==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JUN-07 2JS4 . COMPND 2 MOLECULE: UPF0434 PROTEIN BB2007; . SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA BRONCHISEPTICA RB50; . AUTHOR A.ELETSKY,D.SUKUMARAN,Y.WU,K.SINGARAPU,D.PARISH,D.XU,D.WANG, . 70 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6724.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 57.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 25.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 18 25.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 233 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 144.3 -27.0 -1.6 -20.3 2 2 A E - 0 0 180 0, 0.0 2,-0.4 0, 0.0 0, 0.0 -0.900 360.0-152.4-106.9 127.1 -23.7 -3.5 -20.4 3 3 A S + 0 0 101 -2,-0.5 0, 0.0 1,-0.2 0, 0.0 -0.773 21.0 166.6-100.0 141.0 -20.9 -2.3 -18.2 4 4 A R + 0 0 231 -2,-0.4 -1,-0.2 0, 0.0 3,-0.0 0.591 20.4 141.1-109.3 -91.9 -17.2 -2.8 -19.1 5 5 A L - 0 0 108 1,-0.1 -2,-0.0 3,-0.0 0, 0.0 0.550 49.9-139.6 65.9 147.1 -14.8 -0.8 -17.0 6 6 A L + 0 0 166 2,-0.0 2,-1.0 0, 0.0 -1,-0.1 0.032 69.1 118.5-117.4 19.5 -11.4 -1.7 -15.5 7 7 A D + 0 0 54 1,-0.2 3,-0.1 10,-0.0 10,-0.0 -0.754 20.7 139.6 -96.5 96.0 -12.4 0.2 -12.3 8 8 A I + 0 0 157 -2,-1.0 2,-0.5 1,-0.3 -1,-0.2 0.811 63.2 36.5-101.8 -44.6 -12.4 -2.3 -9.4 9 9 A L + 0 0 83 9,-0.1 9,-1.7 3,-0.0 2,-0.3 -0.948 58.6 174.1-125.4 118.0 -10.9 -0.5 -6.5 10 10 A V B -A 17 0A 45 -2,-0.5 7,-0.3 7,-0.2 6,-0.1 -0.840 48.2 -82.9-112.5 156.0 -11.3 3.2 -5.5 11 11 A C > - 0 0 2 5,-3.5 4,-1.6 -2,-0.3 -1,-0.0 -0.355 33.0-140.8 -56.6 127.6 -10.1 5.0 -2.4 12 12 A P T 4 S+ 0 0 72 0, 0.0 -1,-0.2 0, 0.0 33,-0.0 0.612 99.2 33.8 -68.2 -11.6 -12.6 4.3 0.4 13 13 A V T 4 S+ 0 0 109 3,-0.1 -2,-0.0 0, 0.0 -3,-0.0 0.812 132.2 23.3-107.6 -53.9 -12.1 7.9 1.6 14 14 A C T 4 S- 0 0 63 2,-0.1 3,-0.1 1,-0.0 -3,-0.0 0.588 89.6-136.1 -93.5 -11.8 -11.5 10.1 -1.5 15 15 A K < + 0 0 147 -4,-1.6 2,-0.3 1,-0.2 3,-0.0 0.665 55.8 143.9 59.9 18.9 -13.2 7.7 -3.9 16 16 A G - 0 0 26 1,-0.1 -5,-3.5 -6,-0.1 -1,-0.2 -0.646 60.1 -97.9 -85.4 145.4 -10.3 8.4 -6.3 17 17 A R B -A 10 0A 159 -2,-0.3 13,-0.7 -7,-0.3 -7,-0.2 -0.373 40.9-116.1 -65.4 137.7 -9.1 5.5 -8.4 18 18 A L E -B 29 0B 21 -9,-1.7 2,-0.7 11,-0.1 11,-0.2 -0.432 17.5-136.7 -76.4 148.9 -6.1 3.6 -7.0 19 19 A E E -B 28 0B 70 9,-2.3 9,-3.3 -2,-0.1 2,-0.8 -0.911 15.9-145.5-113.3 106.6 -2.8 3.7 -8.9 20 20 A F E +B 27 0B 121 -2,-0.7 2,-0.2 7,-0.3 7,-0.2 -0.613 24.1 175.2 -82.0 108.3 -1.2 0.3 -8.9 21 21 A Q E > -B 26 0B 76 5,-3.0 5,-0.7 -2,-0.8 -2,-0.0 -0.661 29.4-146.6-106.1 165.5 2.5 0.5 -8.8 22 22 A R T 5S+ 0 0 221 -2,-0.2 5,-0.1 3,-0.2 -2,-0.1 0.027 73.3 96.8-121.5 25.8 5.1 -2.4 -8.6 23 23 A A T 5S- 0 0 63 3,-0.1 -1,-0.1 1,-0.1 0, 0.0 0.981 118.7 -10.5 -76.6 -66.6 7.7 -0.6 -6.5 24 24 A Q T 5S- 0 0 127 2,-0.0 14,-0.3 15,-0.0 -2,-0.1 0.126 110.5 -98.0-111.1 15.1 6.7 -1.9 -3.1 25 25 A A T 5S+ 0 0 31 1,-0.2 13,-3.7 12,-0.1 2,-0.4 0.999 71.3 161.9 62.3 73.2 3.5 -3.2 -4.6 26 26 A E E < -BC 21 37B 2 -5,-0.7 -5,-3.0 11,-0.3 2,-0.9 -0.940 46.9-137.2-130.8 144.5 1.3 -0.3 -3.7 27 27 A L E -BC 20 36B 22 9,-2.9 9,-2.4 -2,-0.4 2,-0.4 -0.855 32.6-148.5 -97.1 97.9 -2.0 1.1 -4.6 28 28 A V E -BC 19 35B 7 -9,-3.3 -9,-2.3 -2,-0.9 2,-1.2 -0.536 8.4-138.0 -74.4 123.5 -1.3 4.8 -4.7 29 29 A C E >>> -BC 18 34B 1 5,-2.6 2,-2.9 -2,-0.4 4,-1.8 -0.724 19.0-150.6 -77.6 98.1 -4.2 7.1 -3.8 30 30 A N T 345S+ 0 0 123 -2,-1.2 -13,-0.1 -13,-0.7 -1,-0.1 -0.225 86.9 33.8 -77.2 53.3 -3.6 9.7 -6.5 31 31 A A T 345S+ 0 0 70 -2,-2.9 -1,-0.2 3,-0.1 -2,-0.0 0.173 119.3 44.1-164.8 -39.1 -5.1 12.5 -4.5 32 32 A D T <45S- 0 0 64 -3,-0.6 -2,-0.2 2,-0.1 21,-0.2 0.513 100.5-125.2 -93.8 -8.9 -4.2 11.8 -0.8 33 33 A R T <5 + 0 0 133 -4,-1.8 20,-2.4 1,-0.2 21,-0.4 0.828 67.0 134.4 62.7 34.7 -0.6 10.8 -1.7 34 34 A L E < -CD 29 52B 45 -5,-0.9 -5,-2.6 18,-0.2 2,-0.3 -0.591 42.4-155.8-106.1 171.0 -1.2 7.5 0.1 35 35 A A E -CD 28 51B 0 16,-2.2 16,-2.3 -7,-0.3 -7,-0.3 -0.849 8.6-147.1-154.6 112.2 -0.4 4.0 -1.0 36 36 A F E -C 27 0B 3 -9,-2.4 -9,-2.9 -2,-0.3 2,-0.3 -0.699 27.9-131.3 -80.4 120.5 -2.1 0.8 0.2 37 37 A P E -C 26 0B 32 0, 0.0 7,-3.2 0, 0.0 2,-0.9 -0.542 4.7-143.1 -79.9 132.8 0.6 -2.0 0.3 38 38 A V E -E 43 0C 33 -13,-3.7 2,-2.0 -2,-0.3 3,-0.1 -0.827 11.2-156.9 -93.3 102.9 -0.1 -5.4 -1.4 39 39 A R E > -E 42 0C 207 3,-2.9 3,-1.2 -2,-0.9 -14,-0.1 -0.533 67.2 -58.5 -84.4 74.0 1.5 -7.9 1.0 40 40 A D T 3 S- 0 0 158 -2,-2.0 2,-0.4 1,-0.3 -1,-0.2 0.967 122.5 -18.6 49.0 77.5 1.9 -10.6 -1.6 41 41 A G T 3 S+ 0 0 63 -3,-0.1 -1,-0.3 1,-0.1 -2,-0.1 -0.217 123.7 89.3 95.5 -43.5 -1.7 -11.1 -2.7 42 42 A V E < -E 39 0C 92 -3,-1.2 -3,-2.9 -2,-0.4 2,-0.4 -0.794 65.2-154.2 -97.9 109.0 -3.3 -9.5 0.4 43 43 A P E -E 38 0C 65 0, 0.0 2,-1.1 0, 0.0 -5,-0.3 -0.683 11.0-138.4 -83.3 127.4 -3.8 -5.7 -0.1 44 44 A I + 0 0 45 -7,-3.2 -2,-0.0 -2,-0.4 -6,-0.0 -0.738 21.6 179.8 -88.4 99.0 -3.8 -3.7 3.2 45 45 A M + 0 0 62 -2,-1.1 2,-0.6 -9,-0.1 -1,-0.1 0.114 47.2 112.4 -87.0 22.5 -6.7 -1.2 2.7 46 46 A L > - 0 0 90 1,-0.2 3,-0.7 3,-0.1 4,-0.3 -0.874 57.1-156.0-101.7 116.7 -6.0 0.3 6.1 47 47 A E G > S+ 0 0 115 -2,-0.6 3,-1.0 1,-0.3 -1,-0.2 0.866 92.0 53.2 -61.3 -40.3 -4.7 3.8 5.9 48 48 A A G 3 S+ 0 0 86 1,-0.3 -1,-0.3 3,-0.0 -2,-0.0 0.789 115.4 40.5 -66.6 -27.5 -2.9 3.7 9.3 49 49 A E G < S+ 0 0 142 -3,-0.7 -1,-0.3 2,-0.1 -2,-0.2 0.284 106.0 82.5-106.8 9.3 -1.1 0.6 8.4 50 50 A A S < S- 0 0 25 -3,-1.0 2,-0.3 -4,-0.3 -14,-0.2 -0.214 81.0-102.9 -96.5-169.6 -0.3 1.7 4.9 51 51 A R E -D 35 0B 46 -16,-2.3 -16,-2.2 -2,-0.1 2,-0.2 -0.856 25.9-153.7-117.2 154.5 2.4 3.9 3.5 52 52 A S E -D 34 0B 18 3,-2.0 -18,-0.2 -2,-0.3 5,-0.1 -0.686 25.3-128.7-115.3 173.8 2.3 7.5 2.4 53 53 A L S S+ 0 0 81 -20,-2.4 3,-0.2 -2,-0.2 -19,-0.1 0.451 116.4 42.3 -96.0 -7.6 4.4 9.5 -0.1 54 54 A D S S+ 0 0 118 -21,-0.4 2,-0.5 1,-0.3 -1,-0.1 0.680 120.8 40.8-103.4 -31.0 4.8 12.1 2.7 55 55 A A S S- 0 0 56 2,-0.0 -3,-2.0 0, 0.0 -1,-0.3 -0.931 73.0-168.0-128.0 104.6 5.4 9.6 5.5 56 56 A E - 0 0 105 -2,-0.5 -3,-0.1 -5,-0.2 -5,-0.0 -0.340 31.9 -99.4 -81.8 170.8 7.6 6.6 4.8 57 57 A A - 0 0 80 -5,-0.1 2,-0.6 -2,-0.1 -1,-0.1 -0.841 29.9-144.9 -98.2 111.2 8.0 3.5 7.1 58 58 A P + 0 0 132 0, 0.0 2,-0.4 0, 0.0 0, 0.0 -0.656 26.6 171.0 -75.8 115.4 11.1 3.6 9.3 59 59 A A + 0 0 86 -2,-0.6 -2,-0.0 2,-0.0 0, 0.0 -0.890 12.7 149.2-134.1 101.9 12.4 0.1 9.7 60 60 A Q - 0 0 159 -2,-0.4 2,-0.8 3,-0.0 3,-0.3 -0.862 40.0-137.6-133.6 99.1 15.8 -0.5 11.3 61 61 A P - 0 0 122 0, 0.0 3,-0.2 0, 0.0 -2,-0.0 -0.446 60.8 -54.4 -67.6 101.3 16.0 -3.9 13.2 62 62 A S - 0 0 105 -2,-0.8 2,-1.4 1,-0.2 4,-0.1 0.830 50.5-147.5 35.0 91.6 17.8 -3.3 16.5 63 63 A L + 0 0 142 -3,-0.3 2,-0.3 2,-0.1 -1,-0.2 -0.704 55.1 119.8 -83.3 90.8 21.2 -1.7 15.9 64 64 A E S S- 0 0 136 -2,-1.4 2,-1.5 -3,-0.2 0, 0.0 -0.993 73.2-118.0-155.0 146.3 22.9 -3.4 18.8 65 65 A H - 0 0 189 -2,-0.3 2,-0.4 2,-0.0 -2,-0.1 -0.700 49.9-177.1 -86.2 83.5 25.8 -5.8 19.5 66 66 A H - 0 0 127 -2,-1.5 2,-0.2 -4,-0.1 -2,-0.1 -0.708 28.0-115.7 -93.8 134.6 23.6 -8.4 21.0 67 67 A H + 0 0 131 -2,-0.4 2,-0.2 2,-0.0 -1,-0.1 -0.456 46.1 164.5 -68.1 131.8 25.0 -11.6 22.5 68 68 A H + 0 0 144 -2,-0.2 2,-2.3 1,-0.0 -1,-0.0 -0.608 41.2 58.9-133.8-168.0 23.9 -14.7 20.6 69 69 A H 0 0 192 -2,-0.2 -2,-0.0 1,-0.2 -1,-0.0 -0.258 360.0 360.0 74.3 -50.5 24.7 -18.4 20.2 70 70 A H 0 0 204 -2,-2.3 -1,-0.2 0, 0.0 -3,-0.0 -0.049 360.0 360.0-148.5 360.0 24.1 -19.0 23.9