==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 29-NOV-07 2JXT . COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN LX; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS . AUTHOR G.LIU,D.WANG,C.NWOSU,L.OWENS,R.XIAO,J.LIU,M.C.BARAN,G.SWAPNA . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6903.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 77.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 24.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 18.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 23.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 224 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 125.2 2.9 0.1 1.1 2 2 A K + 0 0 204 3,-0.0 2,-0.2 1,-0.0 28,-0.0 -0.485 360.0 161.5 -81.2 153.2 4.9 -2.2 -1.2 3 3 A M - 0 0 106 -2,-0.1 2,-0.5 3,-0.0 3,-0.0 -0.864 50.0 -52.2-151.6-178.0 3.3 -4.1 -4.1 4 4 A K S S- 0 0 100 -2,-0.2 72,-0.1 1,-0.1 76,-0.0 -0.610 73.3-106.6 -66.2 119.5 3.9 -6.0 -7.4 5 5 A T - 0 0 13 -2,-0.5 2,-0.5 71,-0.1 25,-0.2 -0.185 26.7-135.6 -59.8 135.2 6.0 -3.4 -9.4 6 6 A K E -A 29 0A 67 23,-2.8 23,-3.2 57,-0.1 2,-0.8 -0.796 12.2-136.5 -91.7 127.3 4.3 -1.6 -12.3 7 7 A I E -AB 28 62A 1 55,-0.8 55,-3.2 -2,-0.5 2,-0.8 -0.741 17.5-158.4 -87.8 110.8 6.3 -1.4 -15.5 8 8 A F E -AB 27 61A 13 19,-3.0 19,-1.7 -2,-0.8 2,-1.4 -0.794 6.5-152.4 -95.1 106.3 5.9 2.2 -16.9 9 9 A R E -AB 26 60A 101 51,-3.4 51,-2.1 -2,-0.8 2,-0.3 -0.639 22.6-164.9 -74.6 89.9 6.7 2.4 -20.7 10 10 A V E -AB 25 59A 0 15,-3.3 15,-2.4 -2,-1.4 2,-0.4 -0.620 11.1-167.9 -82.0 138.2 7.8 6.0 -20.8 11 11 A K E +AB 24 58A 91 47,-2.1 47,-1.3 -2,-0.3 46,-0.4 -0.939 34.4 112.4-129.5 107.7 8.1 7.8 -24.2 12 12 A G E -A 23 0A 2 11,-1.9 11,-2.6 -2,-0.4 2,-0.4 -0.699 55.4 -85.8-152.0-159.5 9.9 11.1 -24.2 13 13 A K E -AB 22 55A 76 42,-2.9 42,-2.5 9,-0.3 2,-0.4 -0.975 20.7-159.5-130.3 140.8 13.0 13.2 -25.3 14 14 A F E -AB 21 54A 20 7,-2.7 7,-2.6 -2,-0.4 2,-0.7 -0.982 23.1-125.9-121.2 133.8 16.5 13.8 -23.8 15 15 A L E +A 20 0A 34 38,-2.9 2,-0.4 -2,-0.4 5,-0.2 -0.658 39.0 161.7 -81.3 111.3 18.6 16.8 -24.7 16 16 A M E > S-A 19 0A 77 3,-3.1 3,-1.0 -2,-0.7 -2,-0.1 -0.994 70.0 -3.7-131.2 126.4 22.1 15.7 -26.0 17 17 A G T 3 S- 0 0 52 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.867 128.5 -60.5 62.4 36.7 24.4 18.1 -28.0 18 18 A D T 3 S+ 0 0 147 1,-0.2 2,-0.4 -3,-0.1 -1,-0.3 0.715 119.7 111.3 60.5 22.6 21.6 20.7 -28.0 19 19 A K E < -A 16 0A 129 -3,-1.0 -3,-3.1 -5,-0.1 2,-0.8 -0.975 69.7-126.6-127.5 140.0 19.5 18.2 -29.8 20 20 A L E -A 15 0A 103 -2,-0.4 -5,-0.2 -5,-0.2 -3,-0.0 -0.763 24.4-168.8 -89.7 110.3 16.4 16.3 -28.6 21 21 A Q E -A 14 0A 44 -7,-2.6 -7,-2.7 -2,-0.8 2,-0.2 -0.864 18.7-130.1 -97.8 127.4 16.7 12.5 -29.0 22 22 A P E -A 13 0A 93 0, 0.0 2,-0.3 0, 0.0 -9,-0.3 -0.477 27.2-172.1 -75.3 144.9 13.4 10.4 -28.5 23 23 A F E -A 12 0A 19 -11,-2.6 -11,-1.9 -2,-0.2 2,-0.5 -0.980 24.0-150.3-138.2 150.3 13.5 7.4 -26.1 24 24 A T E -A 11 0A 72 -2,-0.3 2,-0.7 -13,-0.2 -13,-0.2 -0.887 24.3-174.6-119.3 97.0 11.2 4.5 -25.1 25 25 A K E -A 10 0A 25 -15,-2.4 -15,-3.3 -2,-0.5 2,-0.9 -0.829 12.7-168.7-102.2 109.7 12.0 3.5 -21.5 26 26 A E E +A 9 0A 23 -2,-0.7 2,-0.4 -17,-0.3 -17,-0.2 -0.832 25.1 162.2 -92.1 102.7 10.3 0.5 -20.0 27 27 A L E -A 8 0A 13 -19,-1.7 -19,-3.0 -2,-0.9 2,-0.5 -0.973 36.5-127.1-127.4 140.0 11.1 0.7 -16.2 28 28 A N E +A 7 0A 36 -2,-0.4 -21,-0.3 -21,-0.3 2,-0.2 -0.724 45.5 141.6 -88.3 124.2 9.4 -1.0 -13.2 29 29 A A E -A 6 0A 4 -23,-3.2 -23,-2.8 -2,-0.5 3,-0.1 -0.745 53.3-120.3-141.9-172.1 8.3 1.3 -10.4 30 30 A I S S- 0 0 72 1,-0.4 2,-0.3 -2,-0.2 -1,-0.1 0.753 85.7 -8.2-103.4 -40.1 5.5 1.8 -7.8 31 31 A R S >> S- 0 0 138 1,-0.1 4,-1.8 -25,-0.0 3,-1.2 -0.921 73.7 -92.3-153.0 171.2 4.3 5.3 -8.8 32 32 A E H 3> S+ 0 0 105 -2,-0.3 4,-2.0 1,-0.3 5,-0.2 0.889 118.5 63.3 -60.2 -42.0 5.0 8.4 -11.0 33 33 A E H 3> S+ 0 0 120 1,-0.2 4,-0.7 2,-0.2 -1,-0.3 0.733 107.4 47.1 -57.5 -21.2 7.0 10.2 -8.2 34 34 A E H <> S+ 0 0 53 -3,-1.2 4,-2.9 2,-0.1 5,-0.3 0.936 105.4 57.5 -76.6 -56.2 9.4 7.2 -8.7 35 35 A I H X S+ 0 0 0 -4,-1.8 4,-2.5 1,-0.2 5,-0.3 0.854 106.1 49.1 -42.2 -54.5 9.5 7.3 -12.5 36 36 A Y H X S+ 0 0 79 -4,-2.0 4,-2.4 1,-0.2 5,-0.2 0.963 116.6 39.8 -53.7 -59.9 10.8 10.9 -12.6 37 37 A E H X S+ 0 0 85 -4,-0.7 4,-1.6 1,-0.2 -1,-0.2 0.858 114.9 53.5 -60.4 -39.0 13.6 10.4 -10.1 38 38 A R H X S+ 0 0 119 -4,-2.9 4,-2.7 2,-0.2 -1,-0.2 0.901 111.2 44.8 -67.3 -41.2 14.6 6.9 -11.4 39 39 A L H X S+ 0 0 0 -4,-2.5 4,-2.7 -5,-0.3 5,-0.4 0.933 111.2 52.3 -68.5 -45.9 14.9 8.1 -15.1 40 40 A Y H X S+ 0 0 56 -4,-2.4 4,-1.0 -5,-0.3 -1,-0.2 0.846 114.4 46.5 -56.2 -33.1 16.9 11.3 -14.0 41 41 A S H X S+ 0 0 79 -4,-1.6 4,-1.7 -5,-0.2 -2,-0.2 0.930 114.5 44.6 -73.1 -48.2 19.1 8.8 -12.1 42 42 A E H X>S+ 0 0 55 -4,-2.7 4,-2.4 2,-0.2 5,-0.7 0.966 113.0 48.4 -64.9 -54.9 19.5 6.2 -15.0 43 43 A F H X>S+ 0 0 8 -4,-2.7 6,-2.0 1,-0.3 4,-1.0 0.879 114.4 48.4 -53.7 -40.1 20.2 8.7 -17.8 44 44 A G H <5S+ 0 0 31 -4,-1.0 -1,-0.3 -5,-0.4 -2,-0.2 0.840 118.6 41.9 -66.8 -33.3 22.8 10.4 -15.5 45 45 A S H <5S+ 0 0 94 -4,-1.7 -2,-0.2 -3,-0.3 -3,-0.2 0.986 126.6 24.9 -75.0 -71.3 24.3 7.0 -14.8 46 46 A K H <5S+ 0 0 135 -4,-2.4 -3,-0.2 1,-0.2 -2,-0.1 0.869 142.0 20.4 -65.0 -40.1 24.3 5.1 -18.1 47 47 A H T < - 0 0 77 0, 0.0 3,-1.8 0, 0.0 4,-0.3 -0.358 23.1-124.0 -62.2 139.3 22.1 16.3 -16.9 51 51 A R G > S+ 0 0 124 1,-0.3 3,-2.0 2,-0.2 -10,-0.0 0.878 108.3 54.6 -52.4 -48.9 18.7 16.0 -15.0 52 52 A S G 3 S+ 0 0 120 1,-0.3 -1,-0.3 3,-0.0 -12,-0.0 0.622 104.8 57.7 -65.8 -10.5 17.3 19.4 -16.3 53 53 A K G < S+ 0 0 94 -3,-1.8 -38,-2.9 -38,-0.1 2,-0.7 0.459 82.9 94.4 -99.5 -2.9 17.9 18.2 -19.9 54 54 A V E < -B 14 0A 6 -3,-2.0 2,-0.7 -4,-0.3 -40,-0.2 -0.815 58.5-168.0 -93.3 113.1 15.8 15.0 -19.6 55 55 A K E -B 13 0A 104 -42,-2.5 -42,-2.9 -2,-0.7 2,-0.4 -0.860 7.1-157.1-110.6 105.1 12.2 15.7 -20.8 56 56 A I E + 0 0 20 -2,-0.7 -44,-0.2 -44,-0.2 3,-0.1 -0.658 19.9 166.5 -78.5 129.2 9.5 13.1 -20.1 57 57 A E E + 0 0 93 -2,-0.4 2,-0.3 -46,-0.4 -45,-0.2 0.729 61.0 22.0-112.0 -37.9 6.6 13.4 -22.6 58 58 A E E -B 11 0A 104 -47,-1.3 -47,-2.1 2,-0.0 2,-0.4 -0.988 51.1-167.7-138.9 144.8 4.5 10.1 -22.1 59 59 A I E -B 10 0A 39 -2,-0.3 2,-0.6 -49,-0.2 -49,-0.2 -0.892 12.4-180.0-135.1 104.1 4.1 7.5 -19.3 60 60 A E E -B 9 0A 89 -51,-2.1 -51,-3.4 -2,-0.4 2,-0.5 -0.904 21.7-140.9-112.4 114.0 2.2 4.3 -20.3 61 61 A E E -B 8 0A 108 -2,-0.6 -53,-0.2 -53,-0.3 2,-0.2 -0.582 31.0-178.7 -73.4 116.4 1.7 1.5 -17.6 62 62 A I E -B 7 0A 30 -55,-3.2 -55,-0.8 -2,-0.5 5,-0.0 -0.578 28.5 -90.2-113.0 175.9 2.2 -1.9 -19.3 63 63 A S >> - 0 0 63 -2,-0.2 3,-1.0 -57,-0.1 4,-0.7 -0.601 32.1-119.1 -91.3 148.9 2.0 -5.6 -18.2 64 64 A P G >4 S+ 0 0 32 0, 0.0 3,-0.7 0, 0.0 13,-0.1 0.859 111.4 42.3 -54.6 -45.9 5.1 -7.6 -16.8 65 65 A E G 34 S+ 0 0 112 1,-0.2 8,-0.0 11,-0.1 -2,-0.0 0.641 108.5 60.7 -81.2 -12.5 5.2 -10.3 -19.5 66 66 A E G <4 S+ 0 0 125 -3,-1.0 -1,-0.2 7,-0.0 2,-0.1 0.584 77.1 116.3 -87.9 -11.9 4.6 -7.8 -22.3 67 67 A V << - 0 0 1 -4,-0.7 6,-0.0 -3,-0.7 -58,-0.0 -0.363 50.7-161.6 -61.2 130.0 7.8 -5.8 -21.5 68 68 A Q + 0 0 154 -2,-0.1 -1,-0.1 5,-0.0 3,-0.0 0.851 66.3 92.3 -83.5 -37.0 10.4 -5.9 -24.3 69 69 A D > - 0 0 48 1,-0.2 4,-2.3 2,-0.1 5,-0.2 -0.448 65.6-155.9 -60.6 115.5 13.5 -4.9 -22.2 70 70 A P H > S+ 0 0 96 0, 0.0 4,-1.7 0, 0.0 -1,-0.2 0.852 88.5 51.3 -65.4 -35.2 15.0 -8.3 -21.0 71 71 A V H > S+ 0 0 107 2,-0.2 4,-1.8 1,-0.2 5,-0.1 0.951 114.2 40.8 -69.5 -51.5 16.7 -6.8 -17.9 72 72 A V H > S+ 0 0 15 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.925 114.7 52.6 -62.2 -45.3 13.6 -5.0 -16.5 73 73 A K H X S+ 0 0 68 -4,-2.3 4,-1.4 1,-0.2 -1,-0.2 0.851 110.7 48.5 -59.8 -35.1 11.4 -8.0 -17.4 74 74 A A H X S+ 0 0 55 -4,-1.7 4,-0.6 -5,-0.2 -1,-0.2 0.833 108.9 54.4 -70.9 -33.8 13.9 -10.2 -15.5 75 75 A L H >< S+ 0 0 73 -4,-1.8 3,-1.1 1,-0.2 4,-0.3 0.937 107.7 48.4 -65.4 -47.5 13.8 -7.7 -12.6 76 76 A V H >< S+ 0 0 1 -4,-2.6 3,-1.5 1,-0.2 -1,-0.2 0.893 106.1 58.4 -59.4 -40.3 9.9 -7.9 -12.3 77 77 A Q H >< S+ 0 0 111 -4,-1.4 3,-1.2 1,-0.3 -1,-0.2 0.678 87.8 76.1 -66.2 -17.0 10.1 -11.8 -12.4 78 78 A R T << S+ 0 0 205 -3,-1.1 -1,-0.3 -4,-0.6 -2,-0.2 0.721 102.0 39.9 -69.1 -20.4 12.3 -11.8 -9.3 79 79 A L T < S+ 0 0 80 -3,-1.5 -1,-0.3 -4,-0.3 -2,-0.2 0.269 104.2 94.4-107.6 8.3 9.2 -11.1 -7.1 80 80 A E S < S- 0 0 56 -3,-1.2 2,-0.4 -4,-0.1 -3,-0.1 -0.235 85.7 -79.3 -91.2-177.0 7.0 -13.4 -9.2 81 81 A H - 0 0 150 -2,-0.1 2,-0.8 1,-0.1 -1,-0.1 -0.705 37.0-120.8 -91.1 130.2 6.0 -17.0 -8.6 82 82 A H - 0 0 167 -2,-0.4 2,-0.4 1,-0.1 -1,-0.1 -0.582 36.4-121.2 -67.8 108.7 8.3 -19.9 -9.6 83 83 A H - 0 0 162 -2,-0.8 2,-1.3 1,-0.1 -1,-0.1 -0.347 20.9-134.4 -60.9 110.7 6.2 -21.8 -12.1 84 84 A H + 0 0 184 -2,-0.4 2,-0.6 1,-0.1 -1,-0.1 -0.514 37.5 164.3 -74.4 92.9 5.9 -25.3 -10.6 85 85 A H 0 0 169 -2,-1.3 -1,-0.1 0, 0.0 -2,-0.0 -0.852 360.0 360.0-113.4 94.1 6.6 -27.6 -13.6 86 86 A H 0 0 242 -2,-0.6 -2,-0.0 0, 0.0 0, 0.0 -0.382 360.0 360.0 -56.1 360.0 7.4 -31.2 -12.5