0 -5.4 5.7 36 40 A L H X S+ 0 0 7 -4,-2.5 4,-2.2 1,-0.2 3,-0.3 0.915 109.7 53.3 -59.9 -44.9 0.7 -4.0 8.0 37 41 A H H X S+ 0 0 76 -4,-1.5 4,-1.3 1,-0.2 -1,-0.2 0.821 107.0 53.7 -60.4 -31.5 -1.9 -3.1 10.7 38 42 A A H X S+ 0 0 21 -4,-1.2 4,-3.1 -3,-0.2 -1,-0.2 0.841 107.8 49.9 -72.2 -34.3 -3.1 -6.7 10.5 39 43 A I H < S+ 0 0 11 -4,-1.5 -2,-0.2 -3,-0.3 -1,-0.2 0.942 109.7 48.5 -69.5 -49.4 0.4 -8.1 11.1 40 44 A K H < S+ 0 0 130 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.829 119.9 40.8 -60.2 -32.5 1.1 -5.9 14.1 41 45 A Y H < S+ 0 0 170 -4,-1.3 2,-0.3 1,-0.3 -2,-0.2 0.944 132.4 1.9 -80.5 -54.0 -2.2 -7.0 15.6 42 46 A E < + 0 0 158 -4,-3.1 -1,-0.3 -5,-0.2 2,-0.3 -0.978 68.3 156.8-137.9 150.0 -2.2 -10.6 14.6 43 47 A A - 0 0 53 -2,-0.3 3,-0.1 -3,-0.1 -4,-0.0 -0.967 35.5-137.9-160.7 171.5 0.2 -13.0 12.9 44 48 A H - 0 0 166 1,-0.4 2,-0.3 -2,-0.3 -1,-0.1 0.831 68.6 -57.3-103.2 -54.2 1.2 -16.6 12.5 45 49 A S > - 0 0 76 1,-0.1 4,-2.9 0, 0.0 -1,-0.4 -0.964 58.9 -70.9-173.5-176.0 5.0 -16.6 12.6 46 50 A D H > S+ 0 0 114 -2,-0.3 4,-1.7 2,-0.2 5,-0.1 0.884 126.7 52.7 -61.2 -39.9 8.2 -15.3 11.0 47 51 A K H > S+ 0 0 166 2,-0.2 4,-1.7 1,-0.2 3,-0.3 0.976 115.3 37.5 -60.2 -59.2 7.6 -17.4 7.9 48 52 A A H > S+ 0 0 28 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.907 115.5 54.6 -60.1 -43.7 4.1 -16.2 7.2 49 53 A K H X S+ 0 0 56 -4,-2.9 4,-1.7 1,-0.2 -1,-0.2 0.822 105.8 54.9 -60.2 -31.4 5.0 -12.7 8.4 50 54 A E H X S+ 0 0 119 -4,-1.7 4,-2.9 -3,-0.3 5,-0.3 0.930 105.7 49.5 -68.1 -46.8 7.8 -12.7 5.8 51 55 A S H X S+ 0 0 69 -4,-1.7 4,-1.4 1,-0.2 -2,-0.2 0.869 114.6 45.9 -60.5 -38.3 5.5 -13.6 2.9 52 56 A I H X S+ 0 0 57 -4,-1.9 4,-1.2 2,-0.2 -1,-0.2 0.811 113.1 50.6 -74.5 -31.4 3.2 -10.8 3.9 53 57 A R H X S+ 0 0 79 -4,-1.7 4,-3.3 -5,-0.2 5,-0.2 0.937 109.3 48.5 -71.6 -48.7 6.1 -8.3 4.4 54 58 A A H X S+ 0 0 60 -4,-2.9 4,-1.7 1,-0.2 -2,-0.2 0.882 112.4 49.7 -59.1 -39.9 7.7 -9.0 1.0 55 59 A K H X S+ 0 0 139 -4,-1.4 4,-1.2 -5,-0.3 -1,-0.2 0.819 114.7 45.1 -69.0 -31.3 4.3 -8.6 -0.7 56 60 A C H X S+ 0 0 1 -4,-1.2 4,-2.3 2,-0.2 -2,-0.2 0.904 109.7 52.9 -78.3 -44.6 3.8 -5.3 1.2 57 61 A V H X S+ 0 0 51 -4,-3.3 4,-1.5 1,-0.2 -2,-0.2 0.871 112.4 46.5 -58.7 -38.4 7.2 -3.9 0.6 58 62 A Q H X S+ 0 0 141 -4,-1.7 4,-1.5 -5,-0.2 -1,-0.2 0.872 111.2 51.1 -72.0 -38.3 6.8 -4.5 -3.2 59 63 A Y H X S+ 0 0 66 -4,-1.2 4,-1.3 1,-0.2 -2,-0.2 0.845 107.6 54.0 -67.5 -34.3 3.4 -2.9 -3.2 60 64 A L H X S+ 0 0 3 -4,-2.3 4,-1.8 2,-0.2 -1,-0.2 0.899 104.9 53.4 -66.9 -41.7 4.6 0.2 -1.4 61 65 A D H X S+ 0 0 73 -4,-1.5 4,-1.4 1,-0.2 -1,-0.2 0.899 107.1 51.6 -60.3 -42.2 7.4 0.7 -4.0 62 66 A R H X S+ 0 0 101 -4,-1.5 4,-1.3 1,-0.2 -1,-0.2 0.830 105.6 57.9 -64.4 -32.5 4.8 0.6 -6.8 63 67 A A H >X S+ 0 0 1 -4,-1.3 4,-2.5 1,-0.2 3,-0.9 0.966 105.3 46.5 -62.4 -55.2 2.7 3.2 -5.0 64 68 A E H 3X S+ 0 0 83 -4,-1.8 4,-1.5 1,-0.3 -1,-0.2 0.810 110.3 56.5 -57.7 -30.3 5.5 5.9 -4.8 65 69 A K H 3X S+ 0 0 160 -4,-1.4 4,-1.1 -5,-0.2 -1,-0.3 0.809 109.4 45.4 -71.7 -30.4 6.1 5.2 -8.5 66 70 A L H 0 0 62 0, 0.0 4,-1.9 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -31.5 8.5 -3.8 8.5 74 116 B D H > + 0 0 115 2,-0.2 4,-2.1 3,-0.2 5,-0.2 0.810 360.0 61.9 -70.4 -30.3 9.2 -0.4 9.9 75 117 B Q H > S+ 0 0 149 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.979 115.7 28.0 -59.3 -60.4 10.9 0.6 6.6 76 118 B L H > S+ 0 0 4 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.800 117.8 61.7 -72.2 -29.5 7.8 0.2 4.5 77 119 B S H X S+ 0 0 39 -4,-1.9 4,-1.4 2,-0.2 -1,-0.2 0.851 108.7 42.4 -64.9 -35.1 5.5 1.0 7.4 78 120 B R H X S+ 0 0 180 -4,-2.1 4,-1.4 2,-0.2 -2,-0.2 0.938 114.9 47.1 -76.6 -50.4 7.1 4.5 7.8 79 121 B R H X S+ 0 0 115 -4,-1.9 4,-1.3 -5,-0.2 -2,-0.2 0.825 111.9 54.0 -60.7 -31.9 7.2 5.3 4.1 80 122 B L H X S+ 0 0 6 -4,-2.1 4,-1.7 2,-0.2 3,-0.3 0.919 103.8 53.1 -69.0 -45.1 3.6 4.1 3.8 81 123 B A H X S+ 0 0 38 -4,-1.4 4,-1.7 1,-0.2 -1,-0.2 0.817 108.6 52.2 -59.9 -31.2 2.4 6.4 6.6 82 124 B A H < S+ 0 0 65 -4,-1.4 -1,-0.2 2,-0.2 -2,-0.2 0.832 103.5 57.9 -74.3 -33.6 3.9 9.3 4.7 83 125 B L H < S+ 0 0 24 -4,-1.3 -2,-0.2 -3,-0.3 -1,-0.2 0.963 110.7 40.3 -60.8 -54.7 2.2 8.5 1.5 84 126 B R H < 0 0 140 -4,-1.7 -2,-0.2 1,-0.2 -1,-0.2 0.926 360.0 360.0 -60.8 -46.7 -1.3 8.7 3.0 85 127 B N < 0 0 181 -4,-1.7 -1,-0.2 -5,-0.2 -4,-0.0 -0.712 360.0 360.0 -84.8 360.0 -0.4 11.8 5.0