==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN, VIRAL PROTEIN 04-DEC-07 2JY0 . COMPND 2 MOLECULE: PROTEASE NS2-3; . SOURCE 2 SYNTHETIC: YES; . AUTHOR R.MONTSERRET,F.PENIN . 27 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3017.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 13 48.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 40.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 224 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 81.0 -20.0 -9.8 0.1 2 2 A D + 0 0 132 1,-0.2 0, 0.0 2,-0.0 0, 0.0 -0.958 360.0 61.7-160.6 175.5 -20.8 -6.1 0.2 3 3 A R > + 0 0 193 -2,-0.3 4,-0.8 3,-0.1 -1,-0.2 0.998 46.3 175.6 60.3 71.5 -19.4 -2.6 1.2 4 4 A E H >> S+ 0 0 156 1,-0.2 4,-1.1 2,-0.2 3,-0.8 0.924 78.5 52.2 -73.0 -44.1 -16.3 -2.4 -1.1 5 5 A M H 34 S+ 0 0 151 1,-0.2 3,-0.2 2,-0.2 -1,-0.2 0.845 102.1 62.7 -61.8 -30.9 -15.4 1.2 -0.1 6 6 A A H 34 S+ 0 0 50 1,-0.2 -1,-0.2 3,-0.0 -2,-0.2 0.852 101.9 50.2 -64.1 -32.8 -15.5 0.1 3.6 7 7 A A H X< S+ 0 0 65 -3,-0.8 3,-0.5 -4,-0.8 5,-0.3 0.789 96.5 88.8 -76.8 -26.2 -12.6 -2.4 2.9 8 8 A S T 3< S+ 0 0 58 -4,-1.1 -3,-0.0 -3,-0.2 0, 0.0 -0.155 81.5 32.5 -66.1 166.7 -10.5 0.4 1.3 9 9 A A T 3 S+ 0 0 86 1,-0.1 -1,-0.2 0, 0.0 -2,-0.0 0.790 111.4 71.3 56.6 29.3 -8.1 2.6 3.4 10 10 A G S < S+ 0 0 65 -3,-0.5 -1,-0.1 0, 0.0 -2,-0.0 -0.131 107.8 8.3-166.8 56.4 -7.5 -0.3 5.8 11 11 A G S > S+ 0 0 35 0, 0.0 4,-1.9 0, 0.0 -3,-0.1 -0.232 116.7 58.6 163.5 -61.2 -5.3 -3.1 4.2 12 12 A A H > S+ 0 0 76 -5,-0.3 4,-2.0 1,-0.2 5,-0.2 0.920 106.0 53.7 -61.6 -42.1 -3.9 -2.0 0.8 13 13 A V H > S+ 0 0 104 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.909 108.3 50.7 -59.8 -40.0 -2.1 1.0 2.4 14 14 A F H > S+ 0 0 139 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.899 105.9 55.3 -65.9 -39.1 -0.5 -1.4 4.9 15 15 A V H X S+ 0 0 99 -4,-1.9 4,-1.8 1,-0.2 -2,-0.2 0.935 109.3 46.7 -60.4 -44.4 0.7 -3.7 2.0 16 16 A G H X S+ 0 0 42 -4,-2.0 4,-2.3 1,-0.2 -1,-0.2 0.894 110.8 53.6 -64.9 -37.6 2.5 -0.7 0.4 17 17 A L H X S+ 0 0 98 -4,-1.9 4,-2.0 -5,-0.2 -2,-0.2 0.923 105.9 52.1 -63.7 -43.4 4.0 0.2 3.8 18 18 A V H X S+ 0 0 72 -4,-2.5 4,-1.4 1,-0.2 -1,-0.2 0.915 111.2 48.0 -60.3 -41.3 5.4 -3.3 4.3 19 19 A L H X S+ 0 0 84 -4,-1.8 4,-3.6 1,-0.2 -1,-0.2 0.916 108.5 53.5 -67.1 -41.9 7.1 -3.1 0.8 20 20 A L H < S+ 0 0 102 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.878 105.6 54.3 -62.0 -35.6 8.5 0.4 1.6 21 21 A T H < S+ 0 0 117 -4,-2.0 -1,-0.2 2,-0.2 -2,-0.2 0.895 117.2 37.3 -65.9 -36.8 10.1 -0.9 4.8 22 22 A L H < S- 0 0 143 -4,-1.4 -2,-0.2 1,-0.2 -1,-0.2 0.936 141.4 -11.1 -80.3 -49.3 11.9 -3.7 2.8 23 23 A S < - 0 0 64 -4,-3.6 -1,-0.2 -5,-0.1 -2,-0.2 -0.826 49.2-160.1-157.4 113.9 12.7 -1.6 -0.4 24 24 A P - 0 0 47 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 0.086 57.3-100.7 -81.3 25.3 11.4 1.9 -1.3 25 25 A H - 0 0 139 1,-0.1 -2,-0.0 2,-0.0 -5,-0.0 0.989 46.0-148.8 55.0 71.5 12.2 1.4 -5.1 26 26 A Y 0 0 200 1,-0.1 -1,-0.1 0, 0.0 -3,-0.0 -0.287 360.0 360.0 -67.5 156.0 15.5 3.4 -5.3 27 27 A K 0 0 276 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.532 360.0 360.0-139.9 360.0 16.4 5.1 -8.6