==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-JUN-07 2JR6 . COMPND 2 MOLECULE: UPF0434 PROTEIN NMA0874; . SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; . AUTHOR A.GHOSH,K.K.SINGARAPU,Y.WU,G.LIU,D.SUKUMARAN,C.X.CHEN,C.NWOS . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5923.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 34 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 25.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 203 0, 0.0 2,-2.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 7.9 7.7 15.7 -12.5 2 2 A E + 0 0 150 2,-0.1 2,-0.3 3,-0.1 4,-0.1 -0.428 360.0 108.1 -80.1 71.1 6.4 12.1 -12.9 3 3 A K + 0 0 136 -2,-2.4 5,-0.1 2,-0.1 0, 0.0 -0.960 67.7 33.9-137.9 158.2 4.4 11.9 -9.7 4 4 A K S S+ 0 0 159 -2,-0.3 4,-0.1 3,-0.3 -2,-0.1 0.600 107.3 81.3 64.4 13.9 0.7 11.9 -9.2 5 5 A F S S- 0 0 148 0, 0.0 3,-0.1 0, 0.0 -2,-0.1 0.742 118.8 -1.6-102.3 -71.4 0.7 10.1 -12.5 6 6 A L S S+ 0 0 111 1,-0.2 2,-1.1 -4,-0.1 3,-0.3 0.525 127.7 79.9 -88.6 -9.9 1.5 6.5 -11.5 7 7 A D + 0 0 41 1,-0.2 -3,-0.3 12,-0.0 -1,-0.2 -0.537 61.4 95.3 -99.2 61.7 1.7 7.9 -8.0 8 8 A I + 0 0 104 -2,-1.1 2,-0.5 -3,-0.1 -1,-0.2 -0.014 46.4 148.1-135.7 27.7 -2.1 8.0 -7.3 9 9 A L + 0 0 54 -3,-0.3 9,-1.2 9,-0.2 2,-0.3 -0.551 17.9 161.9 -74.8 120.6 -2.5 4.7 -5.6 10 10 A V B -A 17 0A 73 -2,-0.5 7,-0.2 7,-0.2 -2,-0.1 -0.911 43.3 -89.3-135.1 161.0 -5.2 4.8 -3.0 11 11 A C - 0 0 1 5,-1.5 4,-0.2 -2,-0.3 7,-0.0 -0.397 30.8-129.8 -68.4 147.3 -7.4 2.3 -1.1 12 12 A P S S+ 0 0 64 0, 0.0 -1,-0.1 0, 0.0 33,-0.0 0.763 102.7 23.5 -70.1 -24.7 -10.7 1.3 -2.7 13 13 A V S S+ 0 0 121 3,-0.0 19,-0.0 0, 0.0 -2,-0.0 0.844 135.0 27.9-105.0 -65.7 -12.6 2.0 0.4 14 14 A T S S- 0 0 69 1,-0.1 3,-0.1 2,-0.0 18,-0.0 0.758 86.7-150.2 -73.1 -24.8 -10.9 4.5 2.7 15 15 A K + 0 0 149 1,-0.2 2,-0.1 -4,-0.2 3,-0.1 0.748 42.3 148.8 59.6 27.4 -9.2 6.0 -0.4 16 16 A G - 0 0 21 1,-0.2 -5,-1.5 -6,-0.0 -1,-0.2 -0.348 53.6 -75.1 -83.3 171.8 -6.2 7.0 1.7 17 17 A R B -A 10 0A 125 -7,-0.2 2,-0.4 -3,-0.1 14,-0.2 -0.268 44.1-160.4 -71.0 153.0 -2.6 7.2 0.4 18 18 A L - 0 0 11 -9,-1.2 2,-0.4 11,-0.1 -9,-0.2 -0.992 9.1-164.2-134.4 139.1 -0.5 4.1 -0.2 19 19 A E E -B 28 0B 40 9,-0.7 9,-1.1 -2,-0.4 2,-0.2 -0.993 17.4-146.7-124.7 125.7 3.2 3.6 -0.6 20 20 A Y E -B 27 0B 102 -2,-0.4 2,-0.4 7,-0.2 7,-0.2 -0.559 6.1-158.3 -90.7 151.3 4.5 0.4 -2.2 21 21 A H E >> -B 26 0B 44 5,-1.5 5,-1.2 -2,-0.2 4,-0.7 -0.999 17.7-129.5-129.4 135.5 7.7 -1.5 -1.3 22 22 A Q T 45S+ 0 0 102 -2,-0.4 2,-2.5 3,-0.2 4,-0.3 0.224 81.3 55.5 -68.4-167.8 9.4 -3.9 -3.7 23 23 A D T 45S+ 0 0 147 1,-0.3 -1,-0.2 2,-0.1 0, 0.0 -0.334 128.5 25.6 74.9 -56.4 10.5 -7.5 -3.1 24 24 A K T 45S- 0 0 142 -2,-2.5 14,-0.4 -3,-0.3 -1,-0.3 0.552 99.3-137.1-106.8 -12.8 7.0 -8.4 -2.0 25 25 A Q T <5 + 0 0 66 -4,-0.7 13,-1.7 1,-0.2 2,-0.3 0.900 45.3 164.7 54.6 46.5 5.3 -5.7 -4.0 26 26 A E E < -BC 21 37B 18 -5,-1.2 -5,-1.5 -4,-0.3 2,-0.5 -0.739 35.5-144.6 -99.7 141.0 3.0 -5.0 -1.0 27 27 A L E -BC 20 36B 6 9,-3.1 9,-1.9 -2,-0.3 2,-0.5 -0.909 18.8-152.1-100.0 124.3 0.8 -1.9 -0.5 28 28 A W E +BC 19 35B 42 -9,-1.1 -9,-0.7 -2,-0.5 2,-0.4 -0.840 15.8 178.2-104.0 131.5 0.6 -0.9 3.2 29 29 A S E >> + C 0 34B 0 5,-2.1 5,-0.9 -2,-0.5 4,-0.7 -0.974 19.3 177.9-134.3 119.9 -2.4 0.9 4.6 30 30 A R T 45S+ 0 0 164 -2,-0.4 -1,-0.1 2,-0.2 28,-0.0 0.767 87.2 64.3 -84.8 -27.3 -2.8 2.0 8.3 31 31 A Q T 45S+ 0 0 78 -14,-0.2 -1,-0.2 1,-0.2 -2,-0.0 0.661 119.3 24.3 -68.8 -18.3 -6.1 3.6 7.4 32 32 A A T 45S- 0 0 28 2,-0.2 -1,-0.2 -3,-0.1 -2,-0.2 0.468 98.8-131.9-120.7 -11.5 -7.5 0.1 6.5 33 33 A K T <5S+ 0 0 125 -4,-0.7 20,-2.2 1,-0.3 2,-0.2 0.761 73.0 106.9 61.4 28.3 -5.1 -1.9 8.7 34 34 A L E < -CD 29 52B 55 -5,-0.9 -5,-2.1 18,-0.3 2,-0.4 -0.755 61.5-139.5-129.0 173.9 -4.5 -4.1 5.6 35 35 A A E -CD 28 51B 2 16,-3.0 16,-1.9 -2,-0.2 -7,-0.2 -0.998 15.1-151.3-138.3 131.5 -1.9 -4.8 2.9 36 36 A Y E -C 27 0B 12 -9,-1.9 -9,-3.1 -2,-0.4 2,-0.3 -0.834 13.2-129.5-107.1 142.5 -2.6 -5.3 -0.7 37 37 A P E -C 26 0B 15 0, 0.0 7,-3.1 0, 0.0 2,-0.5 -0.678 13.6-149.1 -89.1 140.7 -0.6 -7.5 -3.2 38 38 A I E -E 43 0C 32 -13,-1.7 2,-0.9 -14,-0.4 -2,-0.0 -0.944 2.5-160.0-109.6 123.9 0.6 -6.2 -6.5 39 39 A K E > S-E 42 0C 136 3,-2.1 3,-1.0 -2,-0.5 -14,-0.1 -0.772 74.4 -54.2-104.0 84.4 1.0 -8.6 -9.4 40 40 A D T 3 S- 0 0 166 -2,-0.9 -1,-0.1 1,-0.3 -15,-0.0 0.707 126.0 -26.8 60.0 24.3 3.4 -6.8 -11.8 41 41 A G T 3 S+ 0 0 52 1,-0.1 -1,-0.3 0, 0.0 -3,-0.0 0.372 115.5 111.1 118.0 -1.9 1.0 -3.8 -11.8 42 42 A I E < -E 39 0C 95 -3,-1.0 -3,-2.1 2,-0.0 2,-0.3 -0.843 56.6-153.9-105.6 90.6 -2.2 -5.6 -11.0 43 43 A P E -E 38 0C 45 0, 0.0 2,-0.9 0, 0.0 -5,-0.2 -0.503 1.7-152.2 -64.7 127.9 -3.2 -4.6 -7.4 44 44 A Y + 0 0 72 -7,-3.1 -6,-0.0 -2,-0.3 -2,-0.0 -0.707 27.4 163.1-105.7 80.7 -5.4 -7.2 -5.8 45 45 A M + 0 0 71 -2,-0.9 2,-0.2 -9,-0.2 -1,-0.1 -0.059 35.0 135.9 -83.1 34.3 -7.6 -5.3 -3.3 46 46 A L >> - 0 0 85 1,-0.1 4,-2.7 -2,-0.0 3,-0.5 -0.589 66.7-119.9 -90.8 147.6 -9.8 -8.4 -3.2 47 47 A E T 34 S+ 0 0 177 1,-0.3 -1,-0.1 -2,-0.2 -3,-0.0 0.849 111.9 46.3 -51.5 -43.2 -11.2 -9.8 0.1 48 48 A N T 34 S+ 0 0 156 1,-0.2 -1,-0.3 3,-0.0 -3,-0.0 0.823 120.8 36.1 -73.2 -32.1 -9.5 -13.1 -0.4 49 49 A E T <4 S+ 0 0 70 -3,-0.5 2,-0.5 2,-0.1 -2,-0.2 0.632 94.6 94.4-101.7 -17.0 -6.1 -11.8 -1.3 50 50 A A < - 0 0 20 -4,-2.7 -14,-0.2 -14,-0.1 -5,-0.1 -0.665 60.5-162.4 -79.8 126.5 -6.0 -8.8 0.9 51 51 A R E -D 35 0B 106 -16,-1.9 -16,-3.0 -2,-0.5 2,-0.1 -0.815 15.7-115.6-112.6 148.2 -4.2 -9.5 4.2 52 52 A P E -D 34 0B 95 0, 0.0 -18,-0.3 0, 0.0 2,-0.3 -0.383 27.7-122.1 -76.0 159.8 -4.3 -7.6 7.5 53 53 A L - 0 0 19 -20,-2.2 2,-0.1 -24,-0.2 -18,-0.0 -0.693 21.0-118.4 -99.8 155.3 -1.2 -6.0 9.0 54 54 A S > - 0 0 52 -2,-0.3 4,-3.2 1,-0.1 5,-0.2 -0.454 30.1-105.6 -85.9 166.3 0.2 -6.6 12.4 55 55 A E H > S+ 0 0 149 1,-0.2 4,-3.1 2,-0.2 5,-0.2 0.883 121.7 55.0 -59.0 -43.1 0.5 -4.0 15.1 56 56 A E H > S+ 0 0 143 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.949 111.9 42.9 -51.0 -55.2 4.3 -3.8 14.5 57 57 A E H 4 S+ 0 0 52 2,-0.2 3,-0.3 1,-0.2 -2,-0.2 0.920 114.0 51.2 -59.2 -49.3 3.7 -3.0 10.8 58 58 A L H >< S+ 0 0 24 -4,-3.2 3,-1.3 1,-0.2 -1,-0.2 0.896 110.7 49.1 -51.7 -46.0 0.8 -0.7 11.7 59 59 A K H >< S+ 0 0 151 -4,-3.1 3,-0.8 1,-0.3 -1,-0.2 0.761 102.1 63.0 -68.6 -25.1 3.1 1.1 14.2 60 60 A A T 3< S+ 0 0 40 -4,-1.5 3,-0.3 -3,-0.3 -1,-0.3 0.259 86.6 76.4 -84.8 14.7 5.8 1.3 11.5 61 61 A L T < + 0 0 34 -3,-1.3 -1,-0.3 1,-0.2 -2,-0.1 0.061 58.3 103.9-111.1 21.1 3.4 3.5 9.5 62 62 A E S < S+ 0 0 174 -3,-0.8 2,-0.3 1,-0.1 -1,-0.2 0.721 96.4 3.5 -70.3 -23.0 4.1 6.5 11.6 63 63 A H S S- 0 0 120 -3,-0.3 2,-0.1 0, 0.0 -1,-0.1 -0.914 104.1 -58.7-151.9 173.6 6.2 7.8 8.7 64 64 A H - 0 0 111 -2,-0.3 2,-0.6 1,-0.1 3,-0.2 -0.398 51.7-143.6 -61.1 133.0 7.3 6.9 5.2 65 65 A H S S- 0 0 32 1,-0.2 -1,-0.1 -2,-0.1 -4,-0.0 -0.907 74.1 -15.3-109.7 117.3 9.0 3.5 5.2 66 66 A H S S+ 0 0 171 -2,-0.6 -1,-0.2 2,-0.2 -2,-0.0 0.755 93.6 126.4 64.2 27.1 11.9 3.1 2.8 67 67 A H 0 0 123 1,-0.3 -2,-0.1 -3,-0.2 -1,-0.1 0.693 360.0 360.0 -83.7 -20.4 10.9 6.2 0.9 68 68 A H 0 0 222 -4,-0.2 -1,-0.3 0, 0.0 -2,-0.2 -0.997 360.0 360.0-132.8 360.0 14.4 7.4 1.4